Wall clock time and date at job start Wed Apr 1 2020 03:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00106 * 2 1 4 4 H 1.48500 * 109.47026 * 270.00379 * 3 2 1 5 5 H 1.48500 * 109.46794 * 29.99784 * 3 2 1 6 6 H 1.48497 * 109.47326 * 149.99558 * 3 2 1 7 7 C 1.38811 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00021 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00124 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99879 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.18306 * 35.43911 * 10 9 7 12 12 C 1.53033 * 109.32061 * 154.99706 * 10 9 7 13 13 C 1.53977 * 108.82150 * 175.67577 * 12 10 9 14 14 H 1.09007 * 112.99244 * 169.00252 * 13 12 10 15 15 C 1.55426 * 106.41426 * 293.81660 * 13 12 10 16 16 C 1.55173 * 100.35261 * 73.38420 * 15 13 12 17 17 H 1.08998 * 112.48636 * 162.67197 * 16 15 13 18 18 C 1.53890 * 106.64545 * 286.29603 * 16 15 13 19 19 N 1.47781 * 104.25603 * 40.54574 * 16 15 13 20 20 C 1.34778 * 125.85729 * 153.56586 * 19 16 15 21 21 O 1.21737 * 119.99880 * 0.02562 * 20 19 16 22 22 C 1.46451 * 120.00405 * 180.02562 * 20 19 16 23 23 C 1.37466 * 125.80811 * 180.02562 * 22 20 19 24 24 C 1.40657 * 107.55536 * 179.97438 * 23 22 20 25 25 S 1.76022 * 142.39219 * 179.97438 * 24 23 22 26 26 C 1.75596 * 91.30926 * 180.02562 * 25 24 23 27 27 C 1.32779 * 110.47217 * 359.97438 * 26 25 24 28 28 C 1.38239 * 108.03442 * 359.97438 * 24 23 22 29 29 N 1.37921 * 125.80204 * 359.71608 * 22 20 19 30 30 H 0.96995 * 125.68512 * 0.03812 * 29 22 20 31 31 C 1.47082 * 108.28912 * 333.53745 * 19 16 15 32 32 H 0.97000 * 120.00476 * 0.02562 * 1 2 3 33 33 H 0.97003 * 119.99711 * 359.97438 * 9 7 2 34 34 H 1.09001 * 109.58031 * 55.87916 * 12 10 9 35 35 H 1.08994 * 109.58262 * 295.47600 * 12 10 9 36 36 H 1.09007 * 111.22899 * 191.15548 * 15 13 12 37 37 H 1.08989 * 111.23752 * 315.60115 * 15 13 12 38 38 H 1.08997 * 109.53131 * 185.43634 * 18 16 15 39 39 H 1.09002 * 109.52834 * 305.58435 * 18 16 15 40 40 H 1.08001 * 126.22185 * 359.97438 * 23 22 20 41 41 H 1.07996 * 124.76494 * 180.02562 * 26 25 24 42 42 H 1.08000 * 122.15935 * 180.02562 * 27 26 25 43 43 H 1.08999 * 109.97384 * 241.74493 * 31 19 16 44 44 H 1.09002 * 109.97642 * 120.46603 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5650 -3.2003 -0.5962 12 6 5.4990 -2.2549 -0.6087 13 6 6.2976 -3.5672 -0.5040 14 1 7.2206 -3.5513 -1.0836 15 6 6.5309 -3.8196 1.0117 16 6 5.1055 -4.2537 1.4448 17 1 5.0999 -4.7658 2.4070 18 6 4.2407 -2.9807 1.4538 19 7 4.6377 -5.1190 0.3420 20 6 3.7261 -6.1063 0.4454 21 8 3.2105 -6.3484 1.5213 22 6 3.3559 -6.8880 -0.7364 23 6 2.4442 -7.9164 -0.7673 24 6 2.3860 -8.3922 -2.0897 25 16 1.5955 -9.5921 -3.1064 26 6 2.4823 -9.0395 -4.5176 27 6 3.2896 -8.0359 -4.1951 28 6 3.2649 -7.6458 -2.8522 29 7 3.8582 -6.7135 -2.0090 30 1 4.5172 -6.0519 -2.2714 31 6 5.3370 -4.7175 -0.8881 32 1 -0.4851 0.8400 -0.0004 33 1 3.8647 -0.3621 0.0007 34 1 6.0188 -1.4667 -0.0641 35 1 5.3974 -1.9718 -1.6564 36 1 7.2531 -4.6202 1.1720 37 1 6.8375 -2.9064 1.5214 38 1 3.2509 -3.2154 1.8452 39 1 4.7115 -2.2249 2.0825 40 1 1.8760 -8.2909 0.0713 41 1 2.3843 -9.4568 -5.5088 42 1 3.9242 -7.5520 -4.9228 43 1 4.6172 -4.3699 -1.6291 44 1 5.9041 -5.5593 -1.2857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095032209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:48 Heat of formation + Delta-G solvation = 48.281719 kcal Electronic energy + Delta-G solvation = -28351.867304 eV Core-core repulsion = 24589.345432 eV Total energy + Delta-G solvation = -3762.521873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.74151 -41.65138 -39.47243 -36.79207 -36.28589 -34.36141 -33.15334 -32.49310 -31.76789 -30.10325 -29.14355 -27.06937 -25.41914 -24.78062 -23.87240 -22.50200 -22.04664 -21.87756 -20.63878 -20.28018 -19.51801 -19.20930 -17.85407 -17.43567 -16.57320 -16.49093 -16.44088 -16.27571 -15.69685 -15.36178 -15.16963 -14.98903 -14.85401 -14.69495 -14.34276 -14.24096 -13.91429 -13.85292 -13.58224 -13.41975 -13.02941 -12.91683 -12.86309 -12.84441 -12.58218 -12.37852 -12.16786 -11.88780 -11.79590 -11.70430 -11.42335 -11.33975 -11.10125 -10.91375 -10.81362 -9.89868 -9.34987 -9.12956 -8.67491 -8.06979 -5.41872 -0.28991 0.55799 0.79712 1.14163 1.33264 1.39510 1.46904 1.57904 1.75925 1.96748 2.13794 2.44697 3.22201 3.29010 3.35211 3.47588 3.66731 3.79948 3.89685 3.96198 4.07944 4.16612 4.20835 4.29269 4.35129 4.40218 4.48502 4.51068 4.58529 4.70798 4.72781 4.73916 4.91706 4.98480 5.05479 5.06290 5.19230 5.22483 5.26716 5.38144 5.39315 5.45794 5.56385 5.70430 6.16941 6.24853 6.31682 6.86663 7.03867 7.78667 8.00289 9.15506 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011589 B = 0.003365 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.557981 B = 8319.261136 C = 9392.862997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.068 4.068 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.245 1.245 7 C -0.233 4.233 8 H 0.034 0.966 9 N -0.748 5.748 10 C 0.177 3.823 11 H 0.027 0.973 12 C -0.120 4.120 13 C -0.073 4.073 14 H 0.156 0.844 15 C -0.112 4.112 16 C 0.130 3.870 17 H 0.087 0.913 18 C -0.138 4.138 19 N -0.604 5.604 20 C 0.594 3.406 21 O -0.572 6.572 22 C -0.005 4.005 23 C -0.091 4.091 24 C -0.253 4.253 25 S 0.128 5.872 26 C -0.165 4.165 27 C -0.128 4.128 28 C 0.067 3.933 29 N -0.532 5.532 30 H 0.430 0.570 31 C 0.078 3.922 32 H 0.258 0.742 33 H 0.368 0.632 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.009 0.991 39 H 0.080 0.920 40 H 0.146 0.854 41 H 0.211 0.789 42 H 0.173 0.827 43 H 0.066 0.934 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.900 -16.248 -10.359 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.259 4.259 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.226 1.226 6 H -0.169 1.169 7 C -0.364 4.364 8 H 0.052 0.948 9 N -0.392 5.392 10 C 0.069 3.931 11 H 0.045 0.955 12 C -0.158 4.158 13 C -0.092 4.092 14 H 0.173 0.827 15 C -0.150 4.150 16 C 0.027 3.973 17 H 0.105 0.895 18 C -0.179 4.179 19 N -0.336 5.336 20 C 0.384 3.616 21 O -0.452 6.452 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.372 4.372 25 S 0.387 5.613 26 C -0.301 4.301 27 C -0.160 4.160 28 C -0.054 4.054 29 N -0.141 5.141 30 H 0.276 0.724 31 C -0.044 4.044 32 H 0.067 0.933 33 H 0.202 0.798 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.028 0.972 39 H 0.098 0.902 40 H 0.164 0.836 41 H 0.228 0.772 42 H 0.191 0.809 43 H 0.084 0.916 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 18.440 -17.457 -9.586 27.142 hybrid contribution 0.144 2.450 0.345 2.478 sum 18.584 -15.008 -9.241 25.612 Atomic orbital electron populations 1.69934 1.07595 1.26855 1.59515 1.25649 0.96176 1.01782 1.02256 0.85248 0.78605 0.78504 0.78357 1.19837 1.22551 1.16936 1.18881 0.83106 0.92663 1.41789 0.94784 1.42736 1.02057 1.04131 1.90232 1.20778 0.92741 0.86376 0.93163 0.95501 1.22140 0.93370 0.98619 1.01698 1.22689 0.98170 0.91051 0.97250 0.82687 1.23085 0.92857 1.03596 0.95457 1.22423 0.95470 0.88792 0.90612 0.89510 1.22917 0.97922 0.97094 0.99992 1.48550 1.40210 1.32377 1.12459 1.16868 0.78682 0.79325 0.86756 1.90829 1.55053 1.70115 1.29241 1.20011 1.04324 1.02793 0.84817 1.20509 0.99545 0.96655 0.95519 1.22938 1.08515 1.07259 0.98514 1.83894 1.44830 1.34204 0.98354 1.25756 1.00054 1.00783 1.03523 1.19222 1.04624 1.00551 0.91650 1.18961 0.98673 0.94243 0.93492 1.42540 1.36611 1.29628 1.05308 0.72371 1.22715 0.95663 0.99500 0.86568 0.93311 0.79769 0.89687 0.90637 0.88220 0.87651 0.97239 0.90189 0.83574 0.77181 0.80938 0.91582 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.95 13.97 21.65 0.30 -65.65 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 3 Si 0.97 45.61 27.74 68.60 1.90 47.51 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.25 -10.14 6.52 99.48 0.65 -9.49 16 7 C -0.23 -13.90 10.40 84.03 0.87 -13.03 16 8 H 0.03 2.34 8.06 -2.91 -0.02 2.32 16 9 N -0.75 -34.72 4.92 -320.48 -1.58 -36.29 16 10 C 0.18 6.46 2.41 45.51 0.11 6.57 16 11 H 0.03 1.13 5.89 -2.39 -0.01 1.12 16 12 C -0.12 -2.73 4.95 30.94 0.15 -2.57 16 13 C -0.07 -1.04 4.33 -9.05 -0.04 -1.08 16 14 H 0.16 0.90 8.14 -2.38 -0.02 0.88 16 15 C -0.11 -1.76 6.18 32.17 0.20 -1.57 16 16 C 0.13 3.57 3.94 45.79 0.18 3.75 16 17 H 0.09 2.55 8.02 -2.39 -0.02 2.53 16 18 C -0.14 -4.96 5.41 31.40 0.17 -4.79 16 19 N -0.60 -17.16 2.37 -789.13 -1.87 -19.03 16 20 C 0.59 21.10 7.82 86.38 0.68 21.78 16 21 O -0.57 -25.06 17.12 -4.47 -0.08 -25.13 16 22 C 0.00 -0.15 6.86 40.14 0.28 0.12 16 23 C -0.09 -2.91 10.60 22.68 0.24 -2.67 16 24 C -0.25 -6.91 7.26 22.86 0.17 -6.74 16 25 S 0.13 2.57 23.31 -56.49 -1.32 1.25 16 26 C -0.17 -2.33 11.13 66.64 0.74 -1.59 16 27 C -0.13 -2.09 10.16 21.49 0.22 -1.87 16 28 C 0.07 1.58 7.67 38.40 0.29 1.88 16 29 N -0.53 -12.87 5.76 -177.14 -1.02 -13.89 16 30 H 0.43 7.81 4.87 -92.71 -0.45 7.35 16 31 C 0.08 1.47 3.83 86.85 0.33 1.80 16 32 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 33 H 0.37 15.78 5.65 -92.71 -0.52 15.26 16 34 H 0.08 1.73 7.97 -2.39 -0.02 1.71 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.11 1.44 7.73 -2.39 -0.02 1.42 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.08 2.63 8.00 -2.39 -0.02 2.61 16 40 H 0.15 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.07 1.43 5.85 -2.39 -0.01 1.41 16 44 H 0.10 1.23 7.10 -2.39 -0.02 1.21 16 Total: -1.00 -87.03 358.57 1.43 -85.61 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 0.02 Total: 29.28 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.06 Total: -3.66 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -4.17 Total: -134.86 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.08 Total: -25.13 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -1.32 Total: 1.25 kcal Total: -87.03 1.43 -85.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095032209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.890 kcal (2) G-P(sol) polarization free energy of solvation -87.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds