Wall clock time and date at job start Wed Apr 1 2020 02:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99695 * 2 1 4 4 H 1.48504 * 109.47266 * 240.27884 * 3 2 1 5 5 H 1.48505 * 109.47149 * 0.27471 * 3 2 1 6 6 H 1.48495 * 109.47090 * 120.27581 * 3 2 1 7 7 C 1.38812 * 120.00079 * 180.27920 * 2 1 3 8 8 H 1.07995 * 119.99992 * 155.55214 * 7 2 1 9 9 N 1.36938 * 119.99969 * 335.54189 * 7 2 1 10 10 C 1.44326 * 116.35438 * 332.70648 * 9 7 2 11 11 C 1.51605 * 113.11097 * 187.25698 * 10 9 7 12 12 C 1.52897 * 111.55639 * 320.91715 * 11 10 9 13 13 H 1.08994 * 112.87863 * 293.26168 * 12 11 10 14 14 C 1.55956 * 106.47962 * 168.38388 * 12 11 10 15 15 N 1.47759 * 104.12475 * 286.22191 * 14 12 11 16 16 C 1.34778 * 125.81937 * 154.14478 * 15 14 12 17 17 O 1.21737 * 119.99884 * 0.02562 * 16 15 14 18 18 C 1.46414 * 119.99883 * 180.02562 * 16 15 14 19 19 C 1.35781 * 124.95646 * 179.72214 * 18 16 15 20 20 C 1.38867 * 115.18299 * 179.82486 * 19 18 16 21 21 N 1.39743 * 139.91349 * 180.09004 * 20 19 18 22 22 H 0.96999 * 125.63896 * 0.32998 * 21 20 19 23 23 C 1.36218 * 108.73631 * 180.35231 * 21 20 19 24 24 C 1.34508 * 109.29507 * 359.97438 * 23 21 20 25 25 C 1.38241 * 113.39253 * 0.45618 * 20 19 18 26 26 S 1.75609 * 124.96005 * 0.02562 * 18 16 15 27 27 C 1.47618 * 108.36153 * 334.10949 * 15 14 12 28 28 C 1.53569 * 106.34055 * 0.63781 * 27 15 14 29 29 H 1.09002 * 108.70754 * 269.67495 * 28 27 15 30 30 C 1.43997 * 116.35198 * 152.45027 * 9 7 2 31 31 H 0.96995 * 120.00342 * 359.72664 * 1 2 3 32 32 H 1.08996 * 108.75641 * 308.19162 * 10 9 7 33 33 H 1.08992 * 108.75443 * 66.43917 * 10 9 7 34 34 H 1.08992 * 109.06717 * 81.45941 * 11 10 9 35 35 H 1.09007 * 109.06123 * 200.38992 * 11 10 9 36 36 H 1.09003 * 110.50402 * 44.88726 * 14 12 11 37 37 H 1.09006 * 110.50093 * 167.56250 * 14 12 11 38 38 H 1.08003 * 122.41004 * 0.02562 * 19 18 16 39 39 H 1.07994 * 125.35313 * 180.02562 * 23 21 20 40 40 H 1.08004 * 126.07780 * 180.02562 * 24 23 21 41 41 H 1.08997 * 110.07611 * 119.85383 * 27 15 14 42 42 H 1.08993 * 110.08240 * 241.35888 * 27 15 14 43 43 H 1.09001 * 108.15688 * 304.21858 * 30 9 7 44 44 H 1.09001 * 108.15671 * 60.78247 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0988 1.6995 -1.2159 5 1 1.2851 2.7465 0.0067 6 1 3.1089 1.6935 1.2091 7 6 2.0103 -1.2021 -0.0059 8 1 3.0176 -1.2421 -0.3931 9 7 1.4178 -2.3372 0.4796 10 6 0.4026 -2.1489 1.4880 11 6 -0.0790 -3.4506 2.0980 12 6 -0.1987 -4.5536 1.0459 13 1 -0.9827 -4.3581 0.3143 14 6 -0.4031 -5.8886 1.8258 15 7 0.9296 -6.1831 2.3920 16 6 1.1726 -6.9127 3.4988 17 8 0.2470 -7.3954 4.1250 18 6 2.5500 -7.1247 3.9479 19 6 2.9089 -7.8355 5.0477 20 6 4.2754 -7.9102 5.2830 21 7 5.1741 -8.4667 6.1971 22 1 4.9354 -9.0026 6.9695 23 6 6.4408 -8.1317 5.8246 24 6 6.3925 -7.3832 4.7081 25 6 5.0315 -7.2295 4.3471 26 16 3.9784 -6.4906 3.1471 27 6 1.9494 -5.5426 1.5382 28 6 1.1846 -4.8199 0.4197 29 1 1.0627 -5.5048 -0.4195 30 6 1.8735 -3.5844 -0.0774 31 1 -0.4850 0.8400 0.0040 32 1 0.8079 -1.5195 2.2802 33 1 -0.4488 -1.6390 1.0372 34 1 0.6268 -3.7664 2.8661 35 1 -1.0544 -3.2893 2.5571 36 1 -1.1357 -5.7573 2.6221 37 1 -0.7137 -6.6833 1.1474 38 1 2.1839 -8.3115 5.6914 39 1 7.3422 -8.4222 6.3436 40 1 7.2407 -6.9723 4.1807 41 1 2.5276 -4.8250 2.1203 42 1 2.6100 -6.2982 1.1133 43 1 1.7537 -3.5370 -1.1597 44 1 2.9376 -3.6835 0.1371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088184342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:50 Heat of formation + Delta-G solvation = 54.778296 kcal Electronic energy + Delta-G solvation = -27964.196599 eV Core-core repulsion = 24201.956439 eV Total energy + Delta-G solvation = -3762.240160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.10191 -41.65649 -39.73828 -37.32496 -36.02916 -34.26514 -33.16807 -32.11200 -31.82303 -30.00478 -28.70109 -27.25023 -25.76100 -24.48478 -23.54659 -23.09987 -22.25243 -21.58524 -19.89966 -19.68243 -19.23131 -18.83152 -17.83400 -17.30909 -16.85514 -16.62620 -16.45375 -15.93744 -15.70017 -15.55282 -15.35504 -15.08709 -14.80798 -14.57501 -14.48129 -14.09295 -14.02251 -13.77086 -13.55223 -13.29024 -13.00859 -12.92869 -12.88525 -12.54962 -12.50576 -12.29222 -12.10548 -12.01218 -11.58281 -11.44392 -11.37023 -11.21031 -11.13968 -10.66174 -10.51133 -9.81811 -9.13908 -8.63041 -8.58745 -7.65511 -5.36168 -0.50654 0.47153 1.02392 1.35704 1.47645 1.51245 1.57353 1.70953 1.73735 2.10876 2.22786 2.53844 3.24303 3.27839 3.45394 3.68821 3.75739 3.83845 3.96802 4.14529 4.17245 4.21859 4.23366 4.46302 4.47528 4.55970 4.60041 4.62459 4.71842 4.79987 4.86741 4.96017 4.99047 5.03240 5.06053 5.09118 5.19341 5.27409 5.34642 5.43400 5.57056 5.72105 5.80390 5.96578 6.30229 6.47739 6.62914 6.91333 7.25071 8.08082 8.27080 9.15365 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.003194 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.312631 B = 8765.314280 C =10104.839932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.042 4.042 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.284 1.284 7 C -0.283 4.283 8 H 0.065 0.935 9 N -0.597 5.597 10 C 0.166 3.834 11 C -0.111 4.111 12 C -0.078 4.078 13 H 0.110 0.890 14 C 0.115 3.885 15 N -0.610 5.610 16 C 0.604 3.396 17 O -0.574 6.574 18 C -0.269 4.269 19 C -0.023 4.023 20 C -0.006 4.006 21 N -0.547 5.547 22 H 0.435 0.565 23 C 0.091 3.909 24 C -0.203 4.203 25 C -0.214 4.214 26 S 0.181 5.819 27 C 0.104 3.896 28 C -0.089 4.089 29 H 0.108 0.892 30 C 0.172 3.828 31 H 0.249 0.751 32 H -0.017 1.017 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.150 0.850 39 H 0.227 0.773 40 H 0.161 0.839 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.020 0.980 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.047 -19.837 9.793 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.240 4.240 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.211 1.211 7 C -0.414 4.414 8 H 0.083 0.917 9 N -0.321 5.321 10 C 0.041 3.959 11 C -0.149 4.149 12 C -0.097 4.097 13 H 0.128 0.872 14 C -0.006 4.006 15 N -0.341 5.341 16 C 0.395 3.605 17 O -0.457 6.457 18 C -0.389 4.389 19 C -0.060 4.060 20 C -0.118 4.118 21 N -0.150 5.150 22 H 0.275 0.725 23 C -0.044 4.044 24 C -0.233 4.233 25 C -0.336 4.336 26 S 0.445 5.555 27 C -0.020 4.020 28 C -0.108 4.108 29 H 0.126 0.874 30 C 0.047 3.953 31 H 0.059 0.941 32 H 0.001 0.999 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.168 0.832 39 H 0.243 0.757 40 H 0.178 0.822 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.038 0.962 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 10.607 -19.294 9.025 23.796 hybrid contribution -0.146 0.350 1.609 1.653 sum 10.461 -18.944 10.634 24.112 Atomic orbital electron populations 1.70130 1.06653 1.25712 1.53598 1.25667 0.95695 1.01309 1.01285 0.85492 0.77922 0.79734 0.78284 1.19758 1.21978 1.21086 1.19416 0.96238 0.87833 1.37899 0.91735 1.42898 1.44556 1.02054 1.42587 1.19967 0.93153 0.93841 0.88934 1.21452 1.00550 0.95323 0.97551 1.22213 0.97439 0.93017 0.97026 0.87214 1.22696 0.83785 0.96690 0.97458 1.48507 1.09735 1.50500 1.25381 1.16666 0.87047 0.77734 0.79085 1.90781 1.45768 1.52561 1.56596 1.23495 0.96800 1.13590 1.05022 1.19297 0.92935 0.97695 0.96066 1.17964 0.90858 1.06728 0.96259 1.42021 1.04510 1.44334 1.24088 0.72473 1.22674 0.87831 0.97560 0.96348 1.20567 0.93068 1.08554 1.01064 1.24109 1.00273 1.06978 1.02264 1.84299 0.92331 1.52854 1.25979 1.22229 0.90820 0.96879 0.92026 1.21380 0.94831 0.96918 0.97652 0.87396 1.19464 0.96059 0.84422 0.95392 0.94116 0.99880 0.93086 0.93865 0.91547 0.90665 0.88878 0.83231 0.75666 0.82175 0.91427 0.88601 0.96227 0.96093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.53 10.89 21.65 0.24 -53.29 16 2 C -0.04 -2.37 4.95 84.86 0.42 -1.95 16 3 Si 0.96 44.95 29.62 68.60 2.03 46.98 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.28 -15.57 9.26 84.03 0.78 -14.79 16 8 H 0.06 3.47 7.94 -2.91 -0.02 3.45 16 9 N -0.60 -29.51 3.23 -722.12 -2.33 -31.84 16 10 C 0.17 8.12 5.12 86.33 0.44 8.57 16 11 C -0.11 -4.21 4.97 30.10 0.15 -4.07 16 12 C -0.08 -2.44 3.78 -9.41 -0.04 -2.48 16 13 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 14 C 0.12 3.22 6.23 87.16 0.54 3.77 16 15 N -0.61 -18.41 2.81 -813.74 -2.28 -20.69 16 16 C 0.60 19.92 7.82 86.37 0.68 20.60 16 17 O -0.57 -21.87 17.03 -4.47 -0.08 -21.94 16 18 C -0.27 -7.83 6.32 23.83 0.15 -7.68 16 19 C -0.02 -0.59 9.88 21.85 0.22 -0.37 16 20 C -0.01 -0.12 7.67 38.03 0.29 0.17 16 21 N -0.55 -7.13 6.21 -188.39 -1.17 -8.30 16 22 H 0.43 2.71 8.96 -92.71 -0.83 1.88 16 23 C 0.09 0.93 11.85 83.16 0.99 1.92 16 24 C -0.20 -3.44 10.85 22.26 0.24 -3.19 16 25 C -0.21 -5.03 7.31 23.11 0.17 -4.86 16 26 S 0.18 4.68 18.55 -56.49 -1.05 3.63 16 27 C 0.10 2.97 3.82 86.36 0.33 3.30 16 28 C -0.09 -2.70 2.68 -11.19 -0.03 -2.73 16 29 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 30 C 0.17 6.78 5.68 85.86 0.49 7.27 16 31 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 32 H -0.02 -0.92 8.12 -2.39 -0.02 -0.94 16 33 H 0.05 2.85 5.74 -2.39 -0.01 2.84 16 34 H 0.04 1.68 6.77 -2.39 -0.02 1.66 16 35 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.07 2.22 7.92 -2.39 -0.02 2.20 16 37 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.15 3.57 8.00 -2.91 -0.02 3.55 16 39 H 0.23 0.00 8.06 -2.91 -0.02 -0.03 16 40 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.07 2.18 6.56 -2.39 -0.02 2.16 16 42 H 0.10 2.34 6.96 -2.39 -0.02 2.33 16 43 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.02 0.81 7.78 -2.39 -0.02 0.80 16 Total: -1.00 -73.78 357.73 1.38 -72.39 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.21 Total: 9.60 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.82 Total: 3.48 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -5.55 Total: -114.13 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.08 Total: -21.94 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.05 Total: 3.63 kcal Total: -73.78 1.38 -72.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088184342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.170 kcal (2) G-P(sol) polarization free energy of solvation -73.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds