Wall clock time and date at job start Wed Apr 1 2020 02:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00030 * 2 1 4 4 H 1.48506 * 109.46969 * 269.99846 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00062 * 3 2 1 6 6 H 1.48507 * 109.46849 * 150.00179 * 3 2 1 7 7 C 1.38818 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99923 * 197.64533 * 7 2 1 9 9 N 1.36934 * 120.00142 * 17.65201 * 7 2 1 10 10 C 1.46896 * 120.46592 * 28.43879 * 9 7 2 11 11 C 1.53360 * 108.73703 * 124.38961 * 10 9 7 12 12 C 1.52554 * 109.12498 * 52.26854 * 11 10 9 13 13 C 1.52951 * 114.06568 * 75.53900 * 12 11 10 14 14 N 1.47153 * 87.85749 * 139.43975 * 13 12 11 15 15 C 1.34777 * 136.00494 * 153.34071 * 14 13 12 16 16 O 1.21729 * 119.99871 * 359.97438 * 15 14 13 17 17 C 1.46498 * 120.00377 * 180.02562 * 15 14 13 18 18 C 1.36110 * 125.71053 * 179.97438 * 17 15 14 19 19 C 1.42236 * 107.62305 * 179.73066 * 18 17 15 20 20 C 1.45586 * 140.77508 * 179.38097 * 19 18 17 21 21 C 1.31809 * 114.63612 * 180.58487 * 20 19 18 22 22 S 1.75359 * 111.24015 * 0.27472 * 21 20 19 23 23 C 1.38170 * 106.99339 * 0.42925 * 19 18 17 24 24 N 1.37462 * 108.17133 * 359.57015 * 23 19 18 25 25 H 0.96999 * 125.69006 * 180.29350 * 24 23 19 26 26 C 1.47172 * 87.99579 * 333.59277 * 14 13 12 27 27 C 1.52554 * 113.42815 * 302.66176 * 12 11 10 28 28 C 1.46886 * 120.46258 * 208.47139 * 9 7 2 29 29 H 0.96998 * 119.99996 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58790 * 4.61751 * 10 9 7 31 31 H 1.08996 * 109.59931 * 244.17241 * 10 9 7 32 32 H 1.08998 * 109.53055 * 292.36666 * 11 10 9 33 33 H 1.09004 * 109.58411 * 172.19699 * 11 10 9 34 34 H 1.09005 * 113.49103 * 24.69249 * 13 12 11 35 35 H 1.09004 * 113.54524 * 254.19715 * 13 12 11 36 36 H 1.07993 * 126.18829 * 0.02562 * 18 17 15 37 37 H 1.08005 * 122.68550 * 0.85824 * 20 19 18 38 38 H 1.08001 * 124.38475 * 180.26966 * 21 20 19 39 39 H 1.08997 * 113.48858 * 141.16262 * 26 14 13 40 40 H 1.08998 * 113.48473 * 271.65678 * 26 14 13 41 41 H 1.09005 * 109.52233 * 177.21859 * 27 12 11 42 42 H 1.08993 * 109.53043 * 297.42398 * 27 12 11 43 43 H 1.09001 * 109.59048 * 355.37618 * 28 9 7 44 44 H 1.09004 * 109.59544 * 115.82154 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0521 -1.2244 0.2830 9 7 1.3739 -2.3600 -0.3607 10 6 0.2447 -2.3282 -1.2996 11 6 0.5540 -3.2646 -2.4741 12 6 0.9415 -4.6365 -1.9309 13 6 -0.2408 -5.4619 -1.4208 14 7 0.3852 -6.6402 -2.0414 15 6 0.3718 -7.9709 -1.8276 16 8 -0.2904 -8.4344 -0.9175 17 6 1.1551 -8.8593 -2.6898 18 6 1.2264 -10.2140 -2.5790 19 6 2.0856 -10.6857 -3.6097 20 6 2.6486 -11.9233 -4.1304 21 6 3.4476 -11.7699 -5.1674 22 16 3.5978 -10.0795 -5.6091 23 6 2.5183 -9.5781 -4.3132 24 7 1.9449 -8.4623 -3.7512 25 1 2.0732 -7.5485 -4.0502 26 6 1.0376 -5.7276 -2.9940 27 6 2.1309 -4.5972 -0.9765 28 6 1.8105 -3.6511 0.1871 29 1 -0.4850 0.8400 -0.0004 30 1 0.1051 -1.3123 -1.6691 31 1 -0.6609 -2.6631 -0.7938 32 1 1.3798 -2.8570 -3.0573 33 1 -0.3277 -3.3593 -3.1079 34 1 -1.1922 -5.1854 -1.8754 35 1 -0.2943 -5.5204 -0.3336 36 1 0.7183 -10.8213 -1.8446 37 1 2.4258 -12.8902 -3.7039 38 1 3.9454 -12.5803 -5.6790 39 1 2.0629 -6.0096 -3.2333 40 1 0.4376 -5.5241 -3.8810 41 1 2.3212 -5.5985 -0.5901 42 1 3.0121 -4.2368 -1.5071 43 1 2.7024 -3.5066 0.7969 44 1 1.0138 -4.0779 0.7964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050611946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:24 Heat of formation + Delta-G solvation = 103.026748 kcal Electronic energy + Delta-G solvation = -27547.922309 eV Core-core repulsion = 23787.774359 eV Total energy + Delta-G solvation = -3760.147950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -41.67821 -40.61723 -38.23655 -36.03319 -35.59471 -32.59997 -30.85920 -30.72962 -29.97092 -28.94691 -27.15349 -26.23176 -24.38121 -23.35997 -22.60403 -22.26035 -20.84914 -20.31335 -19.50400 -18.58794 -18.13136 -16.93270 -16.47963 -16.00964 -15.89699 -15.29276 -14.98852 -14.91836 -14.78439 -14.13369 -13.86344 -13.79897 -13.66314 -13.60924 -13.26972 -12.94511 -12.76073 -12.43118 -12.14287 -12.01920 -11.92415 -11.71070 -11.51897 -11.14651 -11.10789 -10.79681 -10.57101 -10.43863 -10.24390 -10.14024 -9.91635 -9.76450 -9.71742 -9.51329 -8.81600 -8.54774 -8.51697 -7.93891 -6.73438 -5.85056 -3.28029 0.78709 1.05166 1.15816 1.69456 2.61209 2.64586 2.87549 3.26259 3.33664 3.41343 3.42266 4.13355 4.36154 4.44689 4.50353 4.70889 4.86617 5.02699 5.11313 5.13038 5.24559 5.33121 5.36363 5.45110 5.47060 5.52828 5.58333 5.81292 5.82127 5.92809 5.95566 6.00746 6.16075 6.19752 6.33780 6.44934 6.46782 6.49705 6.54831 6.72250 6.87155 6.88242 7.24002 7.56182 7.59790 7.74574 7.99252 8.39538 9.15362 9.78312 10.34433 11.23138 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022389 B = 0.002326 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.336837 B =12032.369317 C =12707.322577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.171 3.829 11 C -0.125 4.125 12 C -0.070 4.070 13 C 0.118 3.882 14 N -0.642 5.642 15 C 0.612 3.388 16 O -0.526 6.526 17 C 0.003 3.997 18 C -0.073 4.073 19 C -0.163 4.163 20 C -0.069 4.069 21 C -0.223 4.223 22 S 0.130 5.870 23 C -0.012 4.012 24 N -0.524 5.524 25 H 0.420 0.580 26 C 0.090 3.910 27 C -0.108 4.108 28 C 0.147 3.853 29 H 0.254 0.746 30 H 0.091 0.909 31 H 0.020 0.980 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.157 0.843 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.814 -19.962 -12.805 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.165 4.165 12 C -0.071 4.071 13 C -0.004 4.004 14 N -0.376 5.376 15 C 0.402 3.598 16 O -0.403 6.403 17 C -0.110 4.110 18 C -0.100 4.100 19 C -0.176 4.176 20 C -0.099 4.099 21 C -0.357 4.357 22 S 0.384 5.616 23 C -0.241 4.241 24 N -0.130 5.130 25 H 0.262 0.738 26 C -0.034 4.034 27 C -0.147 4.147 28 C 0.021 3.979 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.175 0.825 37 H 0.163 0.837 38 H 0.188 0.812 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 5.096 -19.389 -13.331 24.075 hybrid contribution -0.272 0.508 0.738 0.937 sum 4.823 -18.881 -12.593 23.202 Atomic orbital electron populations 1.70028 1.05249 1.25595 1.53667 1.25047 0.95269 0.98457 1.00786 0.86299 0.79171 0.83674 0.77686 1.21439 1.21764 1.20439 1.19191 0.92818 0.84904 1.41437 0.91691 1.44027 1.37061 1.01462 1.48696 1.20795 0.88829 0.98664 0.87235 1.22096 1.00269 0.93759 1.00361 1.21638 0.96322 0.94211 0.94927 1.23124 0.96994 0.79782 1.00489 1.49585 1.49158 1.03905 1.34984 1.16421 0.80756 0.79266 0.83359 1.90878 1.43346 1.74347 1.31723 1.20044 1.02543 0.94265 0.94143 1.20724 0.99298 0.91532 0.98487 1.19383 1.05670 0.91659 1.00864 1.20330 0.96637 0.97162 0.95788 1.24867 1.08010 0.98784 1.04016 1.83951 1.47616 1.00586 1.29481 1.23609 1.06186 0.90445 1.03839 1.41818 1.38087 1.07455 1.25625 0.73846 1.23376 0.97021 0.88135 0.94823 1.21745 0.95620 0.99541 0.97815 1.20877 0.97760 0.86833 0.92469 0.93571 0.89056 0.96208 0.91790 0.92695 0.89484 0.89778 0.82513 0.83720 0.81238 0.91516 0.89239 0.92938 0.91666 0.92504 0.96234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.19 11.21 55.49 0.62 -24.57 16 2 C 0.00 0.08 4.89 -17.43 -0.09 0.00 16 3 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.25 -6.66 9.56 -15.06 -0.14 -6.80 16 8 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -13.83 2.96 -172.17 -0.51 -14.34 16 10 C 0.17 3.70 5.27 -3.64 -0.02 3.68 16 11 C -0.13 -2.02 5.31 -26.77 -0.14 -2.16 16 12 C -0.07 -1.01 0.83 -155.18 -0.13 -1.14 16 13 C 0.12 1.73 7.56 -8.23 -0.06 1.66 16 14 N -0.64 -8.88 3.46 -186.98 -0.65 -9.53 16 15 C 0.61 9.37 8.03 -12.93 -0.10 9.27 16 16 O -0.53 -9.75 17.62 5.16 0.09 -9.66 16 17 C 0.00 0.04 6.94 -82.47 -0.57 -0.53 16 18 C -0.07 -0.91 10.58 -38.81 -0.41 -1.32 16 19 C -0.16 -1.86 6.80 -105.46 -0.72 -2.58 16 20 C -0.07 -0.60 10.42 -38.55 -0.40 -1.00 16 21 C -0.22 -1.66 11.03 28.84 0.32 -1.34 16 22 S 0.13 1.09 23.24 -107.50 -2.50 -1.41 16 23 C -0.01 -0.13 8.41 -15.05 -0.13 -0.26 16 24 N -0.52 -5.84 6.00 -7.94 -0.05 -5.89 16 25 H 0.42 3.91 5.80 -40.82 -0.24 3.67 16 26 C 0.09 1.02 6.39 -8.38 -0.05 0.97 16 27 C -0.11 -1.73 5.25 -26.78 -0.14 -1.87 16 28 C 0.15 2.92 6.41 -3.65 -0.02 2.90 16 29 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.09 2.26 5.97 -51.93 -0.31 1.95 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 35 H 0.08 1.38 7.53 -51.93 -0.39 0.98 16 36 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.15 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.07 0.66 6.40 -51.93 -0.33 0.33 16 40 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.05 0.81 7.95 -51.93 -0.41 0.39 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 1.13 7.92 -51.93 -0.41 0.72 16 44 H 0.02 0.40 7.60 -51.93 -0.39 0.01 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -31.07 367.33 -11.13 -42.20 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.83 Total: 2.17 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.81 Total: -0.51 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.58 Total: -54.32 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.50 Total: -1.41 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.07 -11.13 -42.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050611946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.230 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds