Wall clock time and date at job start Wed Apr 1 2020 04:05:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.53003 * 109.47370 * 2 1
4 4 H 1.08998 * 109.87532 * 55.80383 * 3 2 1
5 5 C 1.54320 * 109.88124 * 294.78512 * 3 2 1
6 6 H 1.08995 * 110.72018 * 336.92793 * 5 3 2
7 7 N 1.46502 * 110.72135 * 100.02845 * 5 3 2
8 8 C 1.34769 * 119.99989 * 204.99819 * 7 5 3
9 9 O 1.21616 * 120.00207 * 0.02562 * 8 7 5
10 10 C 1.47378 * 120.00166 * 179.97438 * 8 7 5
11 11 N 1.29693 * 121.82648 * 0.02752 * 10 8 7
12 12 S 1.56001 * 111.74220 * 179.97438 * 11 10 8
13 13 C 1.76262 * 97.56134 * 359.97438 * 12 11 10
14 14 C 1.38699 * 134.17942 * 180.02562 * 13 12 11
15 15 C 1.36804 * 119.62116 * 180.02562 * 14 13 12
16 16 C 1.38899 * 120.31167 * 359.97438 * 15 14 13
17 17 C 1.36336 * 121.03560 * 359.97438 * 16 15 14
18 18 C 1.40418 * 119.95924 * 0.02562 * 17 16 15
19 19 C 1.55158 * 102.93997 * 218.38734 * 5 3 2
20 20 C 1.54911 * 101.58492 * 35.50468 * 19 5 3
21 21 N 1.47025 * 109.88144 * 176.97380 * 3 2 1
22 22 C 1.36931 * 125.65131 * 298.39646 * 21 3 2
23 23 H 1.08000 * 120.00237 * 345.37432 * 22 21 3
24 24 C 1.38819 * 120.00198 * 165.37951 * 22 21 3
25 25 N 1.31618 * 119.99604 * 359.97438 * 24 22 21
26 26 Si 1.86792 * 120.00136 * 179.97438 * 24 22 21
27 27 H 1.48496 * 109.47240 * 89.99886 * 26 24 22
28 28 H 1.48503 * 109.47398 * 209.99749 * 26 24 22
29 29 H 1.48497 * 109.47184 * 329.99692 * 26 24 22
30 30 H 1.09004 * 109.46812 * 65.57868 * 1 2 3
31 31 H 1.08991 * 109.47594 * 185.57810 * 1 2 3
32 32 H 1.09002 * 109.47487 * 305.58357 * 1 2 3
33 33 H 1.09000 * 109.47387 * 240.00083 * 2 1 3
34 34 H 1.09000 * 109.47194 * 119.99942 * 2 1 3
35 35 H 0.97001 * 119.99655 * 24.99247 * 7 5 3
36 36 H 1.07998 * 120.19137 * 0.02562 * 14 13 12
37 37 H 1.08005 * 119.84594 * 180.02562 * 15 14 13
38 38 H 1.08000 * 119.48714 * 179.72676 * 16 15 14
39 39 H 1.08001 * 120.02174 * 179.97438 * 17 16 15
40 40 H 1.09002 * 111.00046 * 153.57868 * 19 5 3
41 41 H 1.08996 * 111.00671 * 277.42722 * 19 5 3
42 42 H 1.08991 * 110.36831 * 204.15251 * 20 19 5
43 43 H 1.09002 * 110.36799 * 81.82269 * 20 19 5
44 44 H 0.97003 * 120.00320 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6204 1.9839 0.8478
5 6 1.6414 2.1401 -1.3175
6 1 1.4636 1.4065 -2.1038
7 7 0.4594 2.9830 -1.1208
8 6 -0.3446 3.2702 -2.1636
9 8 -0.0892 2.8293 -3.2678
10 6 -1.5339 4.1177 -1.9655
11 7 -1.8399 4.6062 -0.8037
12 16 -3.1400 5.4663 -0.8627
13 6 -3.4698 5.2706 -2.5831
14 6 -4.4619 5.7315 -3.4357
15 6 -4.4295 5.3876 -4.7594
16 6 -3.4097 4.5820 -5.2496
17 6 -2.4240 4.1188 -4.4294
18 6 -2.4305 4.4549 -3.0661
19 6 2.8863 3.0075 -1.6419
20 6 4.0373 2.0988 -1.1426
21 7 3.5084 1.4536 0.0730
22 6 4.2603 0.9478 1.0995
23 1 3.7940 0.7098 2.0442
24 6 5.6220 0.7410 0.9262
25 7 6.1902 1.0306 -0.2252
26 14 6.6478 0.0517 2.3267
27 1 6.6646 -1.4309 2.2450
28 1 8.0362 0.5687 2.2246
29 1 6.0584 0.4693 3.6242
30 1 -0.3633 0.4249 -0.9358
31 1 -0.3634 -1.0227 0.0999
32 1 -0.3634 0.5980 0.8358
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5138 0.8900
35 1 0.2555 3.3343 -0.2399
36 1 -5.2556 6.3584 -3.0568
37 1 -5.2000 5.7449 -5.4267
38 1 -3.3995 4.3150 -6.2960
39 1 -1.6391 3.4930 -4.8279
40 1 2.9680 3.1882 -2.7137
41 1 2.8626 3.9469 -1.0897
42 1 4.9161 2.6971 -0.9028
43 1 4.2816 1.3484 -1.8945
44 1 7.1418 0.8865 -0.3463
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001087583239.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:05:06
Heat of formation + Delta-G solvation = 42.779499 kcal
Electronic energy + Delta-G solvation = -27591.822089 eV
Core-core repulsion = 23829.061622 eV
Total energy + Delta-G solvation = -3762.760467 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 345.125 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.76681 -39.35521 -37.77580 -36.96678 -34.06422 -32.75303 -31.72197 -31.41416
-30.85380 -29.07323 -27.08500 -25.81720 -24.30758 -23.37336 -22.73925 -21.90456
-20.52082 -20.20638 -19.52271 -18.90174 -17.50241 -16.89524 -16.59872 -15.84332
-15.54273 -15.51079 -14.98638 -14.75510 -14.26396 -14.20653 -13.96468 -13.90995
-13.69801 -13.17285 -12.68557 -12.61976 -12.44564 -12.04238 -12.01928 -11.93136
-11.65326 -11.44954 -11.14166 -10.97790 -10.88592 -10.84834 -10.61582 -10.45670
-10.31380 -10.11186 -10.07573 -9.82998 -9.69632 -9.64842 -9.38788 -8.70705
-8.58246 -8.15118 -6.80560 -5.75271 -3.11501 0.08399 0.78156 1.03708
1.40132 1.50438 3.03734 3.16167 3.39293 3.42489 3.44814 3.46198
4.05362 4.37171 4.48955 4.60178 4.82838 4.93822 5.10568 5.16009
5.27433 5.36538 5.50229 5.55243 5.58137 5.67669 5.76690 5.79812
5.82220 5.86301 6.04554 6.07279 6.15133 6.23893 6.27930 6.42678
6.45893 6.48639 6.55341 6.66852 6.73373 6.94907 7.13798 7.50914
7.59761 7.66616 7.78950 8.22715 8.27933 9.18223 9.79068 10.46984
11.36787
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.022891 B = 0.002510 C = 0.002439
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1222.919066 B =11153.483827 C =11477.488166
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.131 4.131
3 C 0.161 3.839
4 H 0.036 0.964
5 C 0.136 3.864
6 H 0.098 0.902
7 N -0.690 5.690
8 C 0.587 3.413
9 O -0.528 6.528
10 C 0.096 3.904
11 N -0.488 5.488
12 S 0.382 5.618
13 C -0.201 4.201
14 C -0.076 4.076
15 C -0.089 4.089
16 C -0.121 4.121
17 C -0.040 4.040
18 C -0.088 4.088
19 C -0.157 4.157
20 C 0.175 3.825
21 N -0.593 5.593
22 C -0.227 4.227
23 H 0.075 0.925
24 C -0.003 4.003
25 N -0.917 5.917
26 Si 0.910 3.090
27 H -0.288 1.288
28 H -0.291 1.291
29 H -0.281 1.281
30 H 0.046 0.954
31 H 0.044 0.956
32 H 0.046 0.954
33 H 0.058 0.942
34 H 0.065 0.935
35 H 0.406 0.594
36 H 0.133 0.867
37 H 0.134 0.866
38 H 0.134 0.866
39 H 0.149 0.851
40 H 0.064 0.936
41 H 0.062 0.938
42 H 0.074 0.926
43 H 0.029 0.971
44 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.051 9.919 -7.174 26.100
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.171 4.171
3 C 0.053 3.947
4 H 0.053 0.947
5 C 0.032 3.968
6 H 0.116 0.884
7 N -0.340 5.340
8 C 0.367 3.633
9 O -0.404 6.404
10 C -0.092 4.092
11 N -0.313 5.313
12 S 0.541 5.459
13 C -0.321 4.321
14 C -0.098 4.098
15 C -0.112 4.112
16 C -0.140 4.140
17 C -0.062 4.062
18 C -0.098 4.098
19 C -0.196 4.196
20 C 0.050 3.950
21 N -0.318 5.318
22 C -0.356 4.356
23 H 0.093 0.907
24 C -0.201 4.201
25 N -0.563 5.563
26 Si 0.741 3.259
27 H -0.215 1.215
28 H -0.217 1.217
29 H -0.207 1.207
30 H 0.066 0.934
31 H 0.064 0.936
32 H 0.065 0.935
33 H 0.077 0.923
34 H 0.084 0.916
35 H 0.242 0.758
36 H 0.151 0.849
37 H 0.152 0.848
38 H 0.152 0.848
39 H 0.167 0.833
40 H 0.083 0.917
41 H 0.080 0.920
42 H 0.093 0.907
43 H 0.047 0.953
44 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -22.742 10.193 -5.666 25.558
hybrid contribution 0.833 -0.883 -0.471 1.302
sum -21.909 9.310 -6.137 24.583
Atomic orbital electron populations
1.21769 0.97295 1.00482 1.00918 1.22008 0.93508 0.99079 1.02466
1.21080 0.87119 0.93401 0.93149 0.94663 1.22233 0.83067 0.92402
0.99132 0.88385 1.45950 1.26002 1.50657 1.11399 1.17088 0.81098
0.80050 0.85082 1.90772 1.72755 1.52862 1.24006 1.22035 0.98706
1.01403 0.87087 1.71452 1.17237 1.14921 1.27720 1.81411 1.16708
1.46368 1.01400 1.24297 1.00927 1.04603 1.02318 1.19924 0.96980
1.00220 0.92668 1.21080 0.98283 0.96915 0.94962 1.20937 0.94465
0.98161 1.00477 1.20886 0.98341 0.96992 0.89957 1.19616 0.94428
1.00499 0.95307 1.23444 0.96587 0.99130 1.00466 1.21434 0.93056
0.92872 0.87673 1.44437 0.98280 1.68375 1.20722 1.18939 0.89921
1.35852 0.90853 0.90716 1.24908 0.97222 1.00930 0.96991 1.69926
1.10657 1.52832 1.22875 0.86151 0.79661 0.78863 0.81266 1.21516
1.21691 1.20655 0.93448 0.93644 0.93459 0.92286 0.91649 0.75823
0.84879 0.84822 0.84843 0.83299 0.91744 0.91966 0.90748 0.95303
0.93620
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.29 9.58 37.15 0.36 -1.93 16
2 C -0.13 -2.48 5.41 -26.73 -0.14 -2.62 16
3 C 0.16 3.25 2.94 -66.95 -0.20 3.05 16
4 H 0.04 0.71 7.71 -51.93 -0.40 0.31 16
5 C 0.14 2.50 2.02 -66.10 -0.13 2.36 16
6 H 0.10 1.90 7.18 -51.93 -0.37 1.53 16
7 N -0.69 -11.00 4.91 -53.12 -0.26 -11.26 16
8 C 0.59 9.40 7.80 -12.54 -0.10 9.30 16
9 O -0.53 -9.46 14.66 5.26 0.08 -9.38 16
10 C 0.10 1.35 6.82 -81.98 -0.56 0.79 16
11 N -0.49 -6.34 10.49 28.25 0.30 -6.05 16
12 S 0.38 3.78 23.36 -107.50 -2.51 1.27 16
13 C -0.20 -2.07 6.73 -38.50 -0.26 -2.33 16
14 C -0.08 -0.58 10.03 -39.93 -0.40 -0.98 16
15 C -0.09 -0.61 10.00 -39.86 -0.40 -1.01 16
16 C -0.12 -0.98 9.93 -40.02 -0.40 -1.38 16
17 C -0.04 -0.44 9.57 -39.45 -0.38 -0.82 16
18 C -0.09 -1.10 6.10 -105.09 -0.64 -1.74 16
19 C -0.16 -3.09 6.77 -24.58 -0.17 -3.25 16
20 C 0.17 4.22 5.41 -2.52 -0.01 4.21 16
21 N -0.59 -14.73 3.13 -162.57 -0.51 -15.24 16
22 C -0.23 -6.17 9.75 -15.06 -0.15 -6.32 16
23 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16
24 C 0.00 -0.10 5.47 -17.43 -0.10 -0.19 16
25 N -0.92 -26.59 10.57 55.49 0.59 -26.00 16
26 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16
27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
30 H 0.05 0.74 7.40 -51.93 -0.38 0.36 16
31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16
33 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16
34 H 0.06 1.32 7.90 -51.93 -0.41 0.91 16
35 H 0.41 6.06 7.81 -40.82 -0.32 5.75 16
36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16
37 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16
38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16
39 H 0.15 1.79 6.64 -52.49 -0.35 1.44 16
40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
42 H 0.07 1.99 6.93 -51.93 -0.36 1.63 16
43 H 0.03 0.76 8.06 -51.93 -0.42 0.34 16
44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16
LS Contribution 372.90 15.07 5.62 5.62
Total: -1.00 -30.97 372.90 -11.33 -42.30
By element:
Atomic # 1 Polarization: 10.67 SS G_CDS: -5.94 Total: 4.73 kcal
Atomic # 6 Polarization: 0.80 SS G_CDS: -3.67 Total: -2.87 kcal
Atomic # 7 Polarization: -58.66 SS G_CDS: 0.11 Total: -58.54 kcal
Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal
Atomic # 16 Polarization: 3.78 SS G_CDS: -2.51 Total: 1.27 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -30.97 -11.33 -42.30 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087583239.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.084 kcal
(2) G-P(sol) polarization free energy of solvation -30.970 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.114 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.334 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.779 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds