Wall clock time and date at job start Wed Apr 1 2020 04:05:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.53003 * 109.47370 * 2 1
4 4 H 1.08998 * 109.87532 * 55.80383 * 3 2 1
5 5 C 1.54320 * 109.88124 * 294.78512 * 3 2 1
6 6 H 1.08995 * 110.72018 * 336.92793 * 5 3 2
7 7 N 1.46502 * 110.72135 * 100.02845 * 5 3 2
8 8 C 1.34769 * 119.99989 * 204.99819 * 7 5 3
9 9 O 1.21616 * 120.00207 * 0.02562 * 8 7 5
10 10 C 1.47378 * 120.00166 * 179.97438 * 8 7 5
11 11 N 1.29693 * 121.82648 * 0.02752 * 10 8 7
12 12 S 1.56001 * 111.74220 * 179.97438 * 11 10 8
13 13 C 1.76262 * 97.56134 * 359.97438 * 12 11 10
14 14 C 1.38699 * 134.17942 * 180.02562 * 13 12 11
15 15 C 1.36804 * 119.62116 * 180.02562 * 14 13 12
16 16 C 1.38899 * 120.31167 * 359.97438 * 15 14 13
17 17 C 1.36336 * 121.03560 * 359.97438 * 16 15 14
18 18 C 1.40418 * 119.95924 * 0.02562 * 17 16 15
19 19 C 1.55158 * 102.93997 * 218.38734 * 5 3 2
20 20 C 1.54911 * 101.58492 * 35.50468 * 19 5 3
21 21 N 1.47025 * 109.88144 * 176.97380 * 3 2 1
22 22 C 1.36931 * 125.65131 * 298.39646 * 21 3 2
23 23 H 1.08000 * 120.00237 * 345.37432 * 22 21 3
24 24 C 1.38819 * 120.00198 * 165.37951 * 22 21 3
25 25 N 1.31618 * 119.99604 * 359.97438 * 24 22 21
26 26 Si 1.86792 * 120.00136 * 179.97438 * 24 22 21
27 27 H 1.48496 * 109.47240 * 89.99886 * 26 24 22
28 28 H 1.48503 * 109.47398 * 209.99749 * 26 24 22
29 29 H 1.48497 * 109.47184 * 329.99692 * 26 24 22
30 30 H 1.09004 * 109.46812 * 65.57868 * 1 2 3
31 31 H 1.08991 * 109.47594 * 185.57810 * 1 2 3
32 32 H 1.09002 * 109.47487 * 305.58357 * 1 2 3
33 33 H 1.09000 * 109.47387 * 240.00083 * 2 1 3
34 34 H 1.09000 * 109.47194 * 119.99942 * 2 1 3
35 35 H 0.97001 * 119.99655 * 24.99247 * 7 5 3
36 36 H 1.07998 * 120.19137 * 0.02562 * 14 13 12
37 37 H 1.08005 * 119.84594 * 180.02562 * 15 14 13
38 38 H 1.08000 * 119.48714 * 179.72676 * 16 15 14
39 39 H 1.08001 * 120.02174 * 179.97438 * 17 16 15
40 40 H 1.09002 * 111.00046 * 153.57868 * 19 5 3
41 41 H 1.08996 * 111.00671 * 277.42722 * 19 5 3
42 42 H 1.08991 * 110.36831 * 204.15251 * 20 19 5
43 43 H 1.09002 * 110.36799 * 81.82269 * 20 19 5
44 44 H 0.97003 * 120.00320 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6204 1.9839 0.8478
5 6 1.6414 2.1401 -1.3175
6 1 1.4636 1.4065 -2.1038
7 7 0.4594 2.9830 -1.1208
8 6 -0.3446 3.2702 -2.1636
9 8 -0.0892 2.8293 -3.2678
10 6 -1.5339 4.1177 -1.9655
11 7 -1.8399 4.6062 -0.8037
12 16 -3.1400 5.4663 -0.8627
13 6 -3.4698 5.2706 -2.5831
14 6 -4.4619 5.7315 -3.4357
15 6 -4.4295 5.3876 -4.7594
16 6 -3.4097 4.5820 -5.2496
17 6 -2.4240 4.1188 -4.4294
18 6 -2.4305 4.4549 -3.0661
19 6 2.8863 3.0075 -1.6419
20 6 4.0373 2.0988 -1.1426
21 7 3.5084 1.4536 0.0730
22 6 4.2603 0.9478 1.0995
23 1 3.7940 0.7098 2.0442
24 6 5.6220 0.7410 0.9262
25 7 6.1902 1.0306 -0.2252
26 14 6.6478 0.0517 2.3267
27 1 6.6646 -1.4309 2.2450
28 1 8.0362 0.5687 2.2246
29 1 6.0584 0.4693 3.6242
30 1 -0.3633 0.4249 -0.9358
31 1 -0.3634 -1.0227 0.0999
32 1 -0.3634 0.5980 0.8358
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5138 0.8900
35 1 0.2555 3.3343 -0.2399
36 1 -5.2556 6.3584 -3.0568
37 1 -5.2000 5.7449 -5.4267
38 1 -3.3995 4.3150 -6.2960
39 1 -1.6391 3.4930 -4.8279
40 1 2.9680 3.1882 -2.7137
41 1 2.8626 3.9469 -1.0897
42 1 4.9161 2.6971 -0.9028
43 1 4.2816 1.3484 -1.8945
44 1 7.1418 0.8865 -0.3463
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001087583239.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:05:05
Heat of formation + Delta-G solvation = 24.492528 kcal
Electronic energy + Delta-G solvation = -27592.615071 eV
Core-core repulsion = 23829.061622 eV
Total energy + Delta-G solvation = -3763.553449 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 345.125 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.76391 -40.54266 -39.22045 -37.90553 -35.69346 -34.33932 -33.52291 -32.08113
-31.62679 -30.90822 -28.54209 -27.19333 -26.04843 -24.16450 -23.81919 -23.12721
-22.16609 -21.66952 -21.02242 -19.72909 -18.79320 -18.56835 -17.63767 -17.11720
-16.73573 -16.56878 -16.19373 -15.91256 -15.74449 -15.56033 -15.37192 -15.06758
-14.88447 -14.58317 -14.33791 -13.81743 -13.59717 -13.35307 -13.26993 -13.10067
-12.89863 -12.74677 -12.71147 -12.65171 -12.39554 -12.25991 -12.08271 -12.00830
-11.94024 -11.71155 -11.60241 -11.42010 -11.05163 -10.86210 -10.69225 -10.12517
-10.08072 -8.91176 -8.84914 -7.86749 -5.24931 -0.77614 0.06267 0.28468
0.57883 0.63341 1.46323 1.47874 1.56327 1.92787 1.95958 2.49916
2.66992 3.21296 3.32929 3.47124 3.63603 3.78461 3.85750 3.89245
4.08695 4.14372 4.31547 4.34305 4.36551 4.41922 4.53842 4.55820
4.59617 4.69291 4.79001 4.81738 4.97359 4.98860 5.07967 5.13189
5.17162 5.23540 5.37379 5.40082 5.46072 5.49118 5.55209 5.60490
5.69719 5.85846 6.21540 6.38398 6.99161 7.07713 7.74478 8.42007
9.24627
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.022891 B = 0.002510 C = 0.002439
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1222.919066 B =11153.483827 C =11477.488166
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.124 4.124
3 C 0.159 3.841
4 H 0.045 0.955
5 C 0.155 3.845
6 H 0.088 0.912
7 N -0.685 5.685
8 C 0.588 3.412
9 O -0.554 6.554
10 C 0.069 3.931
11 N -0.509 5.509
12 S 0.439 5.561
13 C -0.213 4.213
14 C -0.072 4.072
15 C -0.080 4.080
16 C -0.111 4.111
17 C -0.071 4.071
18 C -0.113 4.113
19 C -0.142 4.142
20 C 0.184 3.816
21 N -0.612 5.612
22 C -0.234 4.234
23 H 0.080 0.920
24 C -0.061 4.061
25 N -0.948 5.948
26 Si 0.976 3.024
27 H -0.287 1.287
28 H -0.295 1.295
29 H -0.268 1.268
30 H 0.045 0.955
31 H 0.062 0.938
32 H 0.059 0.941
33 H 0.041 0.959
34 H 0.051 0.949
35 H 0.413 0.587
36 H 0.168 0.832
37 H 0.175 0.825
38 H 0.158 0.842
39 H 0.128 0.872
40 H 0.072 0.928
41 H 0.069 0.931
42 H 0.042 0.958
43 H -0.001 1.001
44 H 0.248 0.752
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.852 11.362 -6.956 29.975
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.163 4.163
3 C 0.052 3.948
4 H 0.063 0.937
5 C 0.050 3.950
6 H 0.106 0.894
7 N -0.336 5.336
8 C 0.370 3.630
9 O -0.431 6.431
10 C -0.118 4.118
11 N -0.337 5.337
12 S 0.599 5.401
13 C -0.334 4.334
14 C -0.094 4.094
15 C -0.103 4.103
16 C -0.130 4.130
17 C -0.093 4.093
18 C -0.123 4.123
19 C -0.182 4.182
20 C 0.058 3.942
21 N -0.337 5.337
22 C -0.363 4.363
23 H 0.098 0.902
24 C -0.255 4.255
25 N -0.596 5.596
26 Si 0.804 3.196
27 H -0.214 1.214
28 H -0.222 1.222
29 H -0.193 1.193
30 H 0.064 0.936
31 H 0.081 0.919
32 H 0.078 0.922
33 H 0.060 0.940
34 H 0.070 0.930
35 H 0.250 0.750
36 H 0.186 0.814
37 H 0.192 0.808
38 H 0.176 0.824
39 H 0.146 0.854
40 H 0.091 0.909
41 H 0.088 0.912
42 H 0.060 0.940
43 H 0.017 0.983
44 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -26.598 11.647 -5.433 29.540
hybrid contribution 1.833 -1.229 -0.587 2.284
sum -24.765 10.418 -6.020 27.533
Atomic orbital electron populations
1.21641 0.94237 1.01919 1.01334 1.21879 0.96059 0.97488 1.00920
1.21227 0.84668 0.94633 0.94315 0.93737 1.21791 0.83531 0.91995
0.97690 0.89424 1.45734 1.25278 1.50567 1.11986 1.17411 0.81488
0.79715 0.84386 1.90752 1.73580 1.53875 1.24904 1.21718 0.98859
1.02971 0.88209 1.71182 1.19132 1.15454 1.27933 1.81076 1.14227
1.43942 1.00850 1.24556 1.01292 1.04851 1.02739 1.20452 0.96662
0.99582 0.92684 1.21569 0.98193 0.95294 0.95239 1.21301 0.93461
0.96963 1.01279 1.20886 0.99556 0.98638 0.90228 1.19716 0.95175
1.01869 0.95554 1.23257 0.95470 0.98580 1.00846 1.21136 0.93647
0.92322 0.87094 1.44664 1.00294 1.68448 1.20270 1.19285 0.90418
1.34896 0.91675 0.90177 1.25712 0.98490 1.01903 0.99385 1.70132
1.10400 1.54304 1.24810 0.85121 0.77635 0.77867 0.78962 1.21382
1.22192 1.19274 0.93625 0.91873 0.92203 0.94027 0.92983 0.75035
0.81449 0.80788 0.82418 0.85393 0.90922 0.91245 0.93955 0.98291
0.94294
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.00 9.58 71.98 0.69 -3.31 16
2 C -0.12 -4.73 5.41 30.59 0.17 -4.56 16
3 C 0.16 6.50 2.94 45.34 0.13 6.64 16
4 H 0.05 1.78 7.71 -2.39 -0.02 1.76 16
5 C 0.16 5.82 2.02 46.18 0.09 5.92 16
6 H 0.09 3.52 7.18 -2.39 -0.02 3.50 16
7 N -0.69 -21.94 4.91 -440.23 -2.16 -24.10 16
8 C 0.59 19.18 7.80 86.65 0.68 19.85 16
9 O -0.55 -20.56 14.66 -4.08 -0.06 -20.62 16
10 C 0.07 1.95 6.82 43.85 0.30 2.25 16
11 N -0.51 -12.75 10.49 -64.54 -0.68 -13.43 16
12 S 0.44 7.72 23.36 -56.49 -1.32 6.40 16
13 C -0.21 -3.90 6.73 22.97 0.15 -3.74 16
14 C -0.07 -0.81 10.03 22.04 0.22 -0.59 16
15 C -0.08 -0.74 10.00 22.09 0.22 -0.52 16
16 C -0.11 -1.53 9.93 21.98 0.22 -1.31 16
17 C -0.07 -1.56 9.57 22.36 0.21 -1.35 16
18 C -0.11 -2.77 6.10 -20.17 -0.12 -2.89 16
19 C -0.14 -5.77 6.77 31.99 0.22 -5.55 16
20 C 0.18 9.34 5.41 86.85 0.47 9.81 16
21 N -0.61 -31.35 3.13 -668.24 -2.09 -33.44 16
22 C -0.23 -12.97 9.75 84.04 0.82 -12.15 16
23 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16
24 C -0.06 -3.49 5.47 84.86 0.46 -3.03 16
25 N -0.95 -57.35 10.57 21.65 0.23 -57.12 16
26 Si 0.98 45.89 29.55 68.60 2.03 47.92 16
27 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16
28 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16
29 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16
30 H 0.04 1.39 7.40 -2.39 -0.02 1.37 16
31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
33 H 0.04 1.71 8.07 -2.39 -0.02 1.69 16
34 H 0.05 2.11 7.90 -2.39 -0.02 2.09 16
35 H 0.41 12.17 7.81 -92.71 -0.72 11.45 16
36 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16
37 H 0.17 0.25 8.06 -2.91 -0.02 0.23 16
38 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16
39 H 0.13 3.27 6.64 -2.91 -0.02 3.25 16
40 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16
41 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16
42 H 0.04 2.40 6.93 -2.39 -0.02 2.38 16
43 H 0.00 -0.05 8.06 -2.39 -0.02 -0.07 16
44 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16
Total: -1.00 -70.77 372.90 1.19 -69.58
By element:
Atomic # 1 Polarization: 19.04 SS G_CDS: 0.31 Total: 19.35 kcal
Atomic # 6 Polarization: 0.52 SS G_CDS: 4.93 Total: 5.45 kcal
Atomic # 7 Polarization: -123.39 SS G_CDS: -4.70 Total: -128.09 kcal
Atomic # 8 Polarization: -20.56 SS G_CDS: -0.06 Total: -20.62 kcal
Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal
Atomic # 16 Polarization: 7.72 SS G_CDS: -1.32 Total: 6.40 kcal
Total: -70.77 1.19 -69.58 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087583239.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.076 kcal
(2) G-P(sol) polarization free energy of solvation -70.773 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.303 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.583 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.493 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds