Wall clock time and date at job start Wed Apr 1 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99927 * 2 1 4 4 H 1.48506 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47344 * 299.99797 * 3 2 1 6 6 H 1.48503 * 109.47178 * 60.00454 * 3 2 1 7 7 C 1.38808 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00019 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00058 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.88848 * 336.35136 * 10 9 7 12 12 C 1.54152 * 113.80219 * 107.70842 * 10 9 7 13 13 C 1.53954 * 87.22616 * 139.16461 * 12 10 9 14 14 H 1.09003 * 113.66488 * 89.86036 * 13 12 10 15 15 N 1.46496 * 113.65938 * 220.82698 * 13 12 10 16 16 C 1.34777 * 119.99613 * 253.98093 * 15 13 12 17 17 O 1.21727 * 120.00220 * 0.02562 * 16 15 13 18 18 C 1.46496 * 120.00004 * 180.02562 * 16 15 13 19 19 C 1.36109 * 125.71415 * 179.71951 * 18 16 15 20 20 C 1.42222 * 107.62914 * 179.85098 * 19 18 16 21 21 C 1.45593 * 140.78181 * 180.02562 * 20 19 18 22 22 C 1.31811 * 114.63512 * 180.35300 * 21 20 19 23 23 S 1.75355 * 111.24479 * 359.97438 * 22 21 20 24 24 C 1.38178 * 106.99563 * 0.41464 * 20 19 18 25 25 N 1.37463 * 108.16236 * 359.74548 * 24 20 19 26 26 H 0.97001 * 125.67882 * 180.02562 * 25 24 20 27 27 C 1.52908 * 113.66403 * 205.00093 * 10 9 7 28 28 C 1.52917 * 121.13524 * 346.25859 * 27 10 9 29 29 C 1.53948 * 86.78147 * 100.81660 * 28 27 10 30 30 C 1.52912 * 121.13711 * 94.81403 * 27 10 9 31 31 H 0.97001 * 120.00187 * 0.02562 * 1 2 3 32 32 H 0.97004 * 120.00458 * 0.02562 * 9 7 2 33 33 H 1.08994 * 113.58223 * 24.58962 * 12 10 9 34 34 H 1.09002 * 113.63356 * 253.73747 * 12 10 9 35 35 H 0.96996 * 120.00516 * 73.99078 * 15 13 12 36 36 H 1.08002 * 126.18403 * 359.97438 * 19 18 16 37 37 H 1.07998 * 122.68455 * 0.37697 * 21 20 19 38 38 H 1.07999 * 124.38030 * 180.02562 * 22 21 20 39 39 H 1.09001 * 113.66119 * 215.28794 * 28 27 10 40 40 H 1.08997 * 113.66223 * 346.34310 * 28 27 10 41 41 H 1.09000 * 113.58188 * 270.12923 * 29 28 27 42 42 H 1.08998 * 113.58104 * 139.33752 * 29 28 27 43 43 H 1.09008 * 113.66111 * 13.65542 * 30 27 10 44 44 H 1.09003 * 113.66284 * 144.70777 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0665 -3.5640 -0.4033 12 6 1.9975 -4.4101 1.3430 13 6 1.8268 -5.7031 0.5250 14 1 2.7696 -6.1867 0.2692 15 7 0.8453 -6.6316 1.0911 16 6 1.2595 -7.7532 1.7132 17 8 2.4491 -7.9943 1.8050 18 6 0.2781 -8.6821 2.2788 19 6 0.5652 -9.8459 2.9236 20 6 -0.6677 -10.4378 3.3136 21 6 -1.1882 -11.6112 4.0007 22 6 -2.5029 -11.6631 4.0805 23 16 -3.2414 -10.2681 3.3165 24 6 -1.6748 -9.5998 2.8745 25 7 -1.0938 -8.5266 2.2419 26 1 -1.5684 -7.7836 1.8372 27 6 1.2656 -4.8229 -0.5924 28 6 -0.2407 -4.7143 -0.8324 29 6 0.1010 -4.4607 -2.3119 30 6 1.4181 -5.2175 -2.0619 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 1.1254 -4.1571 1.9459 34 1 2.9289 -4.3714 1.9080 35 1 -0.1026 -6.4394 1.0181 36 1 1.5512 -10.2464 3.1076 37 1 -0.5483 -12.3776 4.4124 38 1 -3.0540 -12.4611 4.5558 39 1 -0.7792 -5.6465 -0.6614 40 1 -0.7021 -3.8599 -0.3373 41 1 0.2424 -3.4070 -2.5524 42 1 -0.5680 -4.9679 -3.0071 43 1 2.2819 -4.7649 -2.5490 44 1 1.3459 -6.2910 -2.2364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078692445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:07 Heat of formation + Delta-G solvation = 74.654257 kcal Electronic energy + Delta-G solvation = -27177.822647 eV Core-core repulsion = 23416.444374 eV Total energy + Delta-G solvation = -3761.378273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.47130 -41.74792 -39.85379 -36.33354 -36.30442 -35.80315 -34.09446 -31.85336 -31.55375 -29.55559 -26.84660 -26.51749 -25.60242 -24.82443 -23.93796 -22.83782 -21.85405 -21.24635 -20.67837 -20.14525 -19.64609 -18.66230 -17.83894 -17.54829 -16.60796 -16.41160 -16.30703 -16.23418 -15.85742 -15.59356 -15.41808 -15.27762 -14.86141 -14.55717 -14.39985 -13.90246 -13.71939 -13.53916 -13.22644 -13.14272 -12.92971 -12.80257 -12.77593 -12.61311 -12.34072 -12.29068 -12.04504 -11.88497 -11.74789 -11.48076 -11.38572 -11.05260 -11.03310 -10.75615 -10.56517 -10.03523 -9.29393 -8.97188 -8.65285 -7.95869 -5.22549 0.08464 0.17945 0.43095 1.07767 1.46055 1.47235 1.56327 1.81101 1.91693 2.10490 2.29997 2.55545 3.35127 3.43434 3.53724 3.60407 3.73329 3.81733 3.89056 3.98040 4.01578 4.09304 4.24233 4.40179 4.52463 4.60997 4.64033 4.71333 4.72556 4.77484 4.81893 4.98161 5.06157 5.09720 5.13444 5.17527 5.19573 5.24053 5.42433 5.46853 5.50285 5.59115 5.63515 5.65746 6.11011 6.26934 6.40930 6.99206 7.34561 8.09845 8.34426 9.27229 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.017746 B = 0.002280 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.451110 B =12275.388799 C =12555.052492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.296 1.296 7 C -0.239 4.239 8 H 0.074 0.926 9 N -0.715 5.715 10 C 0.175 3.825 11 H 0.078 0.922 12 C -0.170 4.170 13 C 0.150 3.850 14 H 0.112 0.888 15 N -0.697 5.697 16 C 0.590 3.410 17 O -0.562 6.562 18 C -0.019 4.019 19 C -0.080 4.080 20 C -0.182 4.182 21 C -0.086 4.086 22 C -0.212 4.212 23 S 0.153 5.847 24 C -0.022 4.022 25 N -0.518 5.518 26 H 0.431 0.569 27 C -0.110 4.110 28 C -0.112 4.112 29 C -0.129 4.129 30 C -0.116 4.116 31 H 0.250 0.750 32 H 0.379 0.621 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.405 0.595 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.202 0.798 39 H 0.103 0.897 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.305 -25.399 4.093 26.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.224 1.224 7 C -0.371 4.371 8 H 0.092 0.908 9 N -0.353 5.353 10 C 0.064 3.936 11 H 0.096 0.904 12 C -0.212 4.212 13 C 0.045 3.955 14 H 0.130 0.870 15 N -0.347 5.347 16 C 0.377 3.623 17 O -0.441 6.441 18 C -0.132 4.132 19 C -0.109 4.109 20 C -0.194 4.194 21 C -0.116 4.116 22 C -0.346 4.346 23 S 0.406 5.594 24 C -0.251 4.251 25 N -0.122 5.122 26 H 0.271 0.729 27 C -0.113 4.113 28 C -0.149 4.149 29 C -0.167 4.167 30 C -0.153 4.153 31 H 0.059 0.941 32 H 0.213 0.787 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.242 0.758 36 H 0.175 0.825 37 H 0.182 0.818 38 H 0.218 0.782 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.780 -24.804 3.851 26.279 hybrid contribution 0.967 1.514 0.115 1.800 sum -6.813 -23.290 3.966 24.588 Atomic orbital electron populations 1.69793 1.06370 1.25854 1.59665 1.25452 0.96323 1.00727 1.03933 0.85169 0.78312 0.80360 0.76512 1.19274 1.22146 1.22362 1.19686 0.91456 0.85338 1.40635 0.90809 1.42431 1.05549 1.00264 1.87068 1.21341 0.94930 0.83769 0.93521 0.90403 1.24167 1.01284 0.96428 0.99344 1.22029 0.92775 0.86911 0.93790 0.87028 1.45703 1.10668 1.21460 1.56867 1.17156 0.87100 0.80467 0.77534 1.90842 1.17167 1.76007 1.60099 1.19839 0.81885 1.00058 1.11405 1.20916 0.98065 0.93075 0.98803 1.19739 0.92669 0.98403 1.08633 1.20554 0.95134 0.96504 0.99437 1.25317 0.97449 1.03240 1.08550 1.83989 0.98379 1.17475 1.59507 1.24015 1.00673 0.94431 1.05966 1.41333 1.04361 1.19585 1.46943 0.72897 1.23379 0.97680 0.95830 0.94372 1.22470 0.93737 1.01585 0.97156 1.22631 0.97765 0.99932 0.96329 1.22712 0.98003 1.00561 0.94060 0.94099 0.78707 0.91254 0.92322 0.75821 0.82505 0.81810 0.78152 0.87907 0.92824 0.92563 0.89981 0.91897 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.46 13.06 21.65 0.28 -57.18 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 7 C -0.24 -12.90 9.97 84.03 0.84 -12.06 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.71 -34.10 5.33 -321.24 -1.71 -35.82 16 10 C 0.18 6.61 4.36 45.35 0.20 6.81 16 11 H 0.08 2.99 8.10 -2.39 -0.02 2.97 16 12 C -0.17 -5.83 7.70 31.30 0.24 -5.59 16 13 C 0.15 4.26 4.09 45.28 0.19 4.44 16 14 H 0.11 3.32 7.50 -2.39 -0.02 3.30 16 15 N -0.70 -16.75 5.27 -445.27 -2.35 -19.10 16 16 C 0.59 16.00 7.78 86.39 0.67 16.67 16 17 O -0.56 -19.21 16.47 -4.43 -0.07 -19.28 16 18 C -0.02 -0.43 6.97 39.81 0.28 -0.15 16 19 C -0.08 -1.86 10.58 22.76 0.24 -1.62 16 20 C -0.18 -3.70 6.80 -20.41 -0.14 -3.84 16 21 C -0.09 -1.25 10.42 23.39 0.24 -1.01 16 22 C -0.21 -2.38 11.03 67.05 0.74 -1.64 16 23 S 0.15 2.06 23.24 -56.49 -1.31 0.75 16 24 C -0.02 -0.41 8.41 83.80 0.70 0.29 16 25 N -0.52 -9.53 6.08 -179.04 -1.09 -10.62 16 26 H 0.43 5.67 8.14 -92.71 -0.75 4.91 16 27 C -0.11 -3.22 1.07 -52.31 -0.06 -3.28 16 28 C -0.11 -3.04 6.78 30.89 0.21 -2.83 16 29 C -0.13 -3.61 8.08 31.23 0.25 -3.35 16 30 C -0.12 -3.02 7.84 30.89 0.24 -2.78 16 31 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.38 19.13 5.92 -92.71 -0.55 18.58 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.41 7.79 6.05 -92.71 -0.56 7.23 16 36 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 39 H 0.10 2.04 6.99 -2.39 -0.02 2.03 16 40 H 0.05 1.78 6.42 -2.39 -0.02 1.77 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -68.80 376.01 0.30 -68.50 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: -0.79 Total: 38.52 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 5.32 Total: -13.50 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -4.86 Total: -122.71 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.07 Total: -19.28 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.31 Total: 0.75 kcal Total: -68.80 0.30 -68.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078692445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.152 kcal (2) G-P(sol) polarization free energy of solvation -68.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds