Wall clock time and date at job start Wed Apr 1 2020 03:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00165 * 2 1 4 4 H 1.09003 * 110.63621 * 26.85627 * 3 2 1 5 5 C 1.54324 * 110.87177 * 263.61608 * 3 2 1 6 6 N 1.47025 * 107.26647 * 219.37269 * 5 3 2 7 7 C 1.36939 * 125.64590 * 178.99596 * 6 5 3 8 8 H 1.08002 * 120.00021 * 179.97438 * 7 6 5 9 9 C 1.38815 * 119.99913 * 359.97219 * 7 6 5 10 10 N 1.31614 * 120.00213 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99629 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47603 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47228 * 120.00130 * 11 9 7 14 14 H 1.48508 * 109.46996 * 239.99468 * 11 9 7 15 15 C 1.47461 * 108.72497 * 358.96721 * 6 5 3 16 16 C 1.54915 * 104.81211 * 24.07584 * 15 6 5 17 17 H 1.09004 * 111.00182 * 81.13182 * 16 15 6 18 18 N 1.46499 * 111.00683 * 204.94837 * 16 15 6 19 19 C 1.34777 * 119.99665 * 270.69541 * 18 16 15 20 20 O 1.21603 * 120.00257 * 359.72088 * 19 18 16 21 21 C 1.47402 * 119.99679 * 179.72400 * 19 18 16 22 22 C 1.47104 * 128.56454 * 89.67442 * 21 19 18 23 23 C 1.50700 * 127.33558 * 359.97438 * 22 21 19 24 24 N 1.30014 * 105.32906 * 179.86793 * 22 21 19 25 25 O 1.20657 * 112.29928 * 0.42638 * 24 22 21 26 26 C 1.33492 * 113.15989 * 359.70569 * 25 24 22 27 27 C 1.50697 * 126.83246 * 180.02562 * 26 25 24 28 28 F 1.39899 * 109.46961 * 119.98098 * 27 26 25 29 29 F 1.39894 * 109.47745 * 239.98260 * 27 26 25 30 30 H 1.08998 * 109.47086 * 299.99626 * 1 2 3 31 31 H 1.08992 * 109.47231 * 60.00012 * 1 2 3 32 32 H 1.08999 * 109.46750 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.88271 * 338.78378 * 5 3 2 34 34 H 1.08998 * 109.88821 * 99.95154 * 5 3 2 35 35 H 0.97000 * 120.00231 * 180.02562 * 10 9 7 36 36 H 1.08999 * 110.35140 * 265.26032 * 15 6 5 37 37 H 1.09004 * 110.40711 * 142.92001 * 15 6 5 38 38 H 0.97001 * 119.99790 * 90.41254 * 18 16 15 39 39 H 1.09004 * 109.47176 * 89.99918 * 23 22 21 40 40 H 1.09001 * 109.47586 * 210.00467 * 23 22 21 41 41 H 1.09000 * 109.47046 * 330.00177 * 23 22 21 42 42 H 1.09007 * 109.46957 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3804 1.7425 -1.4330 6 7 3.6669 2.4500 -1.3550 7 6 4.3514 2.9808 -2.4156 8 1 5.2930 3.4843 -2.2531 9 6 3.8352 2.8715 -3.6995 10 7 2.6881 2.2574 -3.8976 11 14 4.7694 3.5949 -5.1464 12 1 6.0220 4.2273 -4.6606 13 1 5.1010 2.5156 -6.1110 14 1 3.9274 4.6173 -5.8180 15 6 4.0980 2.4943 0.0545 16 6 3.3816 1.2958 0.7256 17 1 3.9169 0.3652 0.5369 18 7 3.2164 1.5210 2.1637 19 6 4.1796 1.1307 3.0219 20 8 5.1834 0.5871 2.6030 21 6 4.0160 1.3628 4.4684 22 6 3.3980 0.4848 5.4739 23 6 2.7821 -0.8719 5.2478 24 7 3.4982 1.1276 6.5996 25 8 4.0361 2.1996 6.4683 26 6 4.3979 2.4548 5.2089 27 6 5.0882 3.6943 4.7008 28 9 6.3143 3.3428 4.1263 29 9 4.2837 4.3153 3.7394 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.4775 0.8665 -2.0744 34 1 1.6137 2.4097 -1.8269 35 1 2.3275 2.1808 -4.7948 36 1 3.7855 3.4304 0.5173 37 1 5.1795 2.3777 0.1251 38 1 2.4157 1.9547 2.4979 39 1 3.5447 -1.6415 5.3669 40 1 1.9851 -1.0347 5.9734 41 1 2.3710 -0.9208 4.2395 42 1 5.2588 4.3809 5.5300 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081840419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:07 Heat of formation + Delta-G solvation = -101.872118 kcal Electronic energy + Delta-G solvation = -31561.462152 eV Core-core repulsion = 26795.446720 eV Total energy + Delta-G solvation = -4766.015432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.133 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.25408 -48.28220 -46.24239 -41.21193 -39.68795 -37.53412 -35.92010 -35.71520 -34.26943 -33.60660 -30.67865 -29.95120 -29.14011 -28.05849 -27.52012 -26.37793 -25.28134 -22.67263 -22.23275 -22.02073 -21.48604 -19.77147 -19.32176 -19.02470 -18.52475 -18.39574 -18.14653 -17.98695 -17.26270 -16.91625 -16.54586 -16.04879 -15.83360 -15.65031 -15.33933 -15.13042 -15.05754 -14.69288 -14.61456 -14.52521 -14.37960 -14.30248 -14.08605 -13.72806 -13.63708 -13.26954 -13.00552 -12.78929 -12.72344 -12.62158 -12.43650 -12.34051 -12.03911 -11.88465 -11.70381 -11.61431 -11.15980 -11.12745 -10.78682 -10.67179 -10.27203 -8.97757 -7.87792 -5.25825 -0.29378 0.57713 0.98751 1.10659 1.46622 1.47984 1.58352 1.77439 2.45792 2.68240 2.72875 2.82547 2.93191 3.22416 3.32365 3.40977 3.47586 3.64141 3.66930 3.82483 3.87685 3.95277 4.05878 4.28082 4.33382 4.40599 4.52361 4.58015 4.62924 4.65266 4.79727 4.86388 4.88573 5.01267 5.21783 5.34676 5.40975 5.65451 6.12758 6.20874 6.28928 6.80720 6.87213 7.04861 7.68926 8.31029 9.21881 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.003495 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.801180 B = 8008.928816 C = 9471.682439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.079 3.921 4 H 0.097 0.903 5 C 0.175 3.825 6 N -0.620 5.620 7 C -0.247 4.247 8 H 0.082 0.918 9 C -0.059 4.059 10 N -0.948 5.948 11 Si 0.980 3.020 12 H -0.267 1.267 13 H -0.292 1.292 14 H -0.287 1.287 15 C 0.132 3.868 16 C 0.150 3.850 17 H 0.083 0.917 18 N -0.682 5.682 19 C 0.597 3.403 20 O -0.553 6.553 21 C -0.213 4.213 22 C 0.060 3.940 23 C -0.082 4.082 24 N -0.347 5.347 25 O 0.137 5.863 26 C -0.062 4.062 27 C 0.352 3.648 28 F -0.193 7.193 29 F -0.186 7.186 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.102 0.898 33 H 0.020 0.980 34 H 0.024 0.976 35 H 0.249 0.751 36 H 0.042 0.958 37 H 0.035 0.965 38 H 0.416 0.584 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 0.320 23.217 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C 0.019 3.981 4 H 0.115 0.885 5 C 0.049 3.951 6 N -0.348 5.348 7 C -0.376 4.376 8 H 0.100 0.900 9 C -0.252 4.252 10 N -0.596 5.596 11 Si 0.808 3.192 12 H -0.192 1.192 13 H -0.219 1.219 14 H -0.214 1.214 15 C 0.005 3.995 16 C 0.044 3.956 17 H 0.101 0.899 18 N -0.333 5.333 19 C 0.381 3.619 20 O -0.431 6.431 21 C -0.221 4.221 22 C -0.101 4.101 23 C -0.140 4.140 24 N -0.049 5.049 25 O 0.071 5.929 26 C -0.128 4.128 27 C 0.298 3.702 28 F -0.174 7.174 29 F -0.167 7.167 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.121 0.879 33 H 0.038 0.962 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.254 0.746 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.733 -0.498 23.917 24.211 hybrid contribution 0.117 0.482 -2.102 2.160 sum -3.616 -0.016 21.814 22.112 Atomic orbital electron populations 1.23005 0.79209 1.04019 1.00779 1.87892 1.21816 1.26688 1.94915 1.23463 0.93273 0.85459 0.95877 0.88538 1.21296 0.87170 0.94804 0.91797 1.44515 1.22105 1.66275 1.01920 1.19479 1.02790 1.29398 0.85885 0.89979 1.25637 0.98408 1.01349 0.99849 1.70150 1.20571 1.48249 1.20628 0.84993 0.77990 0.77276 0.78948 1.19157 1.21931 1.21410 1.21902 0.97249 0.95541 0.84760 1.21967 0.96299 0.98854 0.78447 0.89919 1.45596 1.21821 1.60264 1.05633 1.17053 0.82785 0.78020 0.84038 1.90870 1.30036 1.43353 1.78807 1.22073 1.07546 0.96956 0.95497 1.25199 0.99211 0.99991 0.85749 1.20451 1.01612 0.87016 1.04881 1.73606 1.14243 0.94621 1.22478 1.84556 1.55013 1.28083 1.25287 1.25302 1.02775 0.98836 0.85861 1.20023 0.73604 0.87660 0.88916 1.93115 1.43995 1.93278 1.87020 1.93108 1.74058 1.82210 1.67278 0.91736 0.94618 0.87943 0.96152 0.95762 0.94177 0.94057 0.94631 0.74625 0.88635 0.87471 0.89213 0.77763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.85 113.37 1.23 1.86 16 2 O -0.39 -13.57 10.44 -148.98 -1.56 -15.13 16 3 C 0.08 2.85 3.08 31.78 0.10 2.94 16 4 H 0.10 2.88 7.68 -2.39 -0.02 2.86 16 5 C 0.18 8.63 5.15 86.73 0.45 9.08 16 6 N -0.62 -32.56 3.40 -691.86 -2.35 -34.91 16 7 C -0.25 -14.12 10.28 84.03 0.86 -13.26 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 9 C -0.06 -3.38 5.49 84.86 0.47 -2.91 16 10 N -0.95 -56.69 10.31 21.65 0.22 -56.47 16 11 Si 0.98 46.11 29.55 68.60 2.03 48.13 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 13 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 14 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 15 C 0.13 5.71 6.93 86.85 0.60 6.31 16 16 C 0.15 5.55 3.09 46.38 0.14 5.69 16 17 H 0.08 3.55 7.64 -2.39 -0.02 3.53 16 18 N -0.68 -19.32 5.21 -439.24 -2.29 -21.61 16 19 C 0.60 18.21 7.63 86.66 0.66 18.87 16 20 O -0.55 -21.99 16.80 -4.04 -0.07 -22.06 16 21 C -0.21 -5.07 6.24 -18.74 -0.12 -5.19 16 22 C 0.06 1.21 7.59 45.16 0.34 1.55 16 23 C -0.08 -1.22 10.49 71.24 0.75 -0.48 16 24 N -0.35 -6.93 12.01 -44.79 -0.54 -7.47 16 25 O 0.14 2.39 11.06 77.00 0.85 3.24 16 26 C -0.06 -1.18 6.98 25.48 0.18 -1.00 16 27 C 0.35 5.51 5.67 71.23 0.40 5.92 16 28 F -0.19 -4.53 17.32 44.97 0.78 -3.75 16 29 F -0.19 -3.71 17.32 44.97 0.78 -2.93 16 30 H 0.06 1.21 8.11 -2.39 -0.02 1.19 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.02 1.16 7.30 -2.39 -0.02 1.14 16 34 H 0.02 1.30 7.50 -2.39 -0.02 1.28 16 35 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.42 9.02 8.52 -92.71 -0.79 8.23 16 39 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.21 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -77.55 372.25 4.22 -73.33 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.29 Total: 10.22 kcal Atomic # 6 Polarization: 23.33 SS G_CDS: 6.07 Total: 29.39 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -4.95 Total: -120.46 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.77 Total: -33.94 kcal Atomic # 9 Polarization: -8.23 SS G_CDS: 1.56 Total: -6.68 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -77.55 4.22 -73.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081840419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.538 kcal (2) G-P(sol) polarization free energy of solvation -77.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds