Wall clock time and date at job start Wed Apr 1 2020 02:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00030 * 2 1 4 4 H 1.48506 * 109.46969 * 269.99846 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00062 * 3 2 1 6 6 H 1.48507 * 109.46849 * 150.00179 * 3 2 1 7 7 C 1.38818 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99923 * 197.64533 * 7 2 1 9 9 N 1.36934 * 120.00142 * 17.65201 * 7 2 1 10 10 C 1.46896 * 120.46592 * 28.43879 * 9 7 2 11 11 C 1.53360 * 108.73703 * 124.38961 * 10 9 7 12 12 C 1.52554 * 109.12498 * 52.26854 * 11 10 9 13 13 C 1.52951 * 114.06568 * 75.53900 * 12 11 10 14 14 N 1.47153 * 87.85749 * 139.43975 * 13 12 11 15 15 C 1.34777 * 136.00494 * 153.34071 * 14 13 12 16 16 O 1.21729 * 119.99871 * 359.97438 * 15 14 13 17 17 C 1.46498 * 120.00377 * 180.02562 * 15 14 13 18 18 C 1.36110 * 125.71053 * 179.97438 * 17 15 14 19 19 C 1.42236 * 107.62305 * 179.73066 * 18 17 15 20 20 C 1.45586 * 140.77508 * 179.38097 * 19 18 17 21 21 C 1.31809 * 114.63612 * 180.58487 * 20 19 18 22 22 S 1.75359 * 111.24015 * 0.27472 * 21 20 19 23 23 C 1.38170 * 106.99339 * 0.42925 * 19 18 17 24 24 N 1.37462 * 108.17133 * 359.57015 * 23 19 18 25 25 H 0.96999 * 125.69006 * 180.29350 * 24 23 19 26 26 C 1.47172 * 87.99579 * 333.59277 * 14 13 12 27 27 C 1.52554 * 113.42815 * 302.66176 * 12 11 10 28 28 C 1.46886 * 120.46258 * 208.47139 * 9 7 2 29 29 H 0.96998 * 119.99996 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58790 * 4.61751 * 10 9 7 31 31 H 1.08996 * 109.59931 * 244.17241 * 10 9 7 32 32 H 1.08998 * 109.53055 * 292.36666 * 11 10 9 33 33 H 1.09004 * 109.58411 * 172.19699 * 11 10 9 34 34 H 1.09005 * 113.49103 * 24.69249 * 13 12 11 35 35 H 1.09004 * 113.54524 * 254.19715 * 13 12 11 36 36 H 1.07993 * 126.18829 * 0.02562 * 18 17 15 37 37 H 1.08005 * 122.68550 * 0.85824 * 20 19 18 38 38 H 1.08001 * 124.38475 * 180.26966 * 21 20 19 39 39 H 1.08997 * 113.48858 * 141.16262 * 26 14 13 40 40 H 1.08998 * 113.48473 * 271.65678 * 26 14 13 41 41 H 1.09005 * 109.52233 * 177.21859 * 27 12 11 42 42 H 1.08993 * 109.53043 * 297.42398 * 27 12 11 43 43 H 1.09001 * 109.59048 * 355.37618 * 28 9 7 44 44 H 1.09004 * 109.59544 * 115.82154 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0521 -1.2244 0.2830 9 7 1.3739 -2.3600 -0.3607 10 6 0.2447 -2.3282 -1.2996 11 6 0.5540 -3.2646 -2.4741 12 6 0.9415 -4.6365 -1.9309 13 6 -0.2408 -5.4619 -1.4208 14 7 0.3852 -6.6402 -2.0414 15 6 0.3718 -7.9709 -1.8276 16 8 -0.2904 -8.4344 -0.9175 17 6 1.1551 -8.8593 -2.6898 18 6 1.2264 -10.2140 -2.5790 19 6 2.0856 -10.6857 -3.6097 20 6 2.6486 -11.9233 -4.1304 21 6 3.4476 -11.7699 -5.1674 22 16 3.5978 -10.0795 -5.6091 23 6 2.5183 -9.5781 -4.3132 24 7 1.9449 -8.4623 -3.7512 25 1 2.0732 -7.5485 -4.0502 26 6 1.0376 -5.7276 -2.9940 27 6 2.1309 -4.5972 -0.9765 28 6 1.8105 -3.6511 0.1871 29 1 -0.4850 0.8400 -0.0004 30 1 0.1051 -1.3123 -1.6691 31 1 -0.6609 -2.6631 -0.7938 32 1 1.3798 -2.8570 -3.0573 33 1 -0.3277 -3.3593 -3.1079 34 1 -1.1922 -5.1854 -1.8754 35 1 -0.2943 -5.5204 -0.3336 36 1 0.7183 -10.8213 -1.8446 37 1 2.4258 -12.8902 -3.7039 38 1 3.9454 -12.5803 -5.6790 39 1 2.0629 -6.0096 -3.2333 40 1 0.4376 -5.5241 -3.8810 41 1 2.3212 -5.5985 -0.5901 42 1 3.0121 -4.2368 -1.5071 43 1 2.7024 -3.5066 0.7969 44 1 1.0138 -4.0779 0.7964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050611946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:23 Heat of formation + Delta-G solvation = 85.028568 kcal Electronic energy + Delta-G solvation = -27548.702769 eV Core-core repulsion = 23787.774359 eV Total energy + Delta-G solvation = -3760.928410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.64005 -41.68680 -39.47928 -37.63255 -36.31203 -34.31971 -32.39101 -31.60538 -31.51824 -30.02662 -28.45568 -27.28809 -26.07825 -24.23306 -23.98703 -23.34774 -22.36889 -21.21738 -20.26690 -19.83267 -19.35230 -18.40224 -17.72342 -17.13276 -17.01475 -16.80192 -16.06983 -15.88264 -15.68288 -15.48132 -15.36332 -15.06478 -14.93301 -14.73040 -14.58598 -14.10156 -13.99834 -13.71694 -13.41698 -13.10966 -12.97960 -12.94857 -12.80265 -12.62374 -12.59163 -12.27702 -12.06184 -11.83972 -11.76148 -11.60798 -11.34868 -11.26328 -11.01220 -10.60000 -10.49972 -9.94012 -9.30508 -8.66427 -8.65402 -7.86341 -5.31858 0.06954 0.14507 0.41515 1.06690 1.47987 1.49324 1.54090 1.57783 1.77986 2.05884 2.26371 2.52194 3.11743 3.23274 3.33665 3.65862 3.73582 3.78579 3.91558 3.98133 4.14014 4.20522 4.25625 4.38968 4.48607 4.56061 4.59308 4.62644 4.67708 4.73926 4.76170 4.89046 4.99839 5.06857 5.12861 5.16263 5.23424 5.28575 5.32531 5.41533 5.53357 5.62832 5.66814 5.80721 6.09930 6.41276 6.48999 6.84550 7.17310 7.88106 8.38746 9.19141 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022389 B = 0.002326 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.336837 B =12032.369317 C =12707.322577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.048 4.048 3 Si 0.964 3.036 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.272 1.272 7 C -0.261 4.261 8 H 0.064 0.936 9 N -0.607 5.607 10 C 0.174 3.826 11 C -0.108 4.108 12 C -0.071 4.071 13 C 0.113 3.887 14 N -0.641 5.641 15 C 0.611 3.389 16 O -0.572 6.572 17 C -0.014 4.014 18 C -0.081 4.081 19 C -0.181 4.181 20 C -0.086 4.086 21 C -0.210 4.210 22 S 0.158 5.842 23 C -0.023 4.023 24 N -0.518 5.518 25 H 0.428 0.572 26 C 0.105 3.895 27 C -0.094 4.094 28 C 0.144 3.856 29 H 0.250 0.750 30 H 0.057 0.943 31 H -0.003 1.003 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.156 0.844 37 H 0.165 0.835 38 H 0.203 0.797 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.050 0.950 44 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.750 -21.540 -15.744 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.244 4.244 3 Si 0.793 3.207 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.197 1.197 7 C -0.391 4.391 8 H 0.081 0.919 9 N -0.330 5.330 10 C 0.049 3.951 11 C -0.147 4.147 12 C -0.072 4.072 13 C -0.009 4.009 14 N -0.374 5.374 15 C 0.402 3.598 16 O -0.452 6.452 17 C -0.127 4.127 18 C -0.110 4.110 19 C -0.193 4.193 20 C -0.116 4.116 21 C -0.344 4.344 22 S 0.411 5.589 23 C -0.253 4.253 24 N -0.125 5.125 25 H 0.271 0.729 26 C -0.017 4.017 27 C -0.133 4.133 28 C 0.018 3.982 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.015 0.985 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.174 0.826 37 H 0.182 0.818 38 H 0.220 0.780 39 H 0.108 0.892 40 H 0.139 0.861 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 7.067 -20.969 -16.304 27.485 hybrid contribution -0.834 0.917 1.672 2.082 sum 6.233 -20.051 -14.632 25.593 Atomic orbital electron populations 1.70180 1.06568 1.25825 1.55290 1.25753 0.95978 1.01350 1.01311 0.85318 0.78014 0.79748 0.77653 1.20880 1.22489 1.19656 1.19482 0.92952 0.86136 1.40567 0.91860 1.44287 1.37276 1.01876 1.49575 1.20646 0.87670 0.98186 0.88643 1.21849 1.01716 0.93037 0.98115 1.21477 0.95474 0.94170 0.96054 1.23146 0.97919 0.80549 0.99298 1.49574 1.48931 1.03532 1.35332 1.16685 0.80423 0.79635 0.83030 1.90844 1.45390 1.75208 1.33726 1.19696 1.03789 0.94048 0.95168 1.20900 0.99508 0.91659 0.98914 1.19724 1.05694 0.93223 1.00677 1.20543 0.97358 0.97143 0.96593 1.25328 1.06760 0.99191 1.03112 1.83942 1.46165 1.00969 1.27823 1.24078 1.06399 0.90206 1.04576 1.41664 1.37751 1.07969 1.25071 0.72926 1.23421 0.98911 0.85129 0.94193 1.21533 0.96617 0.98555 0.96556 1.20959 0.96877 0.86308 0.94017 0.94112 0.92426 0.98486 0.91314 0.89798 0.88161 0.92340 0.82633 0.81790 0.78008 0.89184 0.86092 0.92157 0.90868 0.93110 0.97588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.77 11.21 21.65 0.24 -53.53 16 2 C -0.05 -2.63 4.89 84.86 0.42 -2.21 16 3 Si 0.96 43.80 29.59 68.60 2.03 45.83 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.26 -13.91 9.56 84.04 0.80 -13.11 16 8 H 0.06 3.32 7.89 -2.91 -0.02 3.30 16 9 N -0.61 -28.99 2.96 -698.64 -2.07 -31.06 16 10 C 0.17 7.68 5.27 86.42 0.46 8.14 16 11 C -0.11 -3.29 5.31 30.57 0.16 -3.13 16 12 C -0.07 -1.91 0.83 -52.61 -0.04 -1.96 16 13 C 0.11 3.25 7.56 83.31 0.63 3.88 16 14 N -0.64 -16.86 3.46 -863.67 -2.99 -19.85 16 15 C 0.61 18.54 8.03 86.40 0.69 19.24 16 16 O -0.57 -21.80 17.62 -4.44 -0.08 -21.88 16 17 C -0.01 -0.35 6.94 39.81 0.28 -0.08 16 18 C -0.08 -2.01 10.58 22.77 0.24 -1.77 16 19 C -0.18 -3.82 6.80 -20.41 -0.14 -3.96 16 20 C -0.09 -1.28 10.42 23.39 0.24 -1.03 16 21 C -0.21 -2.35 11.03 67.05 0.74 -1.61 16 22 S 0.16 2.12 23.24 -56.49 -1.31 0.80 16 23 C -0.02 -0.46 8.41 83.79 0.70 0.24 16 24 N -0.52 -10.41 6.00 -179.04 -1.07 -11.48 16 25 H 0.43 6.63 5.80 -92.71 -0.54 6.09 16 26 C 0.11 2.05 6.39 83.20 0.53 2.58 16 27 C -0.09 -2.89 5.25 30.56 0.16 -2.73 16 28 C 0.14 5.82 6.41 86.42 0.55 6.38 16 29 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.06 2.94 5.97 -2.39 -0.01 2.92 16 31 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 2.10 8.10 -2.38 -0.02 2.09 16 34 H 0.10 2.62 8.06 -2.38 -0.02 2.60 16 35 H 0.06 1.98 7.53 -2.38 -0.02 1.96 16 36 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 37 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 38 H 0.20 0.87 8.06 -2.91 -0.02 0.85 16 39 H 0.09 1.39 6.40 -2.39 -0.02 1.38 16 40 H 0.12 1.72 8.09 -2.39 -0.02 1.70 16 41 H 0.06 1.78 7.95 -2.38 -0.02 1.76 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.05 2.06 7.92 -2.39 -0.02 2.04 16 44 H 0.01 0.26 7.60 -2.39 -0.02 0.24 16 Total: -1.00 -70.47 367.33 1.68 -68.79 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.50 Total: 13.50 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 6.43 Total: 8.88 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -5.89 Total: -115.92 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.08 Total: -21.88 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.31 Total: 0.80 kcal Total: -70.47 1.68 -68.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050611946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.819 kcal (2) G-P(sol) polarization free energy of solvation -70.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds