Wall clock time and date at job start Wed Apr 1 2020 03:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28059 * 124.23978 * 2 1 4 4 C 1.34413 * 117.91578 * 180.02562 * 3 2 1 5 5 C 1.41246 * 129.48372 * 179.97438 * 4 3 2 6 6 C 1.35754 * 120.63671 * 180.02562 * 5 4 3 7 7 C 1.40192 * 120.61377 * 0.04736 * 6 5 4 8 8 C 1.47587 * 120.12221 * 179.97438 * 7 6 5 9 9 O 1.21591 * 119.99915 * 180.02562 * 8 7 6 10 10 N 1.34782 * 120.00181 * 359.97438 * 8 7 6 11 11 C 1.46499 * 119.99847 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46974 * 180.02562 * 11 10 8 13 13 H 1.09002 * 112.84949 * 45.33483 * 12 11 10 14 14 C 1.53781 * 113.61707 * 176.53042 * 12 11 10 15 15 C 1.53777 * 87.08336 * 140.06298 * 14 12 11 16 16 H 1.09008 * 113.61204 * 89.11878 * 15 14 12 17 17 N 1.46492 * 113.61596 * 219.93501 * 15 14 12 18 18 C 1.36939 * 120.00033 * 205.00444 * 17 15 14 19 19 H 1.08000 * 120.00196 * 359.97438 * 18 17 15 20 20 C 1.38822 * 119.99927 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99586 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99982 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46692 * 89.99863 * 22 20 18 24 24 H 1.48497 * 109.47074 * 209.99810 * 22 20 18 25 25 H 1.48497 * 109.46978 * 330.00238 * 22 20 18 26 26 C 1.53775 * 87.07992 * 334.56762 * 15 14 12 27 27 C 1.39177 * 119.74990 * 0.23249 * 7 6 5 28 28 C 1.38917 * 119.84403 * 359.46770 * 27 7 6 29 29 S 1.70647 * 124.24350 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47010 * 269.95382 * 1 2 3 31 31 H 1.09001 * 109.47354 * 29.95529 * 1 2 3 32 32 H 1.08998 * 109.47265 * 149.95939 * 1 2 3 33 33 H 1.08001 * 119.67985 * 0.04955 * 5 4 3 34 34 H 1.07999 * 119.68884 * 180.02562 * 6 5 4 35 35 H 0.96991 * 119.99849 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.46950 * 60.00362 * 11 10 8 37 37 H 1.08992 * 109.47264 * 300.00256 * 11 10 8 38 38 H 1.08997 * 113.61673 * 254.61847 * 14 12 11 39 39 H 1.09009 * 113.61202 * 25.43077 * 14 12 11 40 40 H 0.97005 * 120.00166 * 24.99923 * 17 15 14 41 41 H 0.97004 * 119.99764 * 179.97438 * 21 20 18 42 42 H 1.08993 * 113.61636 * 270.87622 * 26 15 14 43 43 H 1.09008 * 113.61006 * 139.97865 * 26 15 14 44 44 H 1.07996 * 120.07621 * 179.72998 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9106 -0.0005 5 6 4.5762 1.8952 -0.0011 6 6 5.8864 1.5399 -0.0021 7 6 6.2597 0.1886 -0.0036 8 6 7.6874 -0.1854 -0.0052 9 8 8.0087 -1.3581 -0.0070 10 7 8.6351 0.7729 -0.0059 11 6 10.0523 0.4016 -0.0081 12 6 10.9112 1.6677 -0.0078 13 1 10.5654 2.4136 0.7079 14 6 12.4211 1.3879 0.0753 15 6 12.6084 2.5270 -0.9406 16 1 12.7266 3.5079 -0.4800 17 7 13.6288 2.2478 -1.9539 18 6 14.2705 3.2814 -2.5824 19 1 14.0240 4.3025 -2.3314 20 6 15.2379 3.0168 -3.5422 21 7 15.8543 4.0103 -4.1466 22 14 15.6648 1.2507 -3.9759 23 1 14.7926 0.7888 -5.0855 24 1 17.0862 1.1746 -4.3990 25 1 15.4548 0.3847 -2.7880 26 6 11.1738 2.2367 -1.4121 27 6 5.2789 -0.7988 -0.0089 28 6 3.9368 -0.4402 -0.0015 29 16 2.4672 -1.4107 -0.0006 30 1 -0.3633 -0.0008 1.0277 31 1 -0.3634 0.8904 -0.5131 32 1 -0.3634 -0.8896 -0.5144 33 1 4.3055 2.9407 -0.0004 34 1 6.6482 2.3054 -0.0022 35 1 8.3789 1.7084 -0.0049 36 1 10.2723 -0.1869 -0.8988 37 1 10.2747 -0.1882 0.8811 38 1 12.8514 1.6004 1.0539 39 1 12.7053 0.4079 -0.3082 40 1 13.8501 1.3307 -2.1796 41 1 16.5306 3.8254 -4.8170 42 1 11.1171 1.4895 -2.2036 43 1 10.5971 3.1346 -1.6343 44 1 5.5605 -1.8414 -0.0144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086245548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:10 Heat of formation + Delta-G solvation = 52.607979 kcal Electronic energy + Delta-G solvation = -25686.029660 eV Core-core repulsion = 21923.695388 eV Total energy + Delta-G solvation = -3762.334272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.07930 -39.90389 -38.68178 -37.18150 -34.94888 -33.41954 -32.24141 -31.66468 -30.79628 -29.31765 -27.35384 -25.24397 -24.80056 -24.00159 -23.12858 -21.85291 -21.04462 -20.69541 -19.49214 -19.04354 -17.86947 -17.44468 -16.65648 -16.35621 -15.76995 -15.62783 -15.44095 -15.12517 -14.65173 -14.44532 -14.42508 -13.96023 -13.84387 -13.70426 -13.60467 -13.27729 -12.94163 -12.77035 -12.69861 -12.26470 -12.01686 -11.90421 -11.65352 -11.59440 -11.38359 -10.92695 -10.69636 -10.52420 -10.48107 -10.17383 -10.16721 -10.06368 -9.85716 -9.57471 -9.28558 -9.06633 -8.91556 -8.63575 -7.29425 -5.80506 -3.16122 -0.35292 0.64230 0.67521 1.16934 1.50390 2.63265 2.91661 3.29730 3.36100 3.36290 3.39281 3.44204 4.05873 4.31586 4.35836 4.56382 4.57476 4.63426 4.77377 4.81025 4.82852 4.84262 4.98706 5.06531 5.27632 5.29898 5.35306 5.38319 5.52533 5.61932 5.63924 5.68607 5.72244 5.75949 5.81563 6.03802 6.12234 6.14590 6.19145 6.30111 6.46377 6.64335 6.94383 7.06775 7.27340 7.95753 7.96152 8.39253 9.17098 9.89886 10.09499 11.37636 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.024480 B = 0.001678 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.503530 B =16683.214176 C =16902.738282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.096 3.904 3 N -0.473 5.473 4 C 0.107 3.893 5 C -0.070 4.070 6 C -0.075 4.075 7 C -0.118 4.118 8 C 0.558 3.442 9 O -0.537 6.537 10 N -0.717 5.717 11 C 0.131 3.869 12 C -0.128 4.128 13 H 0.092 0.908 14 C -0.145 4.145 15 C 0.172 3.828 16 H 0.084 0.916 17 N -0.737 5.737 18 C -0.249 4.249 19 H 0.091 0.909 20 C 0.005 3.995 21 N -0.932 5.932 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.161 4.161 27 C -0.004 4.004 28 C -0.198 4.198 29 S 0.115 5.885 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.401 0.599 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.363 0.637 41 H 0.260 0.740 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.056 -8.789 12.380 35.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.188 4.188 3 N -0.187 5.187 4 C -0.015 4.015 5 C -0.090 4.090 6 C -0.097 4.097 7 C -0.125 4.125 8 C 0.344 3.656 9 O -0.415 6.415 10 N -0.368 5.368 11 C 0.009 3.991 12 C -0.147 4.147 13 H 0.110 0.890 14 C -0.185 4.185 15 C 0.060 3.940 16 H 0.102 0.898 17 N -0.376 5.376 18 C -0.379 4.379 19 H 0.109 0.891 20 C -0.191 4.191 21 N -0.580 5.580 22 Si 0.714 3.286 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.202 4.202 27 C -0.027 4.027 28 C -0.316 4.316 29 S 0.371 5.629 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.237 0.763 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.196 0.804 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -32.241 -9.944 12.274 35.903 hybrid contribution 0.858 -0.044 -0.452 0.971 sum -31.383 -9.988 11.822 34.991 Atomic orbital electron populations 1.20614 0.84535 1.04839 1.04521 1.26899 1.02041 0.90944 0.98929 1.66171 1.04077 1.31308 1.17161 1.19338 0.89207 0.91686 1.01278 1.20292 0.90116 0.98841 0.99801 1.20847 0.96191 0.95166 0.97469 1.19884 0.93334 0.93674 1.05624 1.18011 0.85021 0.85687 0.76852 1.90804 1.82811 1.18045 1.49839 1.45938 1.06811 1.09521 1.74512 1.21488 0.78019 0.97259 1.02380 1.22653 0.95688 0.96417 0.99951 0.89001 1.23468 0.93214 1.01053 1.00737 1.21500 0.87273 0.96237 0.88952 0.89795 1.42759 1.44539 1.05259 1.45089 1.19140 1.14834 0.88636 1.15319 0.89133 1.24697 0.98701 0.96760 0.98898 1.69703 1.28997 1.29649 1.29626 0.86558 0.77759 0.85954 0.78316 1.21044 1.21681 1.20267 1.23922 1.01170 1.00504 0.94626 1.20422 0.88140 1.00547 0.93549 1.23754 0.98853 0.96844 1.12179 1.84054 0.95183 1.10083 1.73530 0.88888 0.88725 0.89498 0.83954 0.84124 0.76350 0.91023 0.91401 0.91586 0.90298 0.80441 0.93021 0.90402 0.92230 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.44 36.00 0.38 0.08 16 2 C 0.10 0.72 7.29 -13.85 -0.10 0.62 16 3 N -0.47 -4.71 10.56 -8.96 -0.09 -4.80 16 4 C 0.11 1.08 7.00 -84.88 -0.59 0.49 16 5 C -0.07 -0.58 10.03 -39.33 -0.39 -0.98 16 6 C -0.08 -0.59 9.44 -39.74 -0.38 -0.96 16 7 C -0.12 -1.19 5.87 -105.00 -0.62 -1.81 16 8 C 0.56 6.72 7.76 -12.44 -0.10 6.63 16 9 O -0.54 -8.40 16.34 5.29 0.09 -8.31 16 10 N -0.72 -7.33 5.51 -61.33 -0.34 -7.67 16 11 C 0.13 1.54 5.50 -4.04 -0.02 1.51 16 12 C -0.13 -1.50 3.75 -89.81 -0.34 -1.84 16 13 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 14 C -0.14 -2.06 7.39 -25.92 -0.19 -2.26 16 15 C 0.17 3.07 4.48 -67.13 -0.30 2.77 16 16 H 0.08 1.52 8.10 -51.92 -0.42 1.10 16 17 N -0.74 -16.99 5.21 -52.64 -0.27 -17.26 16 18 C -0.25 -6.92 10.45 -15.05 -0.16 -7.08 16 19 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 21 N -0.93 -29.06 13.97 55.49 0.78 -28.29 16 22 Si 0.88 22.01 27.74 -169.99 -4.71 17.29 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 26 C -0.16 -2.41 7.43 -25.92 -0.19 -2.60 16 27 C 0.00 -0.04 9.62 -38.98 -0.37 -0.41 16 28 C -0.20 -1.95 6.54 -38.61 -0.25 -2.20 16 29 S 0.11 0.86 23.11 -107.50 -2.48 -1.63 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.14 0.71 6.38 -52.49 -0.33 0.37 16 35 H 0.40 3.03 6.49 -40.82 -0.26 2.77 16 36 H 0.07 0.95 7.88 -51.93 -0.41 0.55 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.16 8.08 -51.92 -0.42 0.74 16 40 H 0.36 8.27 5.79 -40.82 -0.24 8.04 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.08 1.27 7.92 -51.93 -0.41 0.85 16 43 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 44 H 0.15 1.47 7.64 -52.49 -0.40 1.06 16 LS Contribution 381.35 15.07 5.75 5.75 Total: -1.00 -34.94 381.35 -10.89 -45.83 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.87 Total: 7.07 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -3.73 Total: -7.99 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.07 Total: -58.02 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.48 Total: -1.63 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.94 -10.89 -45.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086245548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.441 kcal (2) G-P(sol) polarization free energy of solvation -34.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds