Wall clock time and date at job start Wed Apr 1 2020 03:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28059 * 124.23978 * 2 1 4 4 C 1.34413 * 117.91578 * 180.02562 * 3 2 1 5 5 C 1.41246 * 129.48372 * 179.97438 * 4 3 2 6 6 C 1.35754 * 120.63671 * 180.02562 * 5 4 3 7 7 C 1.40192 * 120.61377 * 0.04736 * 6 5 4 8 8 C 1.47587 * 120.12221 * 179.97438 * 7 6 5 9 9 O 1.21591 * 119.99915 * 180.02562 * 8 7 6 10 10 N 1.34782 * 120.00181 * 359.97438 * 8 7 6 11 11 C 1.46499 * 119.99847 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46974 * 180.02562 * 11 10 8 13 13 H 1.09002 * 112.84949 * 45.33483 * 12 11 10 14 14 C 1.53781 * 113.61707 * 176.53042 * 12 11 10 15 15 C 1.53777 * 87.08336 * 140.06298 * 14 12 11 16 16 H 1.09008 * 113.61204 * 89.11878 * 15 14 12 17 17 N 1.46492 * 113.61596 * 219.93501 * 15 14 12 18 18 C 1.36939 * 120.00033 * 205.00444 * 17 15 14 19 19 H 1.08000 * 120.00196 * 359.97438 * 18 17 15 20 20 C 1.38822 * 119.99927 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99586 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99982 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46692 * 89.99863 * 22 20 18 24 24 H 1.48497 * 109.47074 * 209.99810 * 22 20 18 25 25 H 1.48497 * 109.46978 * 330.00238 * 22 20 18 26 26 C 1.53775 * 87.07992 * 334.56762 * 15 14 12 27 27 C 1.39177 * 119.74990 * 0.23249 * 7 6 5 28 28 C 1.38917 * 119.84403 * 359.46770 * 27 7 6 29 29 S 1.70647 * 124.24350 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47010 * 269.95382 * 1 2 3 31 31 H 1.09001 * 109.47354 * 29.95529 * 1 2 3 32 32 H 1.08998 * 109.47265 * 149.95939 * 1 2 3 33 33 H 1.08001 * 119.67985 * 0.04955 * 5 4 3 34 34 H 1.07999 * 119.68884 * 180.02562 * 6 5 4 35 35 H 0.96991 * 119.99849 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.46950 * 60.00362 * 11 10 8 37 37 H 1.08992 * 109.47264 * 300.00256 * 11 10 8 38 38 H 1.08997 * 113.61673 * 254.61847 * 14 12 11 39 39 H 1.09009 * 113.61202 * 25.43077 * 14 12 11 40 40 H 0.97005 * 120.00166 * 24.99923 * 17 15 14 41 41 H 0.97004 * 119.99764 * 179.97438 * 21 20 18 42 42 H 1.08993 * 113.61636 * 270.87622 * 26 15 14 43 43 H 1.09008 * 113.61006 * 139.97865 * 26 15 14 44 44 H 1.07996 * 120.07621 * 179.72998 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9106 -0.0005 5 6 4.5762 1.8952 -0.0011 6 6 5.8864 1.5399 -0.0021 7 6 6.2597 0.1886 -0.0036 8 6 7.6874 -0.1854 -0.0052 9 8 8.0087 -1.3581 -0.0070 10 7 8.6351 0.7729 -0.0059 11 6 10.0523 0.4016 -0.0081 12 6 10.9112 1.6677 -0.0078 13 1 10.5654 2.4136 0.7079 14 6 12.4211 1.3879 0.0753 15 6 12.6084 2.5270 -0.9406 16 1 12.7266 3.5079 -0.4800 17 7 13.6288 2.2478 -1.9539 18 6 14.2705 3.2814 -2.5824 19 1 14.0240 4.3025 -2.3314 20 6 15.2379 3.0168 -3.5422 21 7 15.8543 4.0103 -4.1466 22 14 15.6648 1.2507 -3.9759 23 1 14.7926 0.7888 -5.0855 24 1 17.0862 1.1746 -4.3990 25 1 15.4548 0.3847 -2.7880 26 6 11.1738 2.2367 -1.4121 27 6 5.2789 -0.7988 -0.0089 28 6 3.9368 -0.4402 -0.0015 29 16 2.4672 -1.4107 -0.0006 30 1 -0.3633 -0.0008 1.0277 31 1 -0.3634 0.8904 -0.5131 32 1 -0.3634 -0.8896 -0.5144 33 1 4.3055 2.9407 -0.0004 34 1 6.6482 2.3054 -0.0022 35 1 8.3789 1.7084 -0.0049 36 1 10.2723 -0.1869 -0.8988 37 1 10.2747 -0.1882 0.8811 38 1 12.8514 1.6004 1.0539 39 1 12.7053 0.4079 -0.3082 40 1 13.8501 1.3307 -2.1796 41 1 16.5306 3.8254 -4.8170 42 1 11.1171 1.4895 -2.2036 43 1 10.5971 3.1346 -1.6343 44 1 5.5605 -1.8414 -0.0144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086245548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:09 Heat of formation + Delta-G solvation = 28.954340 kcal Electronic energy + Delta-G solvation = -25687.055358 eV Core-core repulsion = 21923.695388 eV Total energy + Delta-G solvation = -3763.359971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.78815 -40.80224 -39.86644 -37.88427 -36.19660 -35.09859 -32.96818 -32.57261 -32.32032 -30.06668 -28.38444 -26.45017 -25.70964 -25.33292 -24.12003 -22.50468 -22.39109 -21.51526 -20.78785 -19.81151 -19.33863 -18.64567 -17.53079 -17.06318 -16.71882 -16.55350 -16.35578 -16.19321 -16.00260 -15.83951 -15.13296 -15.04976 -14.72651 -14.54173 -14.38159 -14.23971 -13.99957 -13.94862 -13.59830 -13.23264 -13.19311 -13.13761 -13.01525 -12.69406 -12.46444 -12.15168 -12.02064 -11.91845 -11.71722 -11.58528 -11.33065 -11.21235 -11.02511 -10.84541 -10.78730 -10.19941 -9.74919 -9.27839 -9.25342 -8.02283 -5.34231 -1.01643 -0.01679 0.07955 0.55876 0.81492 1.37803 1.40125 1.47405 1.83894 2.04880 2.48219 2.62445 2.77849 3.28389 3.42549 3.53124 3.60189 3.73781 3.84625 3.87030 3.96529 4.02902 4.10880 4.24555 4.30996 4.40002 4.55823 4.57243 4.63649 4.67553 4.76970 4.86898 4.96039 4.98029 5.00399 5.05037 5.05630 5.12539 5.22939 5.31253 5.40707 5.45873 5.67451 5.79347 6.23821 6.45016 6.45922 7.09014 7.10100 7.87844 8.04923 9.19211 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.024480 B = 0.001678 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.503530 B =16683.214176 C =16902.738282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.100 3.900 3 N -0.502 5.502 4 C 0.093 3.907 5 C -0.075 4.075 6 C -0.064 4.064 7 C -0.131 4.131 8 C 0.559 3.441 9 O -0.580 6.580 10 N -0.704 5.704 11 C 0.136 3.864 12 C -0.097 4.097 13 H 0.123 0.877 14 C -0.136 4.136 15 C 0.144 3.856 16 H 0.079 0.921 17 N -0.745 5.745 18 C -0.231 4.231 19 H 0.060 0.940 20 C -0.065 4.065 21 N -0.984 5.984 22 Si 0.952 3.048 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.252 1.252 26 C -0.155 4.155 27 C -0.012 4.012 28 C -0.222 4.222 29 S 0.136 5.864 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.162 0.838 34 H 0.172 0.828 35 H 0.416 0.584 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.363 -9.544 13.776 38.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.183 4.183 3 N -0.218 5.218 4 C -0.029 4.029 5 C -0.096 4.096 6 C -0.085 4.085 7 C -0.138 4.138 8 C 0.346 3.654 9 O -0.461 6.461 10 N -0.355 5.355 11 C 0.013 3.987 12 C -0.116 4.116 13 H 0.141 0.859 14 C -0.176 4.176 15 C 0.035 3.965 16 H 0.097 0.903 17 N -0.386 5.386 18 C -0.362 4.362 19 H 0.078 0.922 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.780 3.220 23 H -0.208 1.208 24 H -0.224 1.224 25 H -0.177 1.177 26 C -0.196 4.196 27 C -0.035 4.035 28 C -0.340 4.340 29 S 0.393 5.607 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.180 0.820 34 H 0.189 0.811 35 H 0.255 0.745 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.198 0.802 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -34.609 -10.697 13.726 38.738 hybrid contribution 1.412 0.251 -0.823 1.653 sum -33.198 -10.446 12.903 37.117 Atomic orbital electron populations 1.20846 0.81793 1.06072 1.05931 1.27630 1.03586 0.90435 0.96677 1.66257 1.04102 1.32319 1.19086 1.19741 0.89886 0.92197 1.01070 1.20585 0.89962 0.99577 0.99464 1.21092 0.96793 0.94664 0.95949 1.19799 0.92062 0.94781 1.07122 1.18275 0.85903 0.85208 0.75966 1.90781 1.83511 1.19829 1.52003 1.45783 1.05999 1.10151 1.73611 1.21331 0.78686 0.96897 1.01815 1.22484 0.94188 0.96737 0.98191 0.85931 1.23359 0.94986 0.99135 1.00088 1.21951 0.87479 0.97698 0.89328 0.90327 1.42803 1.45541 1.04094 1.46114 1.19148 1.13957 0.88669 1.14446 0.92176 1.25489 0.99442 1.01107 0.99634 1.69880 1.30396 1.32134 1.31050 0.85450 0.76809 0.81042 0.78731 1.20803 1.22374 1.17659 1.23746 0.98816 1.00758 0.96251 1.20434 0.88699 1.00401 0.94003 1.23932 0.99388 0.97650 1.13075 1.83935 0.93998 1.09687 1.73096 0.87195 0.88312 0.87378 0.82024 0.81095 0.74536 0.92733 0.91043 0.89971 0.90576 0.80232 0.93463 0.91723 0.91325 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.44 71.24 0.74 0.33 16 2 C 0.10 1.35 7.29 88.66 0.65 2.00 16 3 N -0.50 -9.42 10.56 -182.20 -1.92 -11.35 16 4 C 0.09 1.80 7.00 39.95 0.28 2.08 16 5 C -0.08 -1.13 10.03 22.43 0.23 -0.90 16 6 C -0.06 -0.86 9.44 22.17 0.21 -0.65 16 7 C -0.13 -2.51 5.87 -20.11 -0.12 -2.63 16 8 C 0.56 12.85 7.76 86.71 0.67 13.53 16 9 O -0.58 -18.11 16.34 -4.00 -0.07 -18.17 16 10 N -0.70 -12.66 5.51 -466.21 -2.57 -15.22 16 11 C 0.14 2.85 5.50 86.38 0.48 3.32 16 12 C -0.10 -1.96 3.75 -10.27 -0.04 -2.00 16 13 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 14 C -0.14 -3.51 7.39 31.12 0.23 -3.28 16 15 C 0.14 4.94 4.48 45.52 0.20 5.14 16 16 H 0.08 2.76 8.10 -2.38 -0.02 2.74 16 17 N -0.74 -33.76 5.21 -320.46 -1.67 -35.43 16 18 C -0.23 -12.99 10.45 84.04 0.88 -12.11 16 19 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 20 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 21 N -0.98 -63.07 13.97 21.65 0.30 -62.77 16 22 Si 0.95 45.74 27.74 68.60 1.90 47.65 16 23 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 25 H -0.25 -10.93 6.52 99.48 0.65 -10.28 16 26 C -0.16 -4.30 7.43 31.12 0.23 -4.07 16 27 C -0.01 -0.25 9.62 22.66 0.22 -0.03 16 28 C -0.22 -4.29 6.54 22.90 0.15 -4.14 16 29 S 0.14 1.90 23.11 -56.49 -1.31 0.60 16 30 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.10 0.44 8.14 -2.39 -0.02 0.43 16 32 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.17 1.10 6.38 -2.91 -0.02 1.08 16 35 H 0.42 4.80 6.49 -92.71 -0.60 4.20 16 36 H 0.05 1.37 7.88 -2.39 -0.02 1.35 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 2.04 8.08 -2.38 -0.02 2.02 16 40 H 0.36 16.08 5.79 -92.70 -0.54 15.54 16 41 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.06 2.00 7.92 -2.39 -0.02 1.98 16 43 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 44 H 0.14 2.91 7.64 -2.91 -0.02 2.89 16 Total: -1.00 -78.49 381.35 0.00 -78.49 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.15 Total: 23.00 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 5.47 Total: -6.79 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -5.86 Total: -124.77 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.07 Total: -18.17 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.90 Total: 47.65 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.31 Total: 0.60 kcal Total: -78.49 0.00 -78.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086245548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.447 kcal (2) G-P(sol) polarization free energy of solvation -78.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds