Wall clock time and date at job start Wed Apr 1 2020 04:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.09001 * 109.87419 * 304.64245 * 3 2 1 5 5 C 1.54324 * 110.01018 * 183.54384 * 3 2 1 6 6 H 1.08994 * 110.71818 * 336.85809 * 5 3 2 7 7 N 1.46501 * 110.72009 * 99.95217 * 5 3 2 8 8 C 1.34765 * 120.00096 * 204.99747 * 7 5 3 9 9 O 1.21656 * 120.00088 * 0.02562 * 8 7 5 10 10 C 1.46987 * 120.00075 * 180.02562 * 8 7 5 11 11 C 1.33681 * 124.63717 * 179.72858 * 10 8 7 12 12 C 1.40322 * 115.50236 * 179.79415 * 11 10 8 13 13 C 1.41637 * 129.15035 * 180.15492 * 12 11 10 14 14 C 1.36524 * 118.85896 * 180.33866 * 13 12 11 15 15 C 1.38777 * 119.72755 * 0.02562 * 14 13 12 16 16 N 1.31287 * 121.06860 * 359.95687 * 15 14 13 17 17 C 1.33439 * 121.98221 * 0.08251 * 16 15 14 18 18 S 1.75472 * 124.64062 * 0.02562 * 10 8 7 19 19 C 1.55155 * 102.94142 * 218.31845 * 5 3 2 20 20 C 1.54692 * 101.67753 * 35.33195 * 19 5 3 21 21 N 1.47022 * 109.88407 * 65.65756 * 3 2 1 22 22 C 1.36938 * 125.64637 * 298.48048 * 21 3 2 23 23 H 1.08003 * 120.00303 * 333.98391 * 22 21 3 24 24 C 1.38810 * 120.00262 * 153.99361 * 22 21 3 25 25 N 1.31625 * 119.99681 * 335.06661 * 24 22 21 26 26 Si 1.86797 * 120.00662 * 155.06350 * 24 22 21 27 27 H 1.48497 * 109.46791 * 59.99502 * 26 24 22 28 28 H 1.48505 * 109.46819 * 300.00185 * 26 24 22 29 29 H 1.48489 * 109.47712 * 180.02562 * 26 24 22 30 30 H 1.08999 * 109.46847 * 171.63659 * 1 2 3 31 31 H 1.08998 * 109.46937 * 291.63772 * 1 2 3 32 32 H 1.08996 * 109.47099 * 51.64429 * 1 2 3 33 33 H 1.08995 * 109.46876 * 240.00079 * 2 1 3 34 34 H 1.08997 * 109.46660 * 120.00106 * 2 1 3 35 35 H 0.97001 * 119.99764 * 25.00649 * 7 5 3 36 36 H 1.07995 * 122.24978 * 359.97438 * 11 10 8 37 37 H 1.08000 * 120.57278 * 0.36424 * 13 12 11 38 38 H 1.07999 * 120.14050 * 179.97438 * 14 13 12 39 39 H 1.07989 * 119.46484 * 180.02562 * 15 14 13 40 40 H 1.09002 * 111.00414 * 153.58087 * 19 5 3 41 41 H 1.09007 * 111.00313 * 277.42805 * 19 5 3 42 42 H 1.08998 * 110.39135 * 204.36106 * 20 19 5 43 43 H 1.09000 * 110.23013 * 82.11617 * 20 19 5 44 44 H 0.97001 * 119.99796 * 353.73046 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6142 1.9861 -0.8434 5 6 3.5806 1.4580 -0.0896 6 1 3.9971 0.5164 0.2680 7 7 4.0173 1.7278 -1.4618 8 6 5.2271 1.3056 -1.8792 9 8 5.9565 0.7001 -1.1167 10 6 5.6655 1.5768 -3.2557 11 6 6.8450 1.2065 -3.7644 12 6 7.0633 1.5615 -5.1043 13 6 8.1935 1.3155 -5.9218 14 6 8.1853 1.7663 -7.2104 15 6 7.0794 2.4523 -7.6925 16 7 6.0353 2.6763 -6.9288 17 6 5.9844 2.2615 -5.6616 18 16 4.7152 2.4373 -4.4539 19 6 3.9716 2.6282 0.8511 20 6 2.9011 2.5087 1.9613 21 7 1.6694 2.1039 1.2597 22 6 0.3916 2.3143 1.7047 23 1 -0.4215 2.3868 0.9975 24 6 0.1412 2.4345 3.0647 25 7 0.9608 1.8850 3.9358 26 14 -1.3588 3.3761 3.6588 27 1 -2.5879 2.7382 3.1227 28 1 -1.2820 4.7807 3.1825 29 1 -1.3984 3.3587 5.1430 30 1 -0.3633 -1.0167 -0.1495 31 1 -0.3633 0.3789 0.9552 32 1 -0.3633 0.6377 -0.8058 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.4356 2.2103 -2.0698 36 1 7.5792 0.6677 -3.1840 37 1 9.0469 0.7802 -5.5326 38 1 9.0362 1.5906 -7.8518 39 1 7.0773 2.8067 -8.7126 40 1 4.9740 2.4864 1.2553 41 1 3.8913 3.5862 0.3371 42 1 2.7578 3.4694 2.4558 43 1 3.1926 1.7480 2.6856 44 1 1.6874 1.3205 3.6289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087783062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:14 Heat of formation + Delta-G solvation = 39.485493 kcal Electronic energy + Delta-G solvation = -27123.659217 eV Core-core repulsion = 23360.755911 eV Total energy + Delta-G solvation = -3762.903306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -40.83926 -39.91721 -38.04661 -36.07335 -34.36297 -32.83014 -32.61217 -32.05995 -30.26580 -28.63748 -27.06542 -25.37084 -24.66546 -24.11661 -22.29240 -21.65381 -20.63478 -20.38570 -19.68218 -18.75806 -17.57200 -17.37354 -16.77939 -16.18840 -15.77143 -15.43364 -15.30794 -14.69304 -14.59534 -14.32419 -13.92109 -13.63351 -13.57391 -13.32093 -13.17844 -12.93059 -12.71983 -12.44349 -12.25180 -11.97761 -11.67065 -11.42902 -11.13023 -10.97767 -10.83179 -10.77916 -10.53937 -10.33120 -10.16200 -10.09169 -10.02650 -9.93892 -9.85906 -9.43710 -9.18766 -8.84601 -8.45402 -8.41456 -6.92536 -6.06544 -3.23912 -0.20676 0.61269 0.76972 1.41274 1.55329 2.97449 2.99398 3.25247 3.48085 3.51987 3.69513 3.97832 4.17046 4.31448 4.43676 4.55239 4.63120 4.80384 5.04251 5.09818 5.24866 5.27249 5.32105 5.38775 5.44195 5.61656 5.65680 5.73607 5.89152 5.95362 5.99651 6.03546 6.12876 6.23679 6.31774 6.44697 6.56230 6.63402 6.73332 6.91931 7.00763 7.07595 7.25617 7.32640 7.42389 7.85079 8.06280 8.47991 9.00098 9.77698 10.35674 11.21268 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.024428 B = 0.002333 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.939347 B =12000.475869 C =12299.668089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.156 3.844 4 H 0.037 0.963 5 C 0.134 3.866 6 H 0.099 0.901 7 N -0.706 5.706 8 C 0.587 3.413 9 O -0.524 6.524 10 C -0.217 4.217 11 C -0.043 4.043 12 C -0.133 4.133 13 C -0.022 4.022 14 C -0.179 4.179 15 C 0.143 3.857 16 N -0.458 5.458 17 C 0.057 3.943 18 S 0.184 5.816 19 C -0.145 4.145 20 C 0.143 3.857 21 N -0.589 5.589 22 C -0.326 4.326 23 H 0.063 0.937 24 C -0.023 4.023 25 N -0.912 5.912 26 Si 1.064 2.936 27 H -0.292 1.292 28 H -0.294 1.294 29 H -0.286 1.286 30 H 0.029 0.971 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.397 0.603 36 H 0.159 0.841 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.168 0.832 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.031 0.969 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.834 -0.346 -21.993 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.048 3.952 4 H 0.054 0.946 5 C 0.030 3.970 6 H 0.117 0.883 7 N -0.355 5.355 8 C 0.371 3.629 9 O -0.401 6.401 10 C -0.336 4.336 11 C -0.075 4.075 12 C -0.145 4.145 13 C -0.050 4.050 14 C -0.202 4.202 15 C -0.028 4.028 16 N -0.168 5.168 17 C -0.186 4.186 18 S 0.449 5.551 19 C -0.185 4.185 20 C 0.018 3.982 21 N -0.315 5.315 22 C -0.454 4.454 23 H 0.081 0.919 24 C -0.226 4.226 25 N -0.552 5.552 26 Si 0.894 3.106 27 H -0.219 1.219 28 H -0.221 1.221 29 H -0.211 1.211 30 H 0.048 0.952 31 H 0.111 0.889 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.232 0.768 36 H 0.177 0.823 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.185 0.815 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.169 0.911 -20.174 23.077 hybrid contribution 2.629 -1.467 -1.566 3.393 sum 13.797 -0.556 -21.739 25.754 Atomic orbital electron populations 1.21892 0.95554 0.98899 1.04251 1.21876 0.97168 0.97438 0.99710 1.21207 0.89414 0.92546 0.92000 0.94559 1.22219 0.95913 0.99546 0.79317 0.88255 1.45958 1.17053 1.57558 1.14975 1.16956 0.82043 0.79347 0.84563 1.90835 1.53773 1.41003 1.54533 1.23958 1.00543 1.09753 0.99371 1.20082 0.96579 0.97946 0.92926 1.19039 0.96736 1.03569 0.95112 1.21298 0.95895 0.94894 0.92887 1.21744 1.00777 1.01071 0.96581 1.22945 0.87760 0.93007 0.99127 1.67272 1.27421 1.19389 1.02735 1.23883 0.97787 1.00569 0.96409 1.84387 1.15382 1.56468 0.98912 1.23181 0.99567 0.97649 0.98060 1.21509 0.85271 0.98677 0.92768 1.44470 1.01966 1.65005 1.20075 1.19595 0.83622 1.49461 0.92693 0.91896 1.25841 1.04027 1.00501 0.92275 1.70765 1.18683 1.29485 1.36280 0.83531 0.74810 0.76131 0.76131 1.21939 1.22086 1.21138 0.95180 0.88919 0.94268 0.94286 0.92480 0.76805 0.82304 0.83874 0.83773 0.81517 0.91407 0.91496 0.93033 0.95144 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.96 37.16 0.33 -2.58 16 2 C -0.12 -2.36 5.48 -26.73 -0.15 -2.51 16 3 C 0.16 3.08 2.99 -66.95 -0.20 2.88 16 4 H 0.04 0.71 7.72 -51.93 -0.40 0.31 16 5 C 0.13 2.38 2.85 -66.10 -0.19 2.19 16 6 H 0.10 1.89 7.26 -51.93 -0.38 1.51 16 7 N -0.71 -10.51 5.17 -53.24 -0.28 -10.78 16 8 C 0.59 8.86 7.79 -12.72 -0.10 8.76 16 9 O -0.52 -9.46 16.36 5.23 0.09 -9.37 16 10 C -0.22 -2.70 6.32 -37.64 -0.24 -2.94 16 11 C -0.04 -0.47 9.80 -40.40 -0.40 -0.87 16 12 C -0.13 -1.35 5.88 -107.09 -0.63 -1.98 16 13 C -0.02 -0.16 10.16 -38.90 -0.40 -0.55 16 14 C -0.18 -1.01 10.01 -40.00 -0.40 -1.41 16 15 C 0.14 1.02 11.18 -17.59 -0.20 0.82 16 16 N -0.46 -4.91 10.39 -11.65 -0.12 -5.03 16 17 C 0.06 0.65 7.66 -16.13 -0.12 0.53 16 18 S 0.18 2.04 22.25 -107.50 -2.39 -0.35 16 19 C -0.15 -2.67 6.76 -24.70 -0.17 -2.84 16 20 C 0.14 3.24 5.56 -2.65 -0.01 3.22 16 21 N -0.59 -13.97 2.92 -162.72 -0.48 -14.44 16 22 C -0.33 -8.54 7.23 -15.06 -0.11 -8.65 16 23 H 0.06 1.66 7.22 -52.48 -0.38 1.28 16 24 C -0.02 -0.64 5.18 -17.43 -0.09 -0.73 16 25 N -0.91 -26.71 13.06 55.49 0.72 -25.98 16 26 Si 1.06 24.68 29.99 -169.99 -5.10 19.59 16 27 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 2.13 5.53 -51.93 -0.29 1.84 16 32 H 0.04 0.72 8.13 -51.93 -0.42 0.30 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.40 5.20 7.41 -40.82 -0.30 4.90 16 36 H 0.16 1.59 7.96 -52.49 -0.42 1.17 16 37 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 39 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.03 0.74 6.73 -51.93 -0.35 0.39 16 44 H 0.27 7.96 6.19 -40.82 -0.25 7.71 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -32.14 372.41 -10.79 -42.93 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.79 Total: 4.50 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -3.06 Total: -6.66 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.15 Total: -56.24 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.10 Total: 19.59 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.39 Total: -0.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.14 -10.79 -42.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087783062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.412 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds