Wall clock time and date at job start Wed Apr 1 2020 03:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99961 * 2 1 4 4 H 1.48494 * 109.47063 * 240.00089 * 3 2 1 5 5 H 1.48507 * 109.47121 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47395 * 119.99971 * 3 2 1 7 7 C 1.38806 * 120.00492 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00359 * 162.51440 * 7 2 1 9 9 N 1.36939 * 119.99809 * 342.23050 * 7 2 1 10 10 C 1.46882 * 120.46551 * 331.56649 * 9 7 2 11 11 C 1.52860 * 109.02035 * 235.48648 * 10 9 7 12 12 C 1.52674 * 109.17092 * 307.81498 * 11 10 9 13 13 C 1.53487 * 113.61971 * 188.98535 * 12 11 10 14 14 N 1.47674 * 85.98586 * 137.71352 * 13 12 11 15 15 C 1.34771 * 134.45801 * 155.65746 * 14 13 12 16 16 O 1.21728 * 120.00232 * 180.02562 * 15 14 13 17 17 C 1.46453 * 119.99857 * 0.03603 * 15 14 13 18 18 C 1.37465 * 125.80529 * 180.02562 * 17 15 14 19 19 C 1.40662 * 107.55554 * 179.97438 * 18 17 15 20 20 S 1.76025 * 142.39397 * 179.97438 * 19 18 17 21 21 C 1.75589 * 91.30927 * 180.02562 * 20 19 18 22 22 C 1.32771 * 110.47271 * 359.97438 * 21 20 19 23 23 C 1.38241 * 108.03320 * 359.97438 * 19 18 17 24 24 N 1.37915 * 125.80927 * 359.71020 * 17 15 14 25 25 H 0.97012 * 125.68358 * 0.02562 * 24 17 15 26 26 C 1.47669 * 91.08411 * 335.68351 * 14 13 12 27 27 C 1.52669 * 113.18366 * 57.46411 * 12 11 10 28 28 C 1.46876 * 120.46786 * 151.83874 * 9 7 2 29 29 H 0.96997 * 120.00262 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.59244 * 355.31226 * 10 9 7 31 31 H 1.09007 * 109.59079 * 115.74279 * 10 9 7 32 32 H 1.09000 * 109.61256 * 187.84268 * 11 10 9 33 33 H 1.08996 * 109.44377 * 67.69407 * 11 10 9 34 34 H 1.09000 * 113.79026 * 251.97701 * 13 12 11 35 35 H 1.08997 * 113.79043 * 23.44880 * 13 12 11 36 36 H 1.08004 * 126.22360 * 0.02562 * 18 17 15 37 37 H 1.08004 * 124.76465 * 180.02562 * 21 20 19 38 38 H 1.08007 * 122.16143 * 180.02562 * 22 21 20 39 39 H 1.08999 * 113.78964 * 270.04512 * 26 14 13 40 40 H 1.09003 * 113.89653 * 138.59304 * 26 14 13 41 41 H 1.09000 * 109.53154 * 182.51600 * 27 12 11 42 42 H 1.09000 * 109.59592 * 62.33084 * 27 12 11 43 43 H 1.09007 * 109.58890 * 244.26090 * 28 9 7 44 44 H 1.08998 * 109.59146 * 4.69340 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7466 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0528 -1.2237 -0.2805 9 7 1.3746 -2.3595 0.3630 10 6 0.2471 -2.3268 1.3037 11 6 0.5495 -3.2595 2.4765 12 6 0.9354 -4.6345 1.9369 13 6 1.0490 -5.7121 3.0241 14 7 0.3482 -6.5982 2.0730 15 6 0.2848 -7.9329 1.8977 16 8 -0.3956 -8.3975 1.0016 17 6 1.0342 -8.8245 2.7856 18 6 1.0562 -10.1972 2.7152 19 6 1.8943 -10.6614 3.7451 20 16 2.5403 -12.1346 4.4600 21 6 3.4319 -11.2104 5.6575 22 6 3.2260 -9.9098 5.4879 23 6 2.3754 -9.5632 4.4331 24 7 1.8429 -8.4295 3.8306 25 1 2.0105 -7.5132 4.1014 26 6 -0.2546 -5.4356 1.3906 27 6 2.1313 -4.5941 0.9887 28 6 1.8145 -3.6519 -0.1789 29 1 -0.4850 0.8400 -0.0004 30 1 0.1088 -1.3107 1.6733 31 1 -0.6596 -2.6610 0.7993 32 1 -0.3339 -3.3508 3.1085 33 1 1.3749 -2.8522 3.0604 34 1 2.0738 -6.0169 3.2356 35 1 0.4748 -5.4911 3.9238 36 1 0.5270 -10.8081 1.9988 37 1 4.0603 -11.6397 6.4238 38 1 3.6857 -9.1673 6.1235 39 1 -1.2161 -5.1325 1.8049 40 1 -0.2667 -5.5190 0.3038 41 1 2.3267 -5.5958 0.6058 42 1 3.0091 -4.2304 1.5226 43 1 1.0206 -4.0813 -0.7900 44 1 2.7086 -3.5085 -0.7856 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050723744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:33 Heat of formation + Delta-G solvation = 99.346613 kcal Electronic energy + Delta-G solvation = -27582.051803 eV Core-core repulsion = 23821.744270 eV Total energy + Delta-G solvation = -3760.307533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -41.66827 -40.52299 -38.25502 -35.98090 -35.53413 -32.60709 -31.26879 -30.76503 -29.95719 -28.75468 -27.05017 -26.36718 -24.35990 -23.50599 -22.52938 -22.14142 -20.84790 -20.72744 -19.44974 -18.22887 -18.14381 -16.85187 -16.39275 -16.03351 -15.89436 -15.62530 -14.96898 -14.91575 -14.42210 -14.14479 -13.88053 -13.82447 -13.71497 -13.62184 -13.30828 -12.98211 -12.79310 -12.36324 -12.14668 -12.01180 -11.90159 -11.75350 -11.52612 -11.13491 -11.11773 -10.77581 -10.59978 -10.45617 -10.27992 -10.14645 -9.99686 -9.93887 -9.72788 -9.48347 -8.81102 -8.51654 -8.32347 -7.92899 -6.73465 -5.85370 -3.28141 0.50587 1.26978 1.72520 1.80115 2.48199 2.52749 2.74326 3.21774 3.34093 3.40439 3.41158 4.22591 4.39742 4.44444 4.46624 4.69796 4.88972 4.98363 5.06781 5.12109 5.18135 5.32823 5.33572 5.44987 5.46894 5.52057 5.54583 5.71295 5.74151 5.83124 5.94954 5.96076 6.16009 6.20980 6.33040 6.41729 6.46598 6.48831 6.55836 6.71734 6.86750 7.02558 7.23711 7.55412 7.57302 7.73810 7.99512 8.39307 9.15081 9.78229 10.34192 11.22988 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.025571 B = 0.002243 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.715653 B =12479.031381 C =13015.364938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.128 4.128 12 C -0.069 4.069 13 C 0.089 3.911 14 N -0.638 5.638 15 C 0.604 3.396 16 O -0.526 6.526 17 C 0.020 3.980 18 C -0.077 4.077 19 C -0.218 4.218 20 S 0.128 5.872 21 C -0.190 4.190 22 C -0.113 4.113 23 C 0.060 3.940 24 N -0.540 5.540 25 H 0.419 0.581 26 C 0.122 3.878 27 C -0.110 4.110 28 C 0.147 3.853 29 H 0.255 0.745 30 H 0.091 0.909 31 H 0.019 0.981 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.157 0.843 37 H 0.172 0.828 38 H 0.141 0.859 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.020 0.980 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.766 -19.396 13.184 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.167 4.167 12 C -0.070 4.070 13 C -0.034 4.034 14 N -0.373 5.373 15 C 0.393 3.607 16 O -0.403 6.403 17 C -0.095 4.095 18 C -0.107 4.107 19 C -0.338 4.338 20 S 0.387 5.613 21 C -0.326 4.326 22 C -0.147 4.147 23 C -0.058 4.058 24 N -0.145 5.145 25 H 0.260 0.740 26 C 0.001 3.999 27 C -0.149 4.149 28 C 0.020 3.980 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.174 0.826 37 H 0.190 0.810 38 H 0.159 0.841 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.038 0.962 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.130 -21.037 12.364 24.748 hybrid contribution 0.705 2.796 0.650 2.955 sum 4.835 -18.241 13.013 22.923 Atomic orbital electron populations 1.70012 1.05257 1.25719 1.53516 1.25030 0.95253 0.98431 1.00758 0.86389 0.78965 0.83388 0.78150 1.20865 1.21626 1.21050 1.19126 0.92773 0.84953 1.41622 0.91791 1.43990 1.37147 1.01371 1.48712 1.20686 0.88899 0.98708 0.87275 1.22083 1.00285 0.93960 1.00413 1.21965 0.96197 0.94349 0.94447 1.23639 0.96393 0.88435 0.94897 1.50019 1.49198 1.03449 1.34587 1.16580 0.80792 0.79907 0.83405 1.90875 1.41810 1.74769 1.32846 1.20364 1.01243 0.93912 0.93996 1.20399 1.00423 0.91281 0.98642 1.22681 1.09503 0.96610 1.04990 1.83907 1.45809 1.04736 1.26814 1.25225 1.06454 0.96181 1.04730 1.18908 1.00947 0.96576 0.98244 1.18397 1.02652 0.85871 0.98921 1.42389 1.38578 1.07612 1.25970 0.73973 1.23336 0.97165 0.79772 0.99643 1.21796 0.95636 0.99550 0.97921 1.20878 0.97761 0.86830 0.92490 0.93511 0.89134 0.96260 0.92691 0.91873 0.90974 0.89172 0.82586 0.81026 0.84130 0.89412 0.89423 0.92906 0.91690 0.96222 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.13 11.22 55.49 0.62 -24.51 16 2 C 0.00 0.11 4.89 -17.44 -0.09 0.02 16 3 Si 0.90 20.95 29.59 -169.99 -5.03 15.92 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.67 9.56 -15.06 -0.14 -6.82 16 8 H 0.06 1.65 7.89 -52.49 -0.41 1.24 16 9 N -0.59 -13.76 2.97 -172.50 -0.51 -14.27 16 10 C 0.17 3.67 5.21 -3.91 -0.02 3.65 16 11 C -0.13 -2.05 5.24 -26.97 -0.14 -2.19 16 12 C -0.07 -0.98 0.77 -154.42 -0.12 -1.10 16 13 C 0.09 0.99 6.48 -3.16 -0.02 0.97 16 14 N -0.64 -8.73 3.44 -181.84 -0.63 -9.35 16 15 C 0.60 9.21 8.01 -12.96 -0.10 9.10 16 16 O -0.53 -9.75 17.59 5.16 0.09 -9.66 16 17 C 0.02 0.26 6.97 -82.10 -0.57 -0.31 16 18 C -0.08 -0.99 10.60 -38.95 -0.41 -1.40 16 19 C -0.22 -2.54 7.26 -38.67 -0.28 -2.82 16 20 S 0.13 1.13 23.31 -107.50 -2.51 -1.37 16 21 C -0.19 -1.39 11.13 28.86 0.32 -1.07 16 22 C -0.11 -0.95 10.16 -40.85 -0.42 -1.36 16 23 C 0.06 0.65 7.67 -84.01 -0.64 0.01 16 24 N -0.54 -5.87 6.03 -7.34 -0.04 -5.92 16 25 H 0.42 3.69 5.69 -40.81 -0.23 3.46 16 26 C 0.12 1.78 7.62 -3.15 -0.02 1.76 16 27 C -0.11 -1.73 5.22 -26.73 -0.14 -1.87 16 28 C 0.15 2.89 6.38 -3.66 -0.02 2.87 16 29 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.09 2.24 5.98 -51.93 -0.31 1.92 16 31 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 35 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 37 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.09 1.20 8.07 -51.93 -0.42 0.78 16 40 H 0.09 1.42 7.41 -51.93 -0.38 1.03 16 41 H 0.05 0.80 8.01 -51.93 -0.42 0.38 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.40 7.49 -51.92 -0.39 0.01 16 44 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -31.10 366.58 -11.13 -42.22 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.82 Total: 1.95 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.82 Total: -0.53 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.56 Total: -54.05 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.51 Total: -1.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.10 -11.13 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050723744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.569 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds