Wall clock time and date at job start Wed Apr 1 2020 02:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48501 * 109.47078 * 239.99958 * 3 2 1 5 5 H 1.48497 * 109.46945 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46824 * 119.99769 * 3 2 1 7 7 C 1.38814 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00078 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.46492 * 119.99826 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.95638 * 336.40672 * 10 9 7 12 12 C 1.53957 * 113.65902 * 107.81807 * 10 9 7 13 13 C 1.53948 * 87.29686 * 89.73656 * 12 10 9 14 14 H 1.08998 * 113.74464 * 270.24877 * 13 12 10 15 15 N 1.46497 * 113.66788 * 139.20409 * 13 12 10 16 16 C 1.34780 * 120.00137 * 107.80527 * 15 13 12 17 17 O 1.21722 * 119.99687 * 0.02562 * 16 15 13 18 18 C 1.46494 * 119.99817 * 180.02562 * 16 15 13 19 19 C 1.36117 * 125.70836 * 180.02562 * 18 16 15 20 20 C 1.42224 * 107.62291 * 179.97438 * 19 18 16 21 21 C 1.45592 * 140.77655 * 180.02562 * 20 19 18 22 22 C 1.31812 * 114.63395 * 179.97438 * 21 20 19 23 23 S 1.75359 * 111.24385 * 0.03811 * 22 21 20 24 24 C 1.38171 * 106.99863 * 359.97438 * 20 19 18 25 25 N 1.37463 * 108.16757 * 359.76196 * 24 20 19 26 26 H 0.97001 * 125.68336 * 180.28608 * 25 24 20 27 27 C 1.52909 * 86.78501 * 24.73264 * 13 12 10 28 28 C 1.52910 * 121.13680 * 100.81909 * 27 13 12 29 29 C 1.53949 * 86.78077 * 100.82535 * 28 27 13 30 30 C 1.52905 * 121.13655 * 209.38636 * 27 13 12 31 31 H 0.97009 * 120.00173 * 0.02562 * 1 2 3 32 32 H 0.97003 * 119.99527 * 0.02562 * 9 7 2 33 33 H 1.09001 * 113.57949 * 204.33552 * 12 10 9 34 34 H 1.08996 * 113.58143 * 335.13213 * 12 10 9 35 35 H 0.96999 * 119.99978 * 287.81717 * 15 13 12 36 36 H 1.08003 * 126.18879 * 359.97438 * 19 18 16 37 37 H 1.08004 * 122.68408 * 359.97438 * 21 20 19 38 38 H 1.08002 * 124.38043 * 180.02562 * 22 21 20 39 39 H 1.09006 * 113.66074 * 215.29190 * 28 27 13 40 40 H 1.08994 * 113.66448 * 346.35155 * 28 27 13 41 41 H 1.09009 * 113.57633 * 270.12923 * 29 28 27 42 42 H 1.09000 * 113.65567 * 139.34741 * 29 28 27 43 43 H 1.08990 * 113.66878 * 13.64950 * 30 27 13 44 44 H 1.09000 * 113.66430 * 144.61574 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0668 -3.5649 -0.4041 12 6 1.9943 -4.4082 1.3406 13 6 0.7251 -5.0994 0.8101 14 1 -0.1953 -4.5621 1.0385 15 7 0.6498 -6.5246 1.1406 16 6 -0.2277 -6.9558 2.0683 17 8 -0.9580 -6.1611 2.6311 18 6 -0.3026 -8.3810 2.3992 19 6 -1.1419 -8.9415 3.3126 20 6 -0.8923 -10.3416 3.3243 21 6 -1.3416 -11.5618 3.9792 22 6 -0.7261 -12.6575 3.5814 23 16 0.4763 -12.3014 2.3556 24 6 0.1067 -10.5816 2.4005 25 7 0.4618 -9.3816 1.8317 26 1 1.1380 -9.2580 1.1473 27 6 1.2651 -4.8227 -0.5935 28 6 1.9573 -5.9187 -1.4046 29 6 0.6286 -6.0732 -2.1667 30 6 0.3201 -4.6159 -1.7776 31 1 -0.4851 0.8401 -0.0004 32 1 0.3554 -2.3881 -0.0005 33 1 2.8292 -5.0910 1.4981 34 1 1.8115 -3.7580 2.1960 35 1 1.2317 -7.1579 0.6920 36 1 -1.8663 -8.4177 3.9187 37 1 -2.1172 -11.5688 4.7307 38 1 -0.9350 -13.6466 3.9615 39 1 2.7767 -5.5533 -2.0237 40 1 2.2278 -6.7945 -0.8150 41 1 -0.0504 -6.7976 -1.7169 42 1 0.7543 -6.2208 -3.2393 43 1 -0.7171 -4.4511 -1.4861 44 1 0.6786 -3.8833 -2.5007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078692446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:14 Heat of formation + Delta-G solvation = 74.799636 kcal Electronic energy + Delta-G solvation = -27246.645695 eV Core-core repulsion = 23485.273726 eV Total energy + Delta-G solvation = -3761.371969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.50836 -41.78620 -39.84316 -36.59563 -36.34008 -35.62482 -34.15872 -31.64214 -31.56673 -29.57413 -26.81405 -26.49616 -25.48904 -25.07094 -24.03035 -23.12909 -21.52426 -21.31093 -20.83141 -20.17405 -19.46476 -18.86018 -17.75890 -17.36476 -16.85629 -16.54522 -16.19687 -16.07408 -15.84562 -15.60481 -15.42165 -15.25704 -14.94129 -14.56743 -14.32573 -13.97978 -13.77906 -13.41222 -13.33958 -13.19588 -12.98636 -12.80434 -12.78011 -12.62294 -12.59260 -12.22846 -12.02144 -11.80813 -11.75818 -11.49340 -11.41211 -11.11584 -10.94886 -10.69001 -10.57206 -10.08332 -9.29357 -9.00234 -8.64287 -7.95054 -5.24217 0.07665 0.16202 0.42426 1.06917 1.46181 1.49460 1.55409 1.79994 1.88608 2.10763 2.28167 2.54391 3.34980 3.36676 3.45422 3.57229 3.73999 3.81560 3.86774 3.99603 4.01231 4.17448 4.20666 4.40568 4.52624 4.58315 4.63052 4.70247 4.76640 4.81004 4.92399 4.96971 5.03017 5.09141 5.13016 5.18816 5.19622 5.22824 5.31607 5.42361 5.50345 5.53254 5.62266 5.67682 6.13003 6.26344 6.41445 7.01171 7.31856 8.08427 8.30325 9.27986 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022677 B = 0.002261 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.445501 B =12383.323524 C =12988.727031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.715 5.715 10 C 0.168 3.832 11 H 0.076 0.924 12 C -0.172 4.172 13 C 0.161 3.839 14 H 0.076 0.924 15 N -0.693 5.693 16 C 0.584 3.416 17 O -0.570 6.570 18 C -0.015 4.015 19 C -0.085 4.085 20 C -0.183 4.183 21 C -0.089 4.089 22 C -0.212 4.212 23 S 0.166 5.834 24 C -0.018 4.018 25 N -0.512 5.512 26 H 0.433 0.567 27 C -0.118 4.118 28 C -0.093 4.093 29 C -0.124 4.124 30 C -0.127 4.127 31 H 0.250 0.750 32 H 0.372 0.628 33 H 0.104 0.896 34 H 0.039 0.961 35 H 0.410 0.590 36 H 0.150 0.850 37 H 0.161 0.839 38 H 0.202 0.798 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.646 -31.303 1.256 31.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.206 1.206 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.352 5.352 10 C 0.057 3.943 11 H 0.094 0.906 12 C -0.214 4.214 13 C 0.056 3.944 14 H 0.094 0.906 15 N -0.344 5.344 16 C 0.372 3.628 17 O -0.449 6.449 18 C -0.129 4.129 19 C -0.113 4.113 20 C -0.196 4.196 21 C -0.119 4.119 22 C -0.346 4.346 23 S 0.419 5.581 24 C -0.247 4.247 25 N -0.117 5.117 26 H 0.274 0.726 27 C -0.120 4.120 28 C -0.130 4.130 29 C -0.162 4.162 30 C -0.165 4.165 31 H 0.059 0.941 32 H 0.204 0.796 33 H 0.122 0.878 34 H 0.058 0.942 35 H 0.248 0.752 36 H 0.168 0.832 37 H 0.178 0.822 38 H 0.219 0.781 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.363 -31.357 0.720 31.668 hybrid contribution -0.936 2.437 0.624 2.684 sum 3.427 -28.921 1.344 29.154 Atomic orbital electron populations 1.69832 1.06742 1.26087 1.59374 1.25594 0.96317 1.01231 1.03753 0.85202 0.77128 0.79129 0.78225 1.20012 1.22536 1.20562 1.19641 0.91560 0.84973 1.41128 0.90162 1.42233 1.05252 1.00498 1.87201 1.21066 0.95210 0.84293 0.93710 0.90634 1.24205 0.97643 0.99568 0.99943 1.21877 0.97868 0.79891 0.94742 0.90634 1.45696 1.39053 1.09290 1.40376 1.17303 0.80015 0.85977 0.79488 1.90888 1.44506 1.55844 1.53681 1.19697 1.01727 0.87435 1.04004 1.20911 0.99703 0.91953 0.98759 1.19697 1.02217 0.94456 1.03225 1.20542 1.01626 0.88685 1.01034 1.25325 1.02073 1.03670 1.03498 1.83884 1.41576 0.89354 1.43240 1.24017 1.03923 0.94179 1.02616 1.41228 1.33457 1.02642 1.34409 0.72571 1.23416 0.98322 0.97865 0.92391 1.22546 0.97125 0.96337 0.97039 1.22800 0.97186 0.95070 1.01113 1.22569 0.98074 0.98254 0.97610 0.94122 0.79641 0.87797 0.94214 0.75219 0.83228 0.82167 0.78130 0.88267 0.89292 0.90091 0.89924 0.94049 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 3 Si 0.97 46.61 29.55 68.60 2.03 48.63 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 7 C -0.24 -13.36 9.97 84.03 0.84 -12.52 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 9 N -0.72 -36.05 5.09 -321.55 -1.64 -37.69 16 10 C 0.17 6.38 4.36 45.29 0.20 6.58 16 11 H 0.08 2.74 8.10 -2.39 -0.02 2.72 16 12 C -0.17 -5.91 7.68 31.23 0.24 -5.67 16 13 C 0.16 5.28 4.03 45.28 0.18 5.46 16 14 H 0.08 3.21 7.46 -2.39 -0.02 3.19 16 15 N -0.69 -17.26 5.27 -445.29 -2.35 -19.61 16 16 C 0.58 17.52 7.78 86.39 0.67 18.19 16 17 O -0.57 -22.99 16.45 -4.42 -0.07 -23.06 16 18 C -0.02 -0.37 6.97 39.81 0.28 -0.09 16 19 C -0.08 -2.11 10.58 22.77 0.24 -1.86 16 20 C -0.18 -3.79 6.80 -20.41 -0.14 -3.93 16 21 C -0.09 -1.31 10.42 23.39 0.24 -1.06 16 22 C -0.21 -2.24 11.03 67.04 0.74 -1.50 16 23 S 0.17 1.94 23.24 -56.49 -1.31 0.62 16 24 C -0.02 -0.32 8.41 83.79 0.70 0.38 16 25 N -0.51 -8.69 6.08 -179.04 -1.09 -9.78 16 26 H 0.43 4.37 8.14 -92.71 -0.75 3.61 16 27 C -0.12 -3.48 0.92 -52.31 -0.05 -3.53 16 28 C -0.09 -1.81 7.47 30.88 0.23 -1.57 16 29 C -0.12 -2.60 8.08 31.23 0.25 -2.35 16 30 C -0.13 -3.97 7.49 30.88 0.23 -3.74 16 31 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16 32 H 0.37 20.72 7.81 -92.71 -0.72 20.00 16 33 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 35 H 0.41 6.77 5.79 -92.71 -0.54 6.23 16 36 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 37 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.20 0.79 8.06 -2.91 -0.02 0.76 16 39 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.09 1.15 6.42 -2.39 -0.02 1.13 16 41 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 44 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -75.62 378.61 0.23 -75.38 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -0.95 Total: 37.11 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 5.33 Total: -11.20 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -4.79 Total: -127.48 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.07 Total: -23.06 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.31 Total: 0.62 kcal Total: -75.62 0.23 -75.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078692446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.182 kcal (2) G-P(sol) polarization free energy of solvation -75.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds