Wall clock time and date at job start Wed Apr 1 2020 04:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.09001 * 109.87419 * 304.64245 * 3 2 1 5 5 C 1.54324 * 110.01018 * 183.54384 * 3 2 1 6 6 H 1.08994 * 110.71818 * 336.85809 * 5 3 2 7 7 N 1.46501 * 110.72009 * 99.95217 * 5 3 2 8 8 C 1.34765 * 120.00096 * 204.99747 * 7 5 3 9 9 O 1.21656 * 120.00088 * 0.02562 * 8 7 5 10 10 C 1.46987 * 120.00075 * 180.02562 * 8 7 5 11 11 C 1.33681 * 124.63717 * 179.72858 * 10 8 7 12 12 C 1.40322 * 115.50236 * 179.79415 * 11 10 8 13 13 C 1.41637 * 129.15035 * 180.15492 * 12 11 10 14 14 C 1.36524 * 118.85896 * 180.33866 * 13 12 11 15 15 C 1.38777 * 119.72755 * 0.02562 * 14 13 12 16 16 N 1.31287 * 121.06860 * 359.95687 * 15 14 13 17 17 C 1.33439 * 121.98221 * 0.08251 * 16 15 14 18 18 S 1.75472 * 124.64062 * 0.02562 * 10 8 7 19 19 C 1.55155 * 102.94142 * 218.31845 * 5 3 2 20 20 C 1.54692 * 101.67753 * 35.33195 * 19 5 3 21 21 N 1.47022 * 109.88407 * 65.65756 * 3 2 1 22 22 C 1.36938 * 125.64637 * 298.48048 * 21 3 2 23 23 H 1.08003 * 120.00303 * 333.98391 * 22 21 3 24 24 C 1.38810 * 120.00262 * 153.99361 * 22 21 3 25 25 N 1.31625 * 119.99681 * 335.06661 * 24 22 21 26 26 Si 1.86797 * 120.00662 * 155.06350 * 24 22 21 27 27 H 1.48497 * 109.46791 * 59.99502 * 26 24 22 28 28 H 1.48505 * 109.46819 * 300.00185 * 26 24 22 29 29 H 1.48489 * 109.47712 * 180.02562 * 26 24 22 30 30 H 1.08999 * 109.46847 * 171.63659 * 1 2 3 31 31 H 1.08998 * 109.46937 * 291.63772 * 1 2 3 32 32 H 1.08996 * 109.47099 * 51.64429 * 1 2 3 33 33 H 1.08995 * 109.46876 * 240.00079 * 2 1 3 34 34 H 1.08997 * 109.46660 * 120.00106 * 2 1 3 35 35 H 0.97001 * 119.99764 * 25.00649 * 7 5 3 36 36 H 1.07995 * 122.24978 * 359.97438 * 11 10 8 37 37 H 1.08000 * 120.57278 * 0.36424 * 13 12 11 38 38 H 1.07999 * 120.14050 * 179.97438 * 14 13 12 39 39 H 1.07989 * 119.46484 * 180.02562 * 15 14 13 40 40 H 1.09002 * 111.00414 * 153.58087 * 19 5 3 41 41 H 1.09007 * 111.00313 * 277.42805 * 19 5 3 42 42 H 1.08998 * 110.39135 * 204.36106 * 20 19 5 43 43 H 1.09000 * 110.23013 * 82.11617 * 20 19 5 44 44 H 0.97001 * 119.99796 * 353.73046 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6142 1.9861 -0.8434 5 6 3.5806 1.4580 -0.0896 6 1 3.9971 0.5164 0.2680 7 7 4.0173 1.7278 -1.4618 8 6 5.2271 1.3056 -1.8792 9 8 5.9565 0.7001 -1.1167 10 6 5.6655 1.5768 -3.2557 11 6 6.8450 1.2065 -3.7644 12 6 7.0633 1.5615 -5.1043 13 6 8.1935 1.3155 -5.9218 14 6 8.1853 1.7663 -7.2104 15 6 7.0794 2.4523 -7.6925 16 7 6.0353 2.6763 -6.9288 17 6 5.9844 2.2615 -5.6616 18 16 4.7152 2.4373 -4.4539 19 6 3.9716 2.6282 0.8511 20 6 2.9011 2.5087 1.9613 21 7 1.6694 2.1039 1.2597 22 6 0.3916 2.3143 1.7047 23 1 -0.4215 2.3868 0.9975 24 6 0.1412 2.4345 3.0647 25 7 0.9608 1.8850 3.9358 26 14 -1.3588 3.3761 3.6588 27 1 -2.5879 2.7382 3.1227 28 1 -1.2820 4.7807 3.1825 29 1 -1.3984 3.3587 5.1430 30 1 -0.3633 -1.0167 -0.1495 31 1 -0.3633 0.3789 0.9552 32 1 -0.3633 0.6377 -0.8058 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.4356 2.2103 -2.0698 36 1 7.5792 0.6677 -3.1840 37 1 9.0469 0.7802 -5.5326 38 1 9.0362 1.5906 -7.8518 39 1 7.0773 2.8067 -8.7126 40 1 4.9740 2.4864 1.2553 41 1 3.8913 3.5862 0.3371 42 1 2.7578 3.4694 2.4558 43 1 3.1926 1.7480 2.6856 44 1 1.6874 1.3205 3.6289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087783062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:13 Heat of formation + Delta-G solvation = 19.439510 kcal Electronic energy + Delta-G solvation = -27124.528476 eV Core-core repulsion = 23360.755911 eV Total energy + Delta-G solvation = -3763.772565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.58289 -41.13242 -39.59298 -36.89349 -35.88687 -34.34628 -33.75074 -33.39855 -31.24141 -30.29288 -28.60843 -26.67958 -25.75696 -25.14611 -23.64455 -22.97984 -21.88861 -21.77161 -21.12940 -19.76010 -19.29646 -18.34453 -17.92932 -17.07578 -16.77918 -16.42895 -16.18155 -16.02479 -15.94573 -15.55034 -15.49925 -15.24326 -14.92443 -14.64927 -14.12800 -14.07968 -14.06196 -13.79670 -13.39628 -13.25992 -12.89986 -12.85586 -12.67210 -12.54141 -12.26182 -12.20711 -11.92266 -11.89197 -11.77725 -11.59334 -11.42177 -11.40135 -11.36586 -10.56588 -10.45051 -10.30842 -9.84443 -9.21831 -8.93358 -8.18169 -5.33301 -0.96259 -0.00755 0.03504 0.61144 0.76870 1.59947 1.67029 1.79366 1.85291 1.89582 2.63460 2.67244 3.24451 3.28187 3.44142 3.55762 3.56997 3.67686 3.71079 3.82356 3.98964 4.05353 4.24320 4.28698 4.35109 4.40125 4.48093 4.52700 4.57311 4.65461 4.77454 4.81312 4.89820 4.95697 4.98393 5.03735 5.09971 5.15046 5.18768 5.26702 5.46464 5.55163 5.63015 5.83094 6.22637 6.39148 6.65276 6.87283 6.95933 7.74170 8.35099 9.08105 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.024428 B = 0.002333 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.939347 B =12000.475869 C =12299.668089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C 0.154 3.846 4 H 0.049 0.951 5 C 0.150 3.850 6 H 0.087 0.913 7 N -0.699 5.699 8 C 0.592 3.408 9 O -0.559 6.559 10 C -0.244 4.244 11 C -0.026 4.026 12 C -0.153 4.153 13 C -0.022 4.022 14 C -0.166 4.166 15 C 0.146 3.854 16 N -0.494 5.494 17 C 0.041 3.959 18 S 0.177 5.823 19 C -0.130 4.130 20 C 0.148 3.852 21 N -0.606 5.606 22 C -0.314 4.314 23 H 0.064 0.936 24 C -0.080 4.080 25 N -0.947 5.947 26 Si 1.111 2.889 27 H -0.274 1.274 28 H -0.281 1.281 29 H -0.297 1.297 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.408 0.592 36 H 0.166 0.834 37 H 0.173 0.827 38 H 0.187 0.813 39 H 0.202 0.798 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.027 0.973 43 H 0.006 0.994 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.302 -0.175 -25.872 30.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C 0.047 3.953 4 H 0.067 0.933 5 C 0.045 3.955 6 H 0.105 0.895 7 N -0.349 5.349 8 C 0.379 3.621 9 O -0.439 6.439 10 C -0.363 4.363 11 C -0.059 4.059 12 C -0.164 4.164 13 C -0.049 4.049 14 C -0.188 4.188 15 C -0.024 4.024 16 N -0.205 5.205 17 C -0.202 4.202 18 S 0.442 5.558 19 C -0.169 4.169 20 C 0.022 3.978 21 N -0.332 5.332 22 C -0.442 4.442 23 H 0.081 0.919 24 C -0.276 4.276 25 N -0.590 5.590 26 Si 0.936 3.064 27 H -0.200 1.200 28 H -0.208 1.208 29 H -0.224 1.224 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.245 0.755 36 H 0.183 0.817 37 H 0.190 0.810 38 H 0.204 0.796 39 H 0.218 0.782 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.045 0.955 43 H 0.024 0.976 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.629 1.090 -24.120 27.248 hybrid contribution 2.327 -1.546 -0.647 2.868 sum 14.957 -0.456 -24.766 28.936 Atomic orbital electron populations 1.21770 0.95512 1.00265 1.02405 1.21813 0.97121 0.96972 0.99865 1.21322 0.90924 0.92678 0.90364 0.93341 1.21807 0.94320 0.98604 0.80782 0.89497 1.45742 1.17503 1.57829 1.13838 1.17221 0.81326 0.78230 0.85356 1.90813 1.54630 1.42587 1.55867 1.23567 1.01814 1.12525 0.98350 1.20281 0.95890 0.96288 0.93444 1.19208 0.97845 1.04381 0.94919 1.21762 0.95582 0.94437 0.93141 1.22229 1.01301 0.98924 0.96338 1.23710 0.87065 0.91592 1.00076 1.67298 1.29419 1.20976 1.02805 1.23966 0.97939 1.01307 0.96971 1.84211 1.15860 1.56671 0.99095 1.23036 0.98468 0.98649 0.96746 1.21351 0.86363 0.96492 0.93581 1.44676 1.01640 1.65828 1.21038 1.19780 0.84653 1.47233 0.92576 0.91874 1.27069 1.06035 1.01439 0.93054 1.70879 1.19786 1.31605 1.36729 0.82897 0.72814 0.75699 0.74969 1.19976 1.20788 1.22386 0.93061 0.92711 0.93123 0.91478 0.94828 0.75549 0.81654 0.80952 0.79555 0.78155 0.90465 0.90249 0.95466 0.97631 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 8.96 71.99 0.65 -4.82 16 2 C -0.12 -4.53 5.48 30.60 0.17 -4.36 16 3 C 0.15 6.05 2.99 45.34 0.14 6.19 16 4 H 0.05 1.83 7.72 -2.39 -0.02 1.81 16 5 C 0.15 5.32 2.85 46.18 0.13 5.45 16 6 H 0.09 3.35 7.26 -2.39 -0.02 3.34 16 7 N -0.70 -20.39 5.17 -440.61 -2.28 -22.67 16 8 C 0.59 17.69 7.79 86.54 0.67 18.37 16 9 O -0.56 -20.22 16.36 -4.21 -0.07 -20.28 16 10 C -0.24 -5.93 6.32 23.53 0.15 -5.78 16 11 C -0.03 -0.55 9.80 21.74 0.21 -0.33 16 12 C -0.15 -2.78 5.88 -21.47 -0.13 -2.91 16 13 C -0.02 -0.23 10.16 22.71 0.23 0.00 16 14 C -0.17 -1.10 10.01 22.00 0.22 -0.88 16 15 C 0.15 1.54 11.18 84.90 0.95 2.49 16 16 N -0.49 -9.57 10.39 -190.76 -1.98 -11.55 16 17 C 0.04 0.88 7.66 84.92 0.65 1.53 16 18 S 0.18 3.84 22.25 -56.49 -1.26 2.58 16 19 C -0.13 -4.81 6.76 31.91 0.22 -4.60 16 20 C 0.15 6.97 5.56 86.78 0.48 7.45 16 21 N -0.61 -29.39 2.92 -668.71 -1.95 -31.35 16 22 C -0.31 -16.75 7.23 84.03 0.61 -16.14 16 23 H 0.06 3.33 7.22 -2.91 -0.02 3.31 16 24 C -0.08 -4.46 5.18 84.86 0.44 -4.03 16 25 N -0.95 -57.87 13.06 21.65 0.28 -57.59 16 26 Si 1.11 50.71 29.99 68.60 2.06 52.77 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 28 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 29 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 2.53 5.53 -2.39 -0.01 2.52 16 32 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.41 10.29 7.41 -92.71 -0.69 9.61 16 36 H 0.17 3.11 7.96 -2.91 -0.02 3.09 16 37 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.19 -0.32 8.06 -2.91 -0.02 -0.35 16 39 H 0.20 0.55 8.06 -2.92 -0.02 0.52 16 40 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 42 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.01 0.30 6.73 -2.39 -0.02 0.29 16 44 H 0.25 15.88 6.19 -92.71 -0.57 15.31 16 Total: -1.00 -73.22 372.41 1.13 -72.09 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.54 Total: 18.36 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.79 Total: -2.37 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -5.93 Total: -123.15 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.07 Total: -20.28 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.06 Total: 52.77 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.26 Total: 2.58 kcal Total: -73.22 1.13 -72.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087783062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.530 kcal (2) G-P(sol) polarization free energy of solvation -73.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds