Wall clock time and date at job start Wed Apr 1 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99695 * 2 1 4 4 H 1.48504 * 109.47266 * 240.27884 * 3 2 1 5 5 H 1.48505 * 109.47149 * 0.27471 * 3 2 1 6 6 H 1.48495 * 109.47090 * 120.27581 * 3 2 1 7 7 C 1.38812 * 120.00079 * 180.27920 * 2 1 3 8 8 H 1.07995 * 119.99992 * 155.55214 * 7 2 1 9 9 N 1.36938 * 119.99969 * 335.54189 * 7 2 1 10 10 C 1.44326 * 116.35438 * 332.70648 * 9 7 2 11 11 C 1.51605 * 113.11097 * 187.25698 * 10 9 7 12 12 C 1.52897 * 111.55639 * 320.91715 * 11 10 9 13 13 H 1.08994 * 112.87863 * 293.26168 * 12 11 10 14 14 C 1.55956 * 106.47962 * 168.38388 * 12 11 10 15 15 N 1.47759 * 104.12475 * 286.22191 * 14 12 11 16 16 C 1.34778 * 125.81937 * 154.14478 * 15 14 12 17 17 O 1.21737 * 119.99884 * 0.02562 * 16 15 14 18 18 C 1.46414 * 119.99883 * 180.02562 * 16 15 14 19 19 C 1.35781 * 124.95646 * 179.72214 * 18 16 15 20 20 C 1.38867 * 115.18299 * 179.82486 * 19 18 16 21 21 N 1.39743 * 139.91349 * 180.09004 * 20 19 18 22 22 H 0.96999 * 125.63896 * 0.32998 * 21 20 19 23 23 C 1.36218 * 108.73631 * 180.35231 * 21 20 19 24 24 C 1.34508 * 109.29507 * 359.97438 * 23 21 20 25 25 C 1.38241 * 113.39253 * 0.45618 * 20 19 18 26 26 S 1.75609 * 124.96005 * 0.02562 * 18 16 15 27 27 C 1.47618 * 108.36153 * 334.10949 * 15 14 12 28 28 C 1.53569 * 106.34055 * 0.63781 * 27 15 14 29 29 H 1.09002 * 108.70754 * 269.67495 * 28 27 15 30 30 C 1.43997 * 116.35198 * 152.45027 * 9 7 2 31 31 H 0.96995 * 120.00342 * 359.72664 * 1 2 3 32 32 H 1.08996 * 108.75641 * 308.19162 * 10 9 7 33 33 H 1.08992 * 108.75443 * 66.43917 * 10 9 7 34 34 H 1.08992 * 109.06717 * 81.45941 * 11 10 9 35 35 H 1.09007 * 109.06123 * 200.38992 * 11 10 9 36 36 H 1.09003 * 110.50402 * 44.88726 * 14 12 11 37 37 H 1.09006 * 110.50093 * 167.56250 * 14 12 11 38 38 H 1.08003 * 122.41004 * 0.02562 * 19 18 16 39 39 H 1.07994 * 125.35313 * 180.02562 * 23 21 20 40 40 H 1.08004 * 126.07780 * 180.02562 * 24 23 21 41 41 H 1.08997 * 110.07611 * 119.85383 * 27 15 14 42 42 H 1.08993 * 110.08240 * 241.35888 * 27 15 14 43 43 H 1.09001 * 108.15688 * 304.21858 * 30 9 7 44 44 H 1.09001 * 108.15671 * 60.78247 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0988 1.6995 -1.2159 5 1 1.2851 2.7465 0.0067 6 1 3.1089 1.6935 1.2091 7 6 2.0103 -1.2021 -0.0059 8 1 3.0176 -1.2421 -0.3931 9 7 1.4178 -2.3372 0.4796 10 6 0.4026 -2.1489 1.4880 11 6 -0.0790 -3.4506 2.0980 12 6 -0.1987 -4.5536 1.0459 13 1 -0.9827 -4.3581 0.3143 14 6 -0.4031 -5.8886 1.8258 15 7 0.9296 -6.1831 2.3920 16 6 1.1726 -6.9127 3.4988 17 8 0.2470 -7.3954 4.1250 18 6 2.5500 -7.1247 3.9479 19 6 2.9089 -7.8355 5.0477 20 6 4.2754 -7.9102 5.2830 21 7 5.1741 -8.4667 6.1971 22 1 4.9354 -9.0026 6.9695 23 6 6.4408 -8.1317 5.8246 24 6 6.3925 -7.3832 4.7081 25 6 5.0315 -7.2295 4.3471 26 16 3.9784 -6.4906 3.1471 27 6 1.9494 -5.5426 1.5382 28 6 1.1846 -4.8199 0.4197 29 1 1.0627 -5.5048 -0.4195 30 6 1.8735 -3.5844 -0.0774 31 1 -0.4850 0.8400 0.0040 32 1 0.8079 -1.5195 2.2802 33 1 -0.4488 -1.6390 1.0372 34 1 0.6268 -3.7664 2.8661 35 1 -1.0544 -3.2893 2.5571 36 1 -1.1357 -5.7573 2.6221 37 1 -0.7137 -6.6833 1.1474 38 1 2.1839 -8.3115 5.6914 39 1 7.3422 -8.4222 6.3436 40 1 7.2407 -6.9723 4.1807 41 1 2.5276 -4.8250 2.1203 42 1 2.6100 -6.2982 1.1133 43 1 1.7537 -3.5370 -1.1597 44 1 2.9376 -3.6835 0.1371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088184342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:51 Heat of formation + Delta-G solvation = 74.508975 kcal Electronic energy + Delta-G solvation = -27963.341012 eV Core-core repulsion = 24201.956439 eV Total energy + Delta-G solvation = -3761.384573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.32202 -40.36358 -38.37130 -35.67417 -35.06705 -32.62220 -31.59772 -31.07766 -30.38210 -28.77184 -27.54233 -25.70407 -24.33316 -23.11410 -22.06859 -21.78634 -21.23714 -20.73354 -18.74963 -18.68152 -17.80437 -17.09197 -16.78034 -15.92814 -15.54269 -15.43995 -14.91243 -14.84217 -14.37177 -14.25258 -13.89911 -13.74315 -13.67301 -13.24384 -13.08837 -13.02922 -12.72354 -12.43863 -12.32187 -12.02579 -11.76934 -11.58449 -11.29167 -11.11096 -10.97949 -10.72745 -10.43578 -10.25467 -10.17168 -10.05679 -9.82284 -9.72613 -9.62591 -9.53863 -8.63083 -8.44711 -8.26054 -7.72007 -6.59738 -5.60186 -3.25893 0.45791 1.41736 1.95489 2.26187 2.49261 2.70359 3.10093 3.24060 3.40508 3.46691 3.49307 4.40756 4.52565 4.70789 4.73263 4.78963 4.89987 5.06947 5.12629 5.30136 5.33438 5.39160 5.55017 5.56477 5.61030 5.69497 5.76716 5.84038 5.84428 5.94429 5.99276 6.17723 6.25801 6.31882 6.34063 6.56254 6.56515 6.61311 6.70551 6.79892 6.86597 7.19561 7.34185 7.52021 7.83505 7.95686 8.13309 8.55390 9.30928 10.00674 10.30113 11.25272 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.003194 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.312631 B = 8765.314280 C =10104.839932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.007 3.993 3 Si 0.898 3.102 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.269 4.269 8 H 0.065 0.935 9 N -0.585 5.585 10 C 0.156 3.844 11 C -0.122 4.122 12 C -0.081 4.081 13 H 0.104 0.896 14 C 0.108 3.892 15 N -0.608 5.608 16 C 0.606 3.394 17 O -0.540 6.540 18 C -0.234 4.234 19 C -0.035 4.035 20 C 0.021 3.979 21 N -0.560 5.560 22 H 0.418 0.582 23 C 0.054 3.946 24 C -0.171 4.171 25 C -0.205 4.205 26 S 0.195 5.805 27 C 0.095 3.905 28 C -0.092 4.092 29 H 0.076 0.924 30 C 0.175 3.825 31 H 0.253 0.747 32 H 0.017 0.983 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.146 0.854 39 H 0.176 0.824 40 H 0.146 0.854 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.026 0.974 44 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.805 -17.777 8.972 21.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.193 4.193 3 Si 0.728 3.272 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.399 4.399 8 H 0.083 0.917 9 N -0.310 5.310 10 C 0.031 3.969 11 C -0.160 4.160 12 C -0.101 4.101 13 H 0.122 0.878 14 C -0.014 4.014 15 N -0.341 5.341 16 C 0.394 3.606 17 O -0.420 6.420 18 C -0.355 4.355 19 C -0.072 4.072 20 C -0.092 4.092 21 N -0.162 5.162 22 H 0.255 0.745 23 C -0.079 4.079 24 C -0.201 4.201 25 C -0.326 4.326 26 S 0.460 5.540 27 C -0.029 4.029 28 C -0.112 4.112 29 H 0.094 0.906 30 C 0.049 3.951 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.164 0.836 39 H 0.194 0.806 40 H 0.164 0.836 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.044 0.956 44 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 8.365 -17.211 8.213 20.824 hybrid contribution 0.358 -0.232 1.758 1.809 sum 8.723 -17.443 9.971 21.904 Atomic orbital electron populations 1.69976 1.05478 1.25477 1.52344 1.24958 0.94956 0.98476 1.00910 0.86430 0.79163 0.83425 0.78183 1.20833 1.21723 1.21097 1.19088 0.96011 0.86420 1.38367 0.91693 1.42673 1.44768 1.01055 1.42462 1.20255 0.94561 0.91989 0.90082 1.21616 1.00566 0.96715 0.97108 1.22264 0.96953 0.93289 0.97561 0.87751 1.22724 0.84073 0.97091 0.97469 1.48479 1.09380 1.50783 1.25428 1.16409 0.86522 0.78234 0.79391 1.90817 1.44612 1.50985 1.55620 1.23674 0.97368 1.11033 1.03404 1.19147 0.92008 0.99156 0.96902 1.17991 0.91131 1.05213 0.94834 1.41891 1.04761 1.45149 1.24364 0.74493 1.21854 0.87025 1.00997 0.98034 1.20160 0.93768 1.06733 0.99425 1.23778 0.98882 1.07340 1.02629 1.84486 0.92288 1.52154 1.25103 1.22326 0.91043 0.96770 0.92803 1.21442 0.95419 0.98146 0.96144 0.90556 1.19361 0.95410 0.84492 0.95884 0.93651 0.96481 0.90080 0.93407 0.92433 0.90116 0.91416 0.83589 0.80649 0.83578 0.89851 0.90747 0.95602 0.96735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 10.89 55.49 0.60 -24.61 16 2 C 0.01 0.19 4.95 -17.43 -0.09 0.10 16 3 Si 0.90 21.50 29.62 -169.99 -5.03 16.46 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.27 -7.25 9.26 -15.06 -0.14 -7.39 16 8 H 0.07 1.73 7.94 -52.49 -0.42 1.31 16 9 N -0.59 -14.17 3.23 -179.60 -0.58 -14.75 16 10 C 0.16 3.66 5.12 -5.91 -0.03 3.63 16 11 C -0.12 -2.28 4.97 -27.49 -0.14 -2.42 16 12 C -0.08 -1.32 3.78 -88.49 -0.33 -1.65 16 13 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 14 C 0.11 1.59 6.23 -1.77 -0.01 1.57 16 15 N -0.61 -9.39 2.81 -171.20 -0.48 -9.87 16 16 C 0.61 9.97 7.82 -12.97 -0.10 9.87 16 17 O -0.54 -10.20 17.03 5.16 0.09 -10.11 16 18 C -0.23 -3.41 6.32 -37.17 -0.24 -3.64 16 19 C -0.04 -0.46 9.88 -40.23 -0.40 -0.86 16 20 C 0.02 0.25 7.67 -84.02 -0.64 -0.39 16 21 N -0.56 -4.61 6.21 -10.90 -0.07 -4.67 16 22 H 0.42 2.07 8.96 -40.82 -0.37 1.70 16 23 C 0.05 0.40 11.85 -16.92 -0.20 0.20 16 24 C -0.17 -1.69 10.85 -39.60 -0.43 -2.12 16 25 C -0.20 -2.55 7.31 -38.28 -0.28 -2.83 16 26 S 0.19 2.55 18.55 -107.50 -1.99 0.55 16 27 C 0.09 1.39 3.82 -3.13 -0.01 1.38 16 28 C -0.09 -1.46 2.68 -91.24 -0.24 -1.71 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 30 C 0.17 3.47 5.68 -6.89 -0.04 3.43 16 31 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.08 2.16 5.74 -51.93 -0.30 1.86 16 34 H 0.05 0.91 6.77 -51.93 -0.35 0.56 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.22 7.92 -51.93 -0.41 0.81 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.15 1.76 8.00 -52.48 -0.42 1.34 16 39 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 41 H 0.08 1.34 6.56 -51.93 -0.34 1.00 16 42 H 0.07 0.97 6.96 -51.93 -0.36 0.60 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.01 0.29 7.78 -51.93 -0.40 -0.11 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -32.75 357.73 -11.28 -44.03 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.89 Total: 0.40 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -3.32 Total: -2.82 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.52 Total: -53.90 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.46 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.99 Total: 0.55 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.75 -11.28 -44.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088184342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.534 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds