Wall clock time and date at job start Wed Apr 1 2020 03:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00002 * 2 1 4 4 H 1.48498 * 109.47477 * 239.99808 * 3 2 1 5 5 H 1.48507 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47079 * 119.99573 * 3 2 1 7 7 C 1.38806 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99882 * 196.75195 * 7 2 1 9 9 N 1.36935 * 120.00218 * 17.02219 * 7 2 1 10 10 C 1.44577 * 118.64603 * 206.97284 * 9 7 2 11 11 C 1.54864 * 109.59997 * 270.70802 * 10 9 7 12 12 C 1.47091 * 110.32048 * 288.73152 * 11 10 9 13 13 C 1.52567 * 114.32574 * 62.80715 * 12 11 10 14 14 H 1.09002 * 109.48971 * 34.94715 * 13 12 11 15 15 N 1.46503 * 109.49043 * 155.01660 * 13 12 11 16 16 C 1.34770 * 119.99953 * 204.99535 * 15 13 12 17 17 O 1.21591 * 120.00418 * 0.02562 * 16 15 13 18 18 C 1.47561 * 119.99857 * 180.02562 * 16 15 13 19 19 C 1.40122 * 120.59042 * 0.02562 * 18 16 15 20 20 N 1.30609 * 121.17499 * 179.97438 * 19 18 16 21 21 C 1.34908 * 122.44598 * 359.97438 * 20 19 18 22 22 C 1.40618 * 128.46224 * 180.02562 * 21 20 19 23 23 C 1.32282 * 115.91258 * 179.97438 * 22 21 20 24 24 S 1.75503 * 110.83679 * 359.97438 * 23 22 21 25 25 C 1.40094 * 119.27331 * 0.02562 * 21 20 19 26 26 C 1.39368 * 119.75294 * 359.74098 * 25 21 20 27 27 C 1.50883 * 109.35822 * 274.98114 * 13 12 11 28 28 C 1.47601 * 118.64052 * 26.70840 * 9 7 2 29 29 H 0.97003 * 119.99916 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.44645 * 30.74793 * 10 9 7 31 31 H 1.09003 * 109.44613 * 150.66770 * 10 9 7 32 32 H 1.08993 * 109.32892 * 48.99738 * 11 10 9 33 33 H 1.08999 * 109.32229 * 168.64462 * 11 10 9 34 34 H 1.09007 * 108.50863 * 184.05938 * 12 11 10 35 35 H 1.08994 * 108.51693 * 301.70099 * 12 11 10 36 36 H 0.96997 * 119.99679 * 25.00024 * 15 13 12 37 37 H 1.07996 * 119.41276 * 359.97438 * 19 18 16 38 38 H 1.08000 * 122.04513 * 359.96367 * 22 21 20 39 39 H 1.08003 * 124.58250 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.73746 * 180.26423 * 26 25 21 41 41 H 1.08992 * 109.36597 * 212.07718 * 27 13 12 42 42 H 1.09004 * 109.36465 * 331.70166 * 27 13 12 43 43 H 1.08998 * 108.95194 * 258.57681 * 28 9 7 44 44 H 1.09003 * 108.94596 * 17.20450 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0559 -1.2218 0.2702 9 7 1.3706 -2.3622 -0.3461 10 6 1.8588 -3.6110 0.1946 11 6 2.9372 -4.1992 -0.7485 12 6 2.3176 -4.6931 -1.9878 13 6 1.6343 -3.6140 -2.8222 14 1 2.1937 -2.6822 -2.7402 15 7 1.5891 -4.0358 -4.2245 16 6 1.5138 -3.1129 -5.2037 17 8 1.4838 -1.9301 -4.9234 18 6 1.4678 -3.5378 -6.6160 19 6 1.5011 -4.8975 -6.9531 20 7 1.4605 -5.2863 -8.1993 21 6 1.3845 -4.4157 -9.2270 22 6 1.3336 -4.6914 -10.6050 23 6 1.2606 -3.6388 -11.4028 24 16 1.2476 -2.1504 -10.4730 25 6 1.3476 -3.0411 -8.9590 26 6 1.3843 -2.5923 -7.6401 27 6 0.2291 -3.4040 -2.3142 28 6 0.2075 -2.2854 -1.2516 29 1 -0.4850 0.8401 -0.0004 30 1 2.2938 -3.4352 1.1784 31 1 1.0319 -4.3155 0.2844 32 1 3.6643 -3.4247 -0.9925 33 1 3.4434 -5.0242 -0.2474 34 1 3.0894 -5.1645 -2.5965 35 1 1.5756 -5.4476 -1.7269 36 1 1.6134 -4.9794 -4.4481 37 1 1.5615 -5.6371 -6.1684 38 1 1.3530 -5.7008 -10.9885 39 1 1.2152 -3.6886 -12.4807 40 1 1.3524 -1.5365 -7.4152 41 1 -0.4179 -3.1252 -3.1458 42 1 -0.1363 -4.3293 -1.8687 43 1 -0.7058 -2.3696 -0.6627 44 1 0.2141 -1.3186 -1.7550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052623708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:16 Heat of formation + Delta-G solvation = 26.886403 kcal Electronic energy + Delta-G solvation = -27508.421404 eV Core-core repulsion = 23744.971761 eV Total energy + Delta-G solvation = -3763.449643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.90298 -40.71515 -39.16588 -36.75032 -36.38494 -34.53387 -33.70445 -32.73898 -32.40418 -30.72205 -27.85854 -26.41078 -25.51986 -25.11536 -24.60065 -22.81974 -21.69471 -21.49997 -20.98973 -19.56371 -18.56802 -18.17492 -17.81486 -17.31568 -17.08596 -16.67670 -16.31326 -16.02784 -15.75997 -15.40636 -15.31005 -15.04462 -14.82552 -14.51483 -14.26660 -14.07669 -13.94607 -13.67421 -13.59526 -13.28114 -13.01445 -12.80811 -12.72428 -12.53459 -12.18550 -12.10269 -12.02618 -11.74367 -11.64652 -11.50815 -11.40597 -11.32933 -11.25557 -10.60025 -10.42810 -10.19971 -9.84328 -9.10958 -8.63204 -7.85681 -5.30384 -0.98140 -0.15470 0.26514 0.80579 0.83510 1.40294 1.46016 1.50291 1.83815 2.02577 2.50643 2.64764 2.93344 3.28627 3.45137 3.51962 3.63916 3.71642 3.81865 3.90134 4.04555 4.11225 4.36556 4.41088 4.47742 4.49469 4.62808 4.70243 4.73715 4.85712 4.89421 4.96398 5.02891 5.03979 5.16940 5.24457 5.25544 5.27766 5.36806 5.51765 5.58460 5.63396 5.71508 5.77620 6.42063 6.48785 6.58462 7.18459 7.19480 7.98046 8.35872 9.19078 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.002685 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.291829 B =10424.815237 C =11723.205063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.955 3.045 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.603 5.603 10 C 0.147 3.853 11 C -0.132 4.132 12 C -0.104 4.104 13 C 0.163 3.837 14 H 0.052 0.948 15 N -0.699 5.699 16 C 0.559 3.441 17 O -0.578 6.578 18 C -0.188 4.188 19 C 0.168 3.832 20 N -0.473 5.473 21 C 0.135 3.865 22 C -0.139 4.139 23 C -0.138 4.138 24 S 0.134 5.866 25 C -0.234 4.234 26 C 0.019 3.981 27 C -0.132 4.132 28 C 0.195 3.805 29 H 0.246 0.754 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.415 0.585 37 H 0.199 0.801 38 H 0.177 0.823 39 H 0.219 0.781 40 H 0.140 0.860 41 H 0.048 0.952 42 H 0.078 0.922 43 H -0.002 1.002 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.334 -15.669 -22.876 27.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.784 3.216 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.326 5.326 10 C 0.021 3.979 11 C -0.173 4.173 12 C -0.142 4.142 13 C 0.058 3.942 14 H 0.071 0.929 15 N -0.351 5.351 16 C 0.346 3.654 17 O -0.458 6.458 18 C -0.196 4.196 19 C -0.004 4.004 20 N -0.182 5.182 21 C 0.001 3.999 22 C -0.168 4.168 23 C -0.274 4.274 24 S 0.397 5.603 25 C -0.351 4.351 26 C -0.011 4.011 27 C -0.172 4.172 28 C 0.069 3.931 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.254 0.746 37 H 0.216 0.784 38 H 0.194 0.806 39 H 0.236 0.764 40 H 0.158 0.842 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.016 0.984 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.135 -14.103 -23.380 27.483 hybrid contribution 0.111 0.810 0.916 1.228 sum 3.247 -13.292 -22.464 26.303 Atomic orbital electron populations 1.70201 1.06507 1.25488 1.55838 1.25704 0.95949 1.01297 1.01553 0.85526 0.77822 0.80185 0.78112 1.21524 1.22083 1.19424 1.19421 0.92832 0.86589 1.40233 0.91802 1.43842 1.34176 1.02711 1.51864 1.20970 0.95336 0.86857 0.94786 1.21286 0.98795 1.00281 0.96900 1.20542 1.00770 0.96647 0.96234 1.20245 0.96159 0.98849 0.78901 0.92936 1.45909 1.73578 1.09976 1.05665 1.18223 0.76140 0.85565 0.85514 1.90869 1.51371 1.19133 1.84450 1.20780 1.09692 0.96260 0.92895 1.23249 0.90787 0.92698 0.93693 1.67658 1.13471 1.37614 0.99432 1.19804 0.97347 0.87660 0.95102 1.19879 1.05607 1.02769 0.88584 1.25963 1.02103 0.93531 1.05830 1.84474 1.75539 1.07879 0.92376 1.23732 1.12511 0.99400 0.99455 1.21064 0.89798 1.00759 0.89461 1.22296 0.96690 0.99985 0.98213 1.20654 0.87932 0.95381 0.89138 0.94473 0.94436 0.93224 0.94477 0.89071 0.89894 0.89790 0.74607 0.78402 0.80608 0.76402 0.84207 0.93341 0.90329 0.98419 0.95608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.35 11.12 21.65 0.24 -58.11 16 2 C -0.05 -2.94 4.83 84.86 0.41 -2.53 16 3 Si 0.95 48.14 29.59 68.60 2.03 50.17 16 4 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 5 H -0.29 -14.89 7.11 99.48 0.71 -14.19 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.26 -14.81 9.43 84.03 0.79 -14.01 16 8 H 0.06 3.55 7.88 -2.91 -0.02 3.53 16 9 N -0.60 -30.47 2.26 -697.67 -1.58 -32.05 16 10 C 0.15 5.78 5.65 87.37 0.49 6.27 16 11 C -0.13 -4.08 5.74 29.39 0.17 -3.91 16 12 C -0.10 -2.71 4.69 28.61 0.13 -2.58 16 13 C 0.16 5.53 2.07 44.16 0.09 5.62 16 14 H 0.05 2.40 6.92 -2.39 -0.02 2.39 16 15 N -0.70 -18.65 4.89 -449.66 -2.20 -20.84 16 16 C 0.56 18.14 7.59 86.70 0.66 18.80 16 17 O -0.58 -25.62 16.07 -4.00 -0.06 -25.68 16 18 C -0.19 -4.87 5.89 -20.02 -0.12 -4.98 16 19 C 0.17 3.37 10.69 85.33 0.91 4.28 16 20 N -0.47 -10.25 10.39 -188.74 -1.96 -12.21 16 21 C 0.14 2.82 6.97 39.70 0.28 3.09 16 22 C -0.14 -1.91 10.16 21.79 0.22 -1.69 16 23 C -0.14 -1.35 11.08 66.76 0.74 -0.61 16 24 S 0.13 2.07 23.29 -56.49 -1.32 0.75 16 25 C -0.23 -5.20 6.49 22.99 0.15 -5.05 16 26 C 0.02 0.51 9.73 22.88 0.22 0.73 16 27 C -0.13 -5.03 5.39 30.35 0.16 -4.86 16 28 C 0.19 9.91 4.71 86.61 0.41 10.32 16 29 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.04 1.52 7.99 -2.39 -0.02 1.50 16 31 H 0.05 1.78 8.06 -2.39 -0.02 1.76 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.08 1.68 8.04 -2.38 -0.02 1.66 16 35 H 0.08 1.80 7.35 -2.39 -0.02 1.78 16 36 H 0.42 6.97 6.66 -92.71 -0.62 6.36 16 37 H 0.20 2.35 6.41 -2.91 -0.02 2.34 16 38 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 39 H 0.22 0.30 8.06 -2.91 -0.02 0.27 16 40 H 0.14 3.94 7.72 -2.91 -0.02 3.92 16 41 H 0.05 1.90 7.85 -2.39 -0.02 1.88 16 42 H 0.08 2.51 7.31 -2.38 -0.02 2.50 16 43 H 0.00 -0.12 8.03 -2.39 -0.02 -0.14 16 44 H 0.03 1.54 6.39 -2.39 -0.02 1.53 16 Total: -1.00 -79.94 367.34 1.30 -78.64 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.42 Total: 10.45 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 5.72 Total: 8.88 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -5.49 Total: -123.22 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.06 Total: -25.68 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.32 Total: 0.75 kcal Total: -79.94 1.30 -78.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052623708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.528 kcal (2) G-P(sol) polarization free energy of solvation -79.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds