Wall clock time and date at job start Wed Apr 1 2020 03:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00165 * 2 1 4 4 H 1.09003 * 110.63621 * 26.85627 * 3 2 1 5 5 C 1.54324 * 110.87177 * 263.61608 * 3 2 1 6 6 N 1.47025 * 107.26647 * 219.37269 * 5 3 2 7 7 C 1.36939 * 125.64590 * 178.99596 * 6 5 3 8 8 H 1.08002 * 120.00021 * 179.97438 * 7 6 5 9 9 C 1.38815 * 119.99913 * 359.97219 * 7 6 5 10 10 N 1.31614 * 120.00213 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99629 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47603 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47228 * 120.00130 * 11 9 7 14 14 H 1.48508 * 109.46996 * 239.99468 * 11 9 7 15 15 C 1.47461 * 108.72497 * 358.96721 * 6 5 3 16 16 C 1.54915 * 104.81211 * 24.07584 * 15 6 5 17 17 H 1.09004 * 111.00182 * 81.13182 * 16 15 6 18 18 N 1.46499 * 111.00683 * 204.94837 * 16 15 6 19 19 C 1.34777 * 119.99665 * 270.69541 * 18 16 15 20 20 O 1.21603 * 120.00257 * 359.72088 * 19 18 16 21 21 C 1.47402 * 119.99679 * 179.72400 * 19 18 16 22 22 C 1.47104 * 128.56454 * 89.67442 * 21 19 18 23 23 C 1.50700 * 127.33558 * 359.97438 * 22 21 19 24 24 N 1.30014 * 105.32906 * 179.86793 * 22 21 19 25 25 O 1.20657 * 112.29928 * 0.42638 * 24 22 21 26 26 C 1.33492 * 113.15989 * 359.70569 * 25 24 22 27 27 C 1.50697 * 126.83246 * 180.02562 * 26 25 24 28 28 F 1.39899 * 109.46961 * 119.98098 * 27 26 25 29 29 F 1.39894 * 109.47745 * 239.98260 * 27 26 25 30 30 H 1.08998 * 109.47086 * 299.99626 * 1 2 3 31 31 H 1.08992 * 109.47231 * 60.00012 * 1 2 3 32 32 H 1.08999 * 109.46750 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.88271 * 338.78378 * 5 3 2 34 34 H 1.08998 * 109.88821 * 99.95154 * 5 3 2 35 35 H 0.97000 * 120.00231 * 180.02562 * 10 9 7 36 36 H 1.08999 * 110.35140 * 265.26032 * 15 6 5 37 37 H 1.09004 * 110.40711 * 142.92001 * 15 6 5 38 38 H 0.97001 * 119.99790 * 90.41254 * 18 16 15 39 39 H 1.09004 * 109.47176 * 89.99918 * 23 22 21 40 40 H 1.09001 * 109.47586 * 210.00467 * 23 22 21 41 41 H 1.09000 * 109.47046 * 330.00177 * 23 22 21 42 42 H 1.09007 * 109.46957 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3804 1.7425 -1.4330 6 7 3.6669 2.4500 -1.3550 7 6 4.3514 2.9808 -2.4156 8 1 5.2930 3.4843 -2.2531 9 6 3.8352 2.8715 -3.6995 10 7 2.6881 2.2574 -3.8976 11 14 4.7694 3.5949 -5.1464 12 1 6.0220 4.2273 -4.6606 13 1 5.1010 2.5156 -6.1110 14 1 3.9274 4.6173 -5.8180 15 6 4.0980 2.4943 0.0545 16 6 3.3816 1.2958 0.7256 17 1 3.9169 0.3652 0.5369 18 7 3.2164 1.5210 2.1637 19 6 4.1796 1.1307 3.0219 20 8 5.1834 0.5871 2.6030 21 6 4.0160 1.3628 4.4684 22 6 3.3980 0.4848 5.4739 23 6 2.7821 -0.8719 5.2478 24 7 3.4982 1.1276 6.5996 25 8 4.0361 2.1996 6.4683 26 6 4.3979 2.4548 5.2089 27 6 5.0882 3.6943 4.7008 28 9 6.3143 3.3428 4.1263 29 9 4.2837 4.3153 3.7394 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.4775 0.8665 -2.0744 34 1 1.6137 2.4097 -1.8269 35 1 2.3275 2.1808 -4.7948 36 1 3.7855 3.4304 0.5173 37 1 5.1795 2.3777 0.1251 38 1 2.4157 1.9547 2.4979 39 1 3.5447 -1.6415 5.3669 40 1 1.9851 -1.0347 5.9734 41 1 2.3710 -0.9208 4.2395 42 1 5.2588 4.3809 5.5300 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081840419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:09 Heat of formation + Delta-G solvation = -77.192667 kcal Electronic energy + Delta-G solvation = -31560.391971 eV Core-core repulsion = 26795.446720 eV Total energy + Delta-G solvation = -4764.945251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.44547 -47.45168 -45.38162 -39.82399 -38.19714 -35.96757 -35.02201 -34.16808 -33.31212 -31.75439 -29.27437 -28.87181 -27.72585 -26.94518 -26.16237 -24.95219 -23.86801 -21.50841 -20.83848 -20.61031 -20.05667 -18.69573 -18.46382 -17.80452 -17.56672 -17.33025 -16.93809 -16.57026 -15.83757 -15.62444 -14.95241 -14.66308 -14.44563 -14.28439 -14.19999 -14.01031 -13.80922 -13.76706 -13.72387 -13.49203 -13.25453 -13.02339 -12.82593 -12.33955 -11.94020 -11.91375 -11.73062 -11.57146 -11.28365 -11.03947 -10.84042 -10.81377 -10.46970 -10.35287 -10.15765 -10.06662 -9.99764 -9.80973 -9.22857 -8.86770 -8.62567 -6.90526 -5.74509 -3.09434 0.58233 1.44302 1.86200 2.28675 2.97620 3.40270 3.42283 3.46250 3.48658 3.58261 3.68972 4.06323 4.09508 4.23800 4.41189 4.49845 4.67058 4.71155 5.04657 5.11336 5.14127 5.25628 5.32374 5.46579 5.52605 5.59175 5.65068 5.66725 5.78674 5.87004 5.98244 6.08404 6.39534 6.59616 6.76119 7.20409 7.41450 7.47424 7.64191 7.68991 7.82666 8.07915 8.19249 9.16414 9.76318 10.38837 11.37075 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.003495 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.801180 B = 8008.928816 C = 9471.682439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.064 0.936 5 C 0.166 3.834 6 N -0.600 5.600 7 C -0.228 4.228 8 H 0.082 0.918 9 C -0.007 4.007 10 N -0.922 5.922 11 Si 0.914 3.086 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.291 1.291 15 C 0.131 3.869 16 C 0.131 3.869 17 H 0.109 0.891 18 N -0.698 5.698 19 C 0.589 3.411 20 O -0.507 6.507 21 C -0.182 4.182 22 C 0.056 3.944 23 C -0.080 4.080 24 N -0.338 5.338 25 O 0.123 5.877 26 C -0.082 4.082 27 C 0.361 3.639 28 F -0.172 7.172 29 F -0.174 7.174 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.253 0.747 36 H 0.026 0.974 37 H 0.052 0.948 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.430 -0.456 20.936 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.082 0.918 5 C 0.040 3.960 6 N -0.328 5.328 7 C -0.356 4.356 8 H 0.100 0.900 9 C -0.203 4.203 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.218 1.218 15 C 0.003 3.997 16 C 0.027 3.973 17 H 0.127 0.873 18 N -0.348 5.348 19 C 0.371 3.629 20 O -0.382 6.382 21 C -0.189 4.189 22 C -0.106 4.106 23 C -0.138 4.138 24 N -0.040 5.040 25 O 0.056 5.944 26 C -0.147 4.147 27 C 0.305 3.695 28 F -0.153 7.153 29 F -0.155 7.155 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.233 0.767 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.969 -1.286 21.578 21.819 hybrid contribution -0.090 0.746 -1.449 1.632 sum -3.059 -0.540 20.129 20.368 Atomic orbital electron populations 1.22715 0.81661 1.02099 0.99796 1.87905 1.19131 1.27496 1.95046 1.23850 0.92701 0.84136 0.99569 0.91815 1.21560 0.88331 0.97281 0.88796 1.44266 1.21454 1.66343 1.00689 1.19136 1.02441 1.29296 0.84695 0.90023 1.24809 0.97421 1.00665 0.97385 1.69938 1.19300 1.47244 1.20513 0.86006 0.78835 0.78221 0.82478 1.20395 1.21670 1.21752 1.21836 0.97869 0.93701 0.86264 1.22536 0.96913 1.01429 0.76443 0.87318 1.45876 1.21106 1.60388 1.07383 1.16788 0.83817 0.79408 0.82896 1.90891 1.28229 1.41403 1.77672 1.22352 1.04663 0.94950 0.96971 1.24882 0.99805 0.99419 0.86462 1.20311 1.00959 0.88245 1.04251 1.73611 1.13630 0.94259 1.22547 1.84545 1.55560 1.28441 1.25901 1.25016 1.04541 0.99049 0.86079 1.19222 0.74948 0.87349 0.87944 1.93157 1.42625 1.93004 1.86482 1.93137 1.73716 1.82172 1.66452 0.94868 0.93559 0.90181 0.91843 0.93222 0.93710 0.95617 0.92987 0.76683 0.89123 0.89543 0.89173 0.83802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.55 16 2 O -0.38 -6.64 10.44 -35.23 -0.37 -7.01 16 3 C 0.06 1.04 3.08 -24.90 -0.08 0.96 16 4 H 0.06 1.03 7.68 -51.93 -0.40 0.63 16 5 C 0.17 3.95 5.15 -3.06 -0.02 3.94 16 6 N -0.60 -15.29 3.40 -170.03 -0.58 -15.87 16 7 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 9 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 10 N -0.92 -26.73 10.31 55.49 0.57 -26.16 16 11 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 C 0.13 2.78 6.93 -2.51 -0.02 2.77 16 16 C 0.13 2.42 3.09 -65.78 -0.20 2.22 16 17 H 0.11 2.26 7.64 -51.93 -0.40 1.86 16 18 N -0.70 -10.27 5.21 -52.81 -0.28 -10.54 16 19 C 0.59 9.16 7.63 -12.53 -0.10 9.06 16 20 O -0.51 -9.93 16.80 5.27 0.09 -9.84 16 21 C -0.18 -2.31 6.24 -102.89 -0.64 -2.95 16 22 C 0.06 0.62 7.59 -79.77 -0.61 0.02 16 23 C -0.08 -0.68 10.49 36.01 0.38 -0.30 16 24 N -0.34 -3.80 12.01 34.78 0.42 -3.38 16 25 O 0.12 1.24 11.06 18.65 0.21 1.45 16 26 C -0.08 -0.88 6.98 -34.63 -0.24 -1.12 16 27 C 0.36 3.29 5.67 36.00 0.20 3.49 16 28 F -0.17 -2.12 17.32 2.25 0.04 -2.08 16 29 F -0.17 -1.93 17.32 2.25 0.04 -1.89 16 30 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.72 7.30 -51.93 -0.38 1.34 16 34 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.40 4.80 8.52 -40.82 -0.35 4.45 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.14 0.57 8.14 -51.92 -0.42 0.14 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -34.07 372.25 -5.00 -39.07 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.26 Total: 0.74 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: -0.47 Total: 12.85 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.14 Total: -55.95 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.07 Total: -15.40 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.08 Total: -3.97 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.07 -5.00 -39.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081840419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.120 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds