Wall clock time and date at job start Wed Apr 1 2020 03:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30005 * 127.33357 * 2 1 4 4 O 1.20655 * 112.30430 * 180.02562 * 3 2 1 5 5 C 1.33493 * 113.15700 * 359.75806 * 4 3 2 6 6 C 1.50692 * 126.83429 * 180.30252 * 5 4 3 7 7 F 1.39898 * 109.47138 * 30.10456 * 6 5 4 8 8 F 1.39898 * 109.47587 * 150.10184 * 6 5 4 9 9 C 1.37363 * 106.33714 * 0.39067 * 5 4 3 10 10 C 1.47398 * 128.56359 * 179.91837 * 9 5 4 11 11 O 1.21614 * 119.99554 * 269.66878 * 10 9 5 12 12 N 1.34775 * 120.00635 * 89.67098 * 10 9 5 13 13 C 1.46491 * 120.00381 * 179.72646 * 12 10 9 14 14 H 1.09000 * 109.45813 * 324.99816 * 13 12 10 15 15 C 1.53042 * 109.46330 * 84.97042 * 13 12 10 16 16 C 1.53189 * 109.31210 * 181.38427 * 15 13 12 17 17 N 1.46920 * 108.77904 * 305.36778 * 16 15 13 18 18 C 1.36947 * 120.63018 * 233.62910 * 17 16 15 19 19 H 1.07997 * 119.99486 * 151.82155 * 18 17 16 20 20 C 1.38808 * 119.99580 * 331.82825 * 18 17 16 21 21 N 1.31614 * 120.00703 * 343.06387 * 20 18 17 22 22 Si 1.86805 * 119.99617 * 163.06878 * 20 18 17 23 23 H 1.48504 * 109.47267 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47210 * 119.99854 * 22 20 18 25 25 H 1.48500 * 109.47070 * 239.99728 * 22 20 18 26 26 C 1.46919 * 118.74262 * 53.60956 * 17 16 15 27 27 C 1.53045 * 109.46003 * 205.02749 * 13 12 10 28 28 H 1.09000 * 109.49549 * 298.55998 * 27 13 12 29 29 O 1.42900 * 109.49776 * 58.66089 * 27 13 12 30 30 H 1.08998 * 109.47140 * 269.99381 * 1 2 3 31 31 H 1.08994 * 109.47484 * 29.99674 * 1 2 3 32 32 H 1.09006 * 109.47095 * 149.99861 * 1 2 3 33 33 H 1.09002 * 109.47483 * 270.10257 * 6 5 4 34 34 H 0.96999 * 119.99488 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.49606 * 301.33811 * 15 13 12 36 36 H 1.08996 * 109.49477 * 61.40184 * 15 13 12 37 37 H 1.09005 * 109.58755 * 65.15571 * 16 15 13 38 38 H 1.09004 * 109.58469 * 185.57469 * 16 15 13 39 39 H 0.96996 * 120.00502 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.59085 * 66.17648 * 26 17 16 41 41 H 1.08996 * 109.59207 * 186.46548 * 26 17 16 42 42 H 0.96700 * 113.99722 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7208 -0.0005 5 6 3.6495 -0.6007 0.0043 6 6 4.9712 -1.3245 0.0115 7 9 5.9258 -0.5456 0.6743 8 9 4.8286 -2.5494 0.6721 9 6 2.3992 -1.1696 -0.0008 10 6 2.0402 -2.5992 -0.0002 11 8 1.8911 -3.1890 -1.0533 12 7 1.8770 -3.2527 1.1671 13 6 1.5143 -4.6720 1.1676 14 1 0.8506 -4.8774 0.3277 15 6 2.7803 -5.5219 1.0367 16 6 2.3943 -7.0040 1.0027 17 7 1.5829 -7.3087 2.1891 18 6 1.9304 -8.3344 3.0273 19 1 1.6597 -8.2932 4.0720 20 6 2.6306 -9.4267 2.5342 21 7 2.6740 -9.6501 1.2378 22 14 3.5112 -10.5801 3.7106 23 1 3.3107 -10.1121 5.1056 24 1 2.9609 -11.9515 3.5641 25 1 4.9627 -10.5931 3.3972 26 6 0.3920 -6.4919 2.4594 27 6 0.8007 -5.0155 2.4772 28 1 1.4727 -4.8339 3.3160 29 8 -0.3647 -4.1998 2.6135 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3634 0.8899 -0.5137 32 1 -0.3633 -0.8900 -0.5139 33 1 5.2947 -1.5006 -1.0144 34 1 1.9955 -2.7821 2.0070 35 1 3.3005 -5.2602 0.1152 36 1 3.4336 -5.3350 1.8889 37 1 1.8163 -7.2105 0.1019 38 1 3.2958 -7.6166 1.0093 39 1 3.1630 -10.4136 0.8933 40 1 -0.3493 -6.6565 1.6774 41 1 -0.0290 -6.7682 3.4260 42 1 -0.8675 -4.3645 3.4230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090353999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:57 Heat of formation + Delta-G solvation = -96.613318 kcal Electronic energy + Delta-G solvation = -31585.649842 eV Core-core repulsion = 26819.862448 eV Total energy + Delta-G solvation = -4765.787394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.133 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.50749 -47.52614 -45.33100 -39.86723 -38.02879 -35.46814 -34.97128 -34.43773 -33.34478 -31.95247 -30.10405 -29.16549 -28.65213 -27.33938 -25.58016 -24.31985 -22.46821 -21.95643 -21.17561 -20.45830 -19.69090 -18.63557 -18.52994 -17.60293 -17.49187 -17.47635 -17.01636 -16.60888 -16.07106 -15.83584 -14.89992 -14.60780 -14.34609 -14.29647 -13.96935 -13.84988 -13.80560 -13.70586 -13.61490 -13.42514 -13.21600 -13.08812 -12.83058 -12.34506 -12.17292 -11.96568 -11.71323 -11.62795 -11.16429 -10.92466 -10.80109 -10.40127 -10.38745 -10.29112 -10.26614 -10.03735 -9.96411 -9.79972 -9.54880 -8.90336 -8.51346 -6.81040 -5.88471 -3.33195 0.62462 1.48019 1.94107 2.32666 3.04296 3.26806 3.32213 3.40268 3.41920 3.57622 3.73875 4.16250 4.25984 4.29635 4.35979 4.47167 4.72330 4.76663 5.13470 5.17214 5.22200 5.28746 5.29724 5.42951 5.47559 5.69792 5.70220 5.90682 6.03249 6.19005 6.41912 6.45144 6.61334 6.71255 6.73010 7.24521 7.48135 7.57239 7.69139 7.70047 7.84087 8.12868 8.34109 9.09539 9.71711 10.27194 11.20120 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.003203 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.728276 B = 8739.065635 C = 9843.875497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.057 3.943 3 N -0.341 5.341 4 O 0.124 5.876 5 C -0.079 4.079 6 C 0.364 3.636 7 F -0.183 7.183 8 F -0.169 7.169 9 C -0.190 4.190 10 C 0.591 3.409 11 O -0.520 6.520 12 N -0.694 5.694 13 C 0.163 3.837 14 H 0.091 0.909 15 C -0.146 4.146 16 C 0.171 3.829 17 N -0.588 5.588 18 C -0.261 4.261 19 H 0.067 0.933 20 C 0.007 3.993 21 N -0.898 5.898 22 Si 0.904 3.096 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.288 1.288 26 C 0.121 3.879 27 C 0.080 3.920 28 H 0.058 0.942 29 O -0.572 6.572 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.150 0.850 34 H 0.399 0.601 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.024 0.976 38 H 0.094 0.906 39 H 0.255 0.745 40 H 0.029 0.971 41 H 0.061 0.939 42 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 19.204 -0.873 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 N -0.044 5.044 4 O 0.057 5.943 5 C -0.144 4.144 6 C 0.309 3.691 7 F -0.164 7.164 8 F -0.150 7.150 9 C -0.197 4.197 10 C 0.374 3.626 11 O -0.397 6.397 12 N -0.342 5.342 13 C 0.060 3.940 14 H 0.109 0.891 15 C -0.186 4.186 16 C 0.045 3.955 17 N -0.312 5.312 18 C -0.390 4.390 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.542 5.542 22 Si 0.733 3.267 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.214 1.214 26 C -0.006 4.006 27 C 0.019 3.981 28 H 0.076 0.924 29 O -0.376 6.376 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.167 0.833 34 H 0.233 0.767 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.112 0.888 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.180 20.138 -2.246 20.264 hybrid contribution 0.322 -1.362 1.600 2.126 sum 0.503 18.776 -0.646 18.794 Atomic orbital electron populations 1.20300 0.84305 1.04718 1.04360 1.24878 0.99007 0.85761 1.00750 1.73616 0.88950 1.23094 1.18717 1.84599 1.21629 1.20736 1.67288 1.25105 0.97139 0.85814 1.06302 1.19557 0.79782 0.74945 0.94816 1.93083 1.64776 1.74993 1.83546 1.93165 1.95607 1.42748 1.83498 1.22274 0.91783 0.96576 1.09090 1.16751 0.77871 0.83179 0.84837 1.90871 1.50386 1.67333 1.31073 1.46019 1.68698 1.12047 1.07477 1.21135 0.96921 0.77864 0.98084 0.89129 1.22609 0.95594 0.98960 1.01441 1.20839 0.97129 0.89136 0.88378 1.44049 1.24065 1.34773 1.28281 1.19194 1.33451 0.96206 0.90130 0.91496 1.25073 1.01746 0.96674 0.95785 1.70031 1.43598 1.29280 1.11260 0.86217 0.79512 0.80529 0.80435 1.20214 1.21629 1.21419 1.21518 0.90840 0.88542 0.99735 1.22792 0.86213 0.92864 0.96247 0.92445 1.86459 1.40734 1.63686 1.46761 0.89112 0.89641 0.89169 0.83331 0.76732 0.91781 0.92082 0.95753 0.88793 0.93449 0.95272 0.92074 0.77862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.49 36.01 0.38 -0.33 16 2 C 0.06 0.67 7.59 -79.77 -0.61 0.06 16 3 N -0.34 -4.09 12.01 34.78 0.42 -3.67 16 4 O 0.12 1.40 11.06 18.65 0.21 1.61 16 5 C -0.08 -0.87 7.13 -34.63 -0.25 -1.11 16 6 C 0.36 3.36 5.81 36.00 0.21 3.57 16 7 F -0.18 -1.78 17.32 2.25 0.04 -1.74 16 8 F -0.17 -2.03 16.11 2.25 0.04 -1.99 16 9 C -0.19 -2.40 6.19 -102.89 -0.64 -3.04 16 10 C 0.59 8.91 6.55 -12.53 -0.08 8.82 16 11 O -0.52 -9.67 16.77 5.27 0.09 -9.58 16 12 N -0.69 -10.01 4.92 -54.85 -0.27 -10.28 16 13 C 0.16 2.78 2.11 -67.89 -0.14 2.64 16 14 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 15 C -0.15 -2.75 5.65 -26.61 -0.15 -2.90 16 16 C 0.17 3.96 5.30 -3.72 -0.02 3.94 16 17 N -0.59 -13.93 2.99 -172.32 -0.52 -14.45 16 18 C -0.26 -6.80 9.58 -15.06 -0.14 -6.95 16 19 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 20 C 0.01 0.18 4.92 -17.43 -0.09 0.09 16 21 N -0.90 -25.29 11.20 55.49 0.62 -24.67 16 22 Si 0.90 20.93 29.59 -169.99 -5.03 15.90 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.12 2.36 6.14 -3.71 -0.02 2.34 16 27 C 0.08 1.28 3.14 -26.60 -0.08 1.20 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 O -0.57 -7.87 13.16 -35.23 -0.46 -8.34 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.15 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.40 5.00 8.58 -40.82 -0.35 4.65 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 42 H 0.37 3.64 9.08 45.56 0.41 4.05 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -32.02 365.78 -5.40 -37.42 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.41 Total: 5.94 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -1.63 Total: 8.34 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.25 Total: -53.07 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.17 Total: -16.31 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.08 Total: -3.73 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.02 -5.40 -37.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090353999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.192 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds