Wall clock time and date at job start Wed Apr 1 2020 03:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.54462 * 112.29870 * 2 1 4 4 N 1.48336 * 104.32046 * 96.98320 * 3 2 1 5 5 C 1.36933 * 128.19827 * 221.80599 * 4 3 2 6 6 H 1.08000 * 120.00374 * 159.03722 * 5 4 3 7 7 C 1.38813 * 119.99861 * 339.03610 * 5 4 3 8 8 N 1.31617 * 120.00481 * 2.99167 * 7 5 4 9 9 Si 1.86798 * 119.99726 * 182.99510 * 7 5 4 10 10 H 1.48498 * 109.47690 * 59.99933 * 9 7 5 11 11 H 1.48505 * 109.46898 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47478 * 299.99727 * 9 7 5 13 13 C 1.48333 * 103.60286 * 41.80900 * 4 3 2 14 14 C 1.54449 * 104.32668 * 318.19031 * 13 4 3 15 15 H 1.08995 * 112.29871 * 263.01813 * 14 13 4 16 16 C 1.53741 * 109.01600 * 137.35992 * 14 13 4 17 17 N 1.47201 * 106.42803 * 229.46028 * 16 14 13 18 18 C 1.34773 * 126.69991 * 211.35320 * 17 16 14 19 19 O 1.21734 * 120.00133 * 6.11572 * 18 17 16 20 20 C 1.46420 * 119.99856 * 186.12208 * 18 17 16 21 21 C 1.35782 * 124.95647 * 186.03559 * 20 18 17 22 22 C 1.38871 * 115.18413 * 179.97438 * 21 20 18 23 23 N 1.39742 * 139.91966 * 180.02562 * 22 21 20 24 24 H 0.96996 * 125.62780 * 0.02562 * 23 22 21 25 25 C 1.36205 * 108.73727 * 180.02562 * 23 22 21 26 26 C 1.34514 * 109.29812 * 359.97438 * 25 23 22 27 27 C 1.38243 * 113.39042 * 359.97438 * 22 21 20 28 28 S 1.75609 * 124.95734 * 5.72549 * 20 18 17 29 29 C 1.47189 * 106.59676 * 31.36532 * 17 16 14 30 30 H 1.08993 * 109.47299 * 302.34922 * 1 2 3 31 31 H 1.09006 * 109.46797 * 62.34998 * 1 2 3 32 32 H 1.08997 * 109.46920 * 182.34747 * 1 2 3 33 33 H 1.08999 * 110.46177 * 338.27857 * 3 2 1 34 34 H 1.08996 * 110.46363 * 215.69692 * 3 2 1 35 35 H 0.97000 * 120.00368 * 179.97438 * 8 7 5 36 36 H 1.09006 * 110.46277 * 199.47666 * 13 4 3 37 37 H 1.08997 * 110.57142 * 76.95348 * 13 4 3 38 38 H 1.09001 * 110.06451 * 348.69816 * 16 14 13 39 39 H 1.09000 * 110.06745 * 110.21981 * 16 14 13 40 40 H 1.07999 * 122.40788 * 0.02562 * 21 20 18 41 41 H 1.08003 * 125.35135 * 179.97438 * 25 23 22 42 42 H 1.07996 * 126.07491 * 180.02562 * 26 25 23 43 43 H 1.08996 * 110.07090 * 209.39241 * 29 17 16 44 44 H 1.09000 * 110.10890 * 87.89687 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1161 1.4291 0.0000 4 7 2.4170 1.7023 1.4266 5 6 2.2026 2.8566 2.1313 6 1 2.1462 2.8287 3.2094 7 6 2.0577 4.0629 1.4598 8 7 2.0674 4.0890 0.1439 9 14 1.8488 5.6492 2.4239 10 1 3.0356 5.8616 3.2908 11 1 1.7145 6.7879 1.4801 12 1 0.6297 5.5593 3.2670 13 6 3.0052 0.4289 1.9091 14 6 2.1222 -0.6659 1.2712 15 1 1.3493 -1.0226 1.9520 16 6 3.0241 -1.7974 0.7516 17 7 2.6009 -2.0648 -0.6326 18 6 2.6422 -3.2500 -1.2728 19 8 2.9571 -4.2581 -0.6675 20 6 2.3086 -3.3251 -2.6965 21 6 2.2039 -4.4747 -3.4115 22 6 1.8762 -4.3099 -4.7509 23 7 1.6466 -5.0750 -5.8975 24 1 1.6886 -6.0427 -5.9488 25 6 1.3543 -4.2374 -6.9311 26 6 1.3862 -2.9653 -6.4951 27 6 1.7134 -2.9868 -5.1172 28 16 1.9780 -1.9420 -3.7268 29 6 2.1239 -0.7849 -1.1811 30 1 -0.3633 0.5498 0.8681 31 1 -0.3633 0.4769 -0.9104 32 1 -0.3633 -1.0268 0.0421 33 1 1.3829 2.1416 -0.3779 34 1 3.0280 1.4670 -0.5959 35 1 1.9658 4.9319 -0.3253 36 1 2.9547 0.3737 2.9966 37 1 4.0369 0.3313 1.5711 38 1 4.0674 -1.4820 0.7693 39 1 2.8926 -2.6908 1.3620 40 1 2.3632 -5.4474 -2.9700 41 1 1.1319 -4.5462 -7.9418 42 1 1.1951 -2.0843 -7.0897 43 1 1.3570 -0.9634 -1.9348 44 1 2.9551 -0.2313 -1.6178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092234017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:58 Heat of formation + Delta-G solvation = 77.452511 kcal Electronic energy + Delta-G solvation = -27848.804260 eV Core-core repulsion = 24087.547328 eV Total energy + Delta-G solvation = -3761.256932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.30984 -40.25618 -38.37638 -35.19764 -34.91549 -32.50555 -31.38906 -31.06458 -29.99755 -28.20446 -26.57583 -25.76742 -25.25558 -23.76908 -22.33519 -21.42001 -20.77395 -20.52792 -18.86616 -18.63760 -18.17966 -16.98525 -16.58989 -15.64271 -15.52037 -15.45722 -14.82271 -14.71019 -14.48439 -14.16882 -13.81049 -13.70508 -13.61767 -13.27869 -13.04441 -12.77224 -12.44341 -12.20447 -12.01637 -11.82935 -11.67545 -11.50134 -11.25088 -10.97756 -10.90187 -10.74819 -10.64412 -10.25345 -10.02025 -9.96200 -9.90362 -9.78842 -9.77614 -9.57157 -8.67874 -8.55458 -8.23173 -7.71085 -6.82581 -5.81601 -3.19918 0.47434 1.42920 1.96889 2.27787 2.50757 2.73400 3.18240 3.26694 3.37658 3.42919 3.43325 4.44338 4.49998 4.71490 4.81280 4.84013 4.99268 5.15994 5.25076 5.31277 5.45479 5.49685 5.60430 5.64150 5.68757 5.79701 5.81076 5.86823 5.89715 5.97478 6.13011 6.19521 6.29534 6.34969 6.36922 6.49132 6.57486 6.67082 6.71171 6.76841 6.95311 7.20481 7.25457 7.55450 7.64186 7.70934 8.18509 8.22061 9.08850 9.71015 10.51142 11.31144 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.002856 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.683870 B = 9800.187575 C =10919.216968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.091 4.091 3 C 0.165 3.835 4 N -0.592 5.592 5 C -0.227 4.227 6 H 0.074 0.926 7 C 0.000 4.000 8 N -0.913 5.913 9 Si 0.910 3.090 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.284 1.284 13 C 0.131 3.869 14 C -0.110 4.110 15 H 0.086 0.914 16 C 0.116 3.884 17 N -0.608 5.608 18 C 0.606 3.394 19 O -0.542 6.542 20 C -0.234 4.234 21 C -0.036 4.036 22 C 0.021 3.979 23 N -0.560 5.560 24 H 0.418 0.582 25 C 0.054 3.946 26 C -0.171 4.171 27 C -0.207 4.207 28 S 0.197 5.803 29 C 0.100 3.900 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.023 0.977 35 H 0.255 0.745 36 H 0.049 0.951 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.146 0.854 41 H 0.176 0.824 42 H 0.146 0.854 43 H 0.078 0.922 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.147 -16.296 -13.084 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.094 4.094 3 C 0.039 3.961 4 N -0.315 5.315 5 C -0.355 4.355 6 H 0.092 0.908 7 C -0.198 4.198 8 N -0.559 5.559 9 Si 0.740 3.260 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.211 1.211 13 C 0.004 3.996 14 C -0.131 4.131 15 H 0.104 0.896 16 C -0.007 4.007 17 N -0.340 5.340 18 C 0.395 3.605 19 O -0.422 6.422 20 C -0.354 4.354 21 C -0.072 4.072 22 C -0.092 4.092 23 N -0.162 5.162 24 H 0.255 0.745 25 C -0.080 4.080 26 C -0.201 4.201 27 C -0.328 4.328 28 S 0.462 5.538 29 C -0.024 4.024 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.116 0.884 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.164 0.836 41 H 0.193 0.807 42 H 0.164 0.836 43 H 0.096 0.904 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.025 -15.195 -12.581 19.831 hybrid contribution -0.026 -1.165 -0.053 1.167 sum -2.052 -16.360 -12.634 20.772 Atomic orbital electron populations 1.21563 0.93367 1.00183 1.02453 1.22552 0.95917 0.99139 0.91788 1.21874 0.98021 0.89521 0.86710 1.44975 1.69631 1.09371 1.07532 1.18898 1.43287 0.83056 0.90303 0.90798 1.24997 1.01470 0.97552 0.95745 1.69806 1.55014 1.25367 1.05679 0.86242 0.78014 0.82949 0.78794 1.21025 1.21555 1.21061 1.21875 0.93957 0.86636 0.97132 1.23117 0.97890 0.94872 0.97172 0.89616 1.22191 0.98533 0.98717 0.81226 1.48444 1.62630 1.07928 1.14980 1.16421 0.77650 0.82181 0.84244 1.90809 1.50172 1.34046 1.67177 1.23697 1.16333 0.97347 0.98035 1.19147 0.99513 0.99222 0.89338 1.17995 1.11980 0.89826 0.89409 1.41889 1.59004 1.08580 1.06691 0.74521 1.21851 1.03673 0.89527 0.92939 1.20159 1.11153 0.96942 0.91826 1.23859 1.11352 0.97267 1.00341 1.84527 1.70233 1.04319 0.94750 1.22572 0.99179 0.83668 0.96995 0.91594 0.92653 0.93982 0.88431 0.95883 0.93439 0.93244 0.95377 0.90901 0.90541 0.83615 0.80687 0.83593 0.90431 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 8.61 37.16 0.32 -1.64 16 2 C -0.09 -1.61 1.08 -152.16 -0.16 -1.77 16 3 C 0.17 3.66 5.12 -2.26 -0.01 3.65 16 4 N -0.59 -14.28 3.37 -168.47 -0.57 -14.85 16 5 C -0.23 -6.05 10.37 -15.06 -0.16 -6.20 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C 0.00 0.00 5.48 -17.43 -0.10 -0.10 16 8 N -0.91 -25.50 10.74 55.49 0.60 -24.90 16 9 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.13 2.58 6.76 -2.27 -0.02 2.56 16 14 C -0.11 -1.87 3.74 -88.29 -0.33 -2.20 16 15 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 16 C 0.12 1.83 6.57 -3.27 -0.02 1.81 16 17 N -0.61 -9.84 3.32 -173.29 -0.58 -10.42 16 18 C 0.61 10.15 7.82 -12.97 -0.10 10.04 16 19 O -0.54 -10.34 16.99 5.16 0.09 -10.25 16 20 C -0.23 -3.41 6.29 -37.17 -0.23 -3.64 16 21 C -0.04 -0.46 9.88 -40.23 -0.40 -0.86 16 22 C 0.02 0.25 7.67 -84.02 -0.64 -0.40 16 23 N -0.56 -4.53 6.21 -10.90 -0.07 -4.60 16 24 H 0.42 2.02 8.96 -40.82 -0.37 1.65 16 25 C 0.05 0.39 11.85 -16.93 -0.20 0.19 16 26 C -0.17 -1.67 10.85 -39.60 -0.43 -2.10 16 27 C -0.21 -2.55 7.31 -38.29 -0.28 -2.83 16 28 S 0.20 2.58 18.89 -107.50 -2.03 0.55 16 29 C 0.10 1.58 4.78 -3.28 -0.02 1.57 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 2.44 6.17 -51.93 -0.32 2.12 16 34 H 0.02 0.54 7.17 -51.93 -0.37 0.17 16 35 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.03 0.56 7.16 -51.93 -0.37 0.18 16 38 H 0.07 1.14 7.10 -51.93 -0.37 0.77 16 39 H 0.08 1.18 7.87 -51.93 -0.41 0.78 16 40 H 0.15 1.74 8.01 -52.49 -0.42 1.32 16 41 H 0.18 0.55 8.06 -52.48 -0.42 0.13 16 42 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.08 1.14 4.89 -31.67 -0.15 0.99 16 44 H 0.08 1.29 7.10 -51.93 -0.37 0.92 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -32.10 361.76 -10.55 -42.65 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.65 Total: 2.02 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.78 Total: -1.92 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.61 Total: -54.77 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.03 Total: 0.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.10 -10.55 -42.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092234017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.102 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds