Wall clock time and date at job start Wed Apr 1 2020 03:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30013 * 127.33329 * 2 1 4 4 O 1.20659 * 112.30375 * 180.02562 * 3 2 1 5 5 C 1.33494 * 113.15258 * 0.02562 * 4 3 2 6 6 C 1.50707 * 126.82917 * 180.02562 * 5 4 3 7 7 F 1.39897 * 109.46984 * 124.23893 * 6 5 4 8 8 F 1.39900 * 109.47052 * 244.23861 * 6 5 4 9 9 C 1.37364 * 106.34536 * 359.97438 * 5 4 3 10 10 C 1.47391 * 128.56674 * 179.97438 * 9 5 4 11 11 O 1.21607 * 120.00168 * 265.54681 * 10 9 5 12 12 N 1.34775 * 120.00278 * 85.54947 * 10 9 5 13 13 C 1.46500 * 120.00140 * 184.34465 * 12 10 9 14 14 C 1.53005 * 109.46801 * 185.26160 * 13 12 10 15 15 H 1.08998 * 109.68218 * 306.38811 * 14 13 12 16 16 C 1.53294 * 109.68423 * 66.91120 * 14 13 12 17 17 O 1.42962 * 109.22332 * 172.02325 * 16 14 13 18 18 C 1.42966 * 114.16609 * 297.42018 * 17 16 14 19 19 C 1.53292 * 109.22520 * 62.57835 * 18 17 16 20 20 N 1.47157 * 109.67912 * 185.87454 * 14 13 12 21 21 C 1.36935 * 120.98112 * 9.71499 * 20 14 13 22 22 H 1.08006 * 120.00146 * 329.20998 * 21 20 14 23 23 C 1.38808 * 120.00134 * 149.21917 * 21 20 14 24 24 N 1.31618 * 120.00295 * 348.27234 * 23 21 20 25 25 Si 1.86801 * 120.00031 * 168.26884 * 23 21 20 26 26 H 1.48503 * 109.47286 * 5.01156 * 25 23 21 27 27 H 1.48504 * 109.47083 * 125.00912 * 25 23 21 28 28 H 1.48493 * 109.47429 * 245.00546 * 25 23 21 29 29 H 1.09003 * 109.47273 * 89.97177 * 1 2 3 30 30 H 1.08997 * 109.47282 * 209.96926 * 1 2 3 31 31 H 1.08998 * 109.47571 * 329.97003 * 1 2 3 32 32 H 1.08998 * 109.46732 * 4.24226 * 6 5 4 33 33 H 0.97007 * 119.99904 * 4.33994 * 12 10 9 34 34 H 1.08995 * 109.47385 * 305.25745 * 13 12 10 35 35 H 1.09001 * 109.47424 * 65.26304 * 13 12 10 36 36 H 1.09001 * 109.50903 * 291.94642 * 16 14 13 37 37 H 1.08999 * 109.51159 * 52.04540 * 16 14 13 38 38 H 1.08994 * 109.51089 * 182.50597 * 18 17 16 39 39 H 1.09004 * 109.50955 * 302.65531 * 18 17 16 40 40 H 1.09005 * 109.67667 * 67.42260 * 19 18 17 41 41 H 1.08994 * 109.68042 * 187.93712 * 19 18 17 42 42 H 0.96999 * 120.00329 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7209 -0.0005 5 6 3.6494 -0.6007 -0.0015 6 6 4.9712 -1.3245 -0.0018 7 9 5.0235 -2.2003 1.0880 8 9 5.1051 -2.0504 -1.1902 9 6 2.3991 -1.1696 -0.0010 10 6 2.0401 -2.5991 -0.0022 11 8 1.8117 -3.1679 -1.0525 12 7 1.9648 -3.2761 1.1608 13 6 1.7017 -4.7172 1.1539 14 6 1.5364 -5.2124 2.5921 15 1 2.4010 -4.9139 3.1848 16 6 0.2623 -4.6152 3.2005 17 8 0.0167 -5.2245 4.4703 18 6 -0.2227 -6.6326 4.4073 19 6 1.0264 -7.3331 3.8606 20 7 1.4123 -6.6787 2.6003 21 6 1.6475 -7.4123 1.4682 22 1 1.4405 -6.9878 0.4968 23 6 2.1519 -8.7015 1.5689 24 7 2.6197 -9.1372 2.7194 25 14 2.1668 -9.8183 0.0715 26 1 1.7032 -9.0586 -1.1173 27 1 3.5474 -10.3120 -0.1641 28 1 1.2618 -10.9721 0.3055 29 1 -0.3634 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5133 31 1 -0.3634 0.8897 0.5143 32 1 5.7821 -0.6002 0.0750 33 1 2.0848 -2.8090 2.0025 34 1 0.7885 -4.9172 0.5936 35 1 2.5371 -5.2368 0.6845 36 1 0.3903 -3.5406 3.3310 37 1 -0.5811 -4.8035 2.5362 38 1 -0.4438 -7.0093 5.4058 39 1 -1.0682 -6.8289 3.7478 40 1 1.8397 -7.2485 4.5815 41 1 0.8067 -8.3847 3.6768 42 1 2.9719 -10.0383 2.7898 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050978668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:31 Heat of formation + Delta-G solvation = -108.542252 kcal Electronic energy + Delta-G solvation = -31494.687466 eV Core-core repulsion = 26728.382795 eV Total energy + Delta-G solvation = -4766.304671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.133 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.28192 -48.31216 -46.24007 -41.03447 -39.98249 -36.88594 -35.94213 -35.84453 -34.26276 -33.27985 -32.08997 -29.96478 -29.00594 -28.38435 -27.38268 -25.41938 -25.26942 -23.30415 -22.29868 -21.75692 -21.32175 -19.74902 -19.32206 -18.77821 -18.52296 -18.22575 -18.15046 -17.59486 -17.24068 -16.90298 -16.71916 -16.23731 -15.99386 -15.49077 -15.44791 -15.24427 -15.15959 -14.73090 -14.69568 -14.64613 -14.49117 -14.36742 -14.29341 -13.74394 -13.70238 -13.12042 -12.95051 -12.80979 -12.73021 -12.61409 -12.44105 -12.09946 -12.07675 -11.92554 -11.60911 -11.31382 -11.15923 -11.13402 -10.73048 -10.58984 -10.29573 -8.69871 -7.91894 -5.43939 -0.29959 0.57852 0.99440 1.11127 1.43021 1.46674 1.55666 1.82784 2.45550 2.67850 2.82740 2.91266 2.97534 3.23082 3.25208 3.42512 3.52224 3.63438 3.70460 3.88756 3.93532 4.04863 4.22193 4.29241 4.40815 4.51994 4.53336 4.60398 4.63666 4.65704 4.90812 4.94027 5.01517 5.01954 5.12496 5.29525 5.58069 5.63025 6.21561 6.25937 6.34306 6.80487 6.87626 7.06581 7.71878 8.26113 9.13566 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012084 B = 0.003587 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.469140 B = 7804.719256 C = 8903.622659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.060 3.940 3 N -0.348 5.348 4 O 0.136 5.864 5 C -0.064 4.064 6 C 0.352 3.648 7 F -0.187 7.187 8 F -0.194 7.194 9 C -0.214 4.214 10 C 0.594 3.406 11 O -0.557 6.557 12 N -0.693 5.693 13 C 0.148 3.852 14 C 0.131 3.869 15 H 0.035 0.965 16 C 0.058 3.942 17 O -0.396 6.396 18 C 0.048 3.952 19 C 0.150 3.850 20 N -0.604 5.604 21 C -0.262 4.262 22 H 0.070 0.930 23 C -0.038 4.038 24 N -0.929 5.929 25 Si 0.959 3.041 26 H -0.271 1.271 27 H -0.293 1.293 28 H -0.285 1.285 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.206 0.794 33 H 0.415 0.585 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.116 0.884 37 H 0.049 0.951 38 H 0.108 0.892 39 H 0.046 0.954 40 H 0.005 0.995 41 H 0.066 0.934 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 20.684 -1.090 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 N -0.050 5.050 4 O 0.070 5.930 5 C -0.130 4.130 6 C 0.298 3.702 7 F -0.168 7.168 8 F -0.175 7.175 9 C -0.221 4.221 10 C 0.378 3.622 11 O -0.435 6.435 12 N -0.344 5.344 13 C 0.024 3.976 14 C 0.025 3.975 15 H 0.053 0.947 16 C -0.020 4.020 17 O -0.315 6.315 18 C -0.030 4.030 19 C 0.025 3.975 20 N -0.330 5.330 21 C -0.392 4.392 22 H 0.088 0.912 23 C -0.235 4.235 24 N -0.575 5.575 25 Si 0.787 3.213 26 H -0.196 1.196 27 H -0.220 1.220 28 H -0.211 1.211 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.223 0.777 33 H 0.252 0.748 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.134 0.866 37 H 0.067 0.933 38 H 0.126 0.874 39 H 0.065 0.935 40 H 0.023 0.977 41 H 0.085 0.915 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.637 21.470 -1.624 21.541 hybrid contribution 0.307 -2.109 -0.632 2.223 sum -0.330 19.361 -2.256 19.495 Atomic orbital electron populations 1.20465 0.82603 1.05759 1.05161 1.25218 1.00063 0.84884 0.99909 1.73603 0.89156 1.23015 1.19244 1.84557 1.21480 1.20230 1.66747 1.25292 0.97385 0.85723 1.04569 1.20029 0.92997 0.85628 0.71541 1.93114 1.96868 1.72121 1.54684 1.93105 1.96187 1.80274 1.47951 1.22111 0.93853 0.95134 1.10991 1.17013 0.77072 0.84245 0.83849 1.90860 1.50138 1.69867 1.32659 1.45773 1.70819 1.09341 1.08510 1.21156 1.01123 0.78180 0.97101 1.21357 0.96963 0.85721 0.93504 0.94720 1.23099 0.95998 0.97688 0.85236 1.87794 1.91724 1.22113 1.29841 1.23214 0.97064 0.80902 1.01805 1.21269 0.93099 0.97073 0.86110 1.44200 1.80224 1.00199 1.08407 1.19401 1.36254 0.96764 0.86801 0.91244 1.25794 0.97900 1.00726 0.99033 1.70125 1.44170 1.17619 1.25553 0.85337 0.76883 0.79104 0.79947 1.19612 1.21988 1.21139 0.88581 0.88983 0.87510 0.77724 0.74825 0.91588 0.92799 0.86597 0.93302 0.87395 0.93517 0.97665 0.91531 0.93910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.49 71.23 0.75 -0.46 16 2 C 0.06 1.24 7.59 45.16 0.34 1.58 16 3 N -0.35 -7.09 12.01 -44.78 -0.54 -7.63 16 4 O 0.14 2.46 11.06 76.97 0.85 3.31 16 5 C -0.06 -1.26 6.98 25.48 0.18 -1.08 16 6 C 0.35 5.81 5.68 71.24 0.40 6.22 16 7 F -0.19 -4.05 17.32 44.97 0.78 -3.27 16 8 F -0.19 -4.63 17.32 44.97 0.78 -3.85 16 9 C -0.21 -5.16 6.25 -18.75 -0.12 -5.27 16 10 C 0.59 18.20 7.63 86.65 0.66 18.86 16 11 O -0.56 -22.08 17.08 -4.05 -0.07 -22.15 16 12 N -0.69 -19.75 5.32 -466.41 -2.48 -22.23 16 13 C 0.15 5.44 3.89 86.38 0.34 5.78 16 14 C 0.13 5.05 3.15 44.97 0.14 5.19 16 15 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 16 C 0.06 1.84 6.09 72.08 0.44 2.28 16 17 O -0.40 -14.12 10.74 -148.98 -1.60 -15.72 16 18 C 0.05 1.76 6.99 72.08 0.50 2.26 16 19 C 0.15 6.99 5.38 86.35 0.46 7.45 16 20 N -0.60 -29.06 3.03 -673.69 -2.04 -31.10 16 21 C -0.26 -13.91 8.55 84.03 0.72 -13.19 16 22 H 0.07 3.67 6.37 -2.91 -0.02 3.65 16 23 C -0.04 -2.08 5.04 84.86 0.43 -1.65 16 24 N -0.93 -53.39 11.17 21.65 0.24 -53.15 16 25 Si 0.96 44.72 29.57 68.60 2.03 46.75 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.21 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.41 9.37 8.02 -92.70 -0.74 8.62 16 34 H 0.07 2.57 7.84 -2.39 -0.02 2.55 16 35 H 0.05 2.36 7.18 -2.39 -0.02 2.35 16 36 H 0.12 2.79 7.67 -2.39 -0.02 2.77 16 37 H 0.05 1.57 8.12 -2.39 -0.02 1.55 16 38 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 41 H 0.07 3.45 6.34 -2.39 -0.02 3.43 16 42 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -72.37 364.64 3.54 -68.83 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.34 Total: 12.24 kcal Atomic # 6 Polarization: 22.71 SS G_CDS: 5.25 Total: 27.96 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -4.82 Total: -114.11 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.82 Total: -34.56 kcal Atomic # 9 Polarization: -8.68 SS G_CDS: 1.56 Total: -7.12 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -72.37 3.54 -68.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050978668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.711 kcal (2) G-P(sol) polarization free energy of solvation -72.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds