Wall clock time and date at job start Wed Apr 1 2020 02:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00132 * 2 1 4 4 H 1.48496 * 109.47293 * 270.00353 * 3 2 1 5 5 H 1.48502 * 109.46672 * 30.00100 * 3 2 1 6 6 H 1.48500 * 109.47061 * 149.99844 * 3 2 1 7 7 C 1.38812 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99645 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00577 * 0.02562 * 7 2 1 10 10 C 1.47215 * 126.69925 * 0.02562 * 9 7 2 11 11 C 1.53774 * 106.37760 * 211.28704 * 10 9 7 12 12 H 1.09003 * 112.38834 * 219.30665 * 11 10 9 13 13 C 1.54326 * 109.79075 * 95.21940 * 11 10 9 14 14 C 1.55056 * 103.93701 * 221.68671 * 13 11 10 15 15 C 1.55059 * 102.10954 * 40.05851 * 14 13 11 16 16 C 1.54328 * 103.93402 * 319.94324 * 15 14 13 17 17 N 1.46497 * 111.69179 * 262.78721 * 16 15 14 18 18 C 1.34779 * 120.00025 * 298.98763 * 17 16 15 19 19 O 1.21720 * 120.00310 * 359.97438 * 18 17 16 20 20 C 1.46497 * 120.00025 * 180.02562 * 18 17 16 21 21 C 1.36110 * 125.71345 * 179.97438 * 20 18 17 22 22 C 1.42224 * 107.62807 * 180.02562 * 21 20 18 23 23 C 1.45594 * 140.78133 * 180.02562 * 22 21 20 24 24 C 1.31805 * 114.63612 * 179.97438 * 23 22 21 25 25 S 1.75359 * 111.24415 * 359.97438 * 24 23 22 26 26 C 1.38173 * 106.99459 * 359.97438 * 22 21 20 27 27 N 1.37456 * 108.17055 * 0.02562 * 26 22 21 28 28 H 0.96995 * 125.68551 * 180.02562 * 27 26 22 29 29 C 1.48670 * 126.20620 * 180.66929 * 9 7 2 30 30 H 0.97004 * 120.00200 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.07197 * 92.05858 * 10 9 7 32 32 H 1.09000 * 110.07239 * 330.51314 * 10 9 7 33 33 H 1.09003 * 110.53036 * 103.07668 * 13 11 10 34 34 H 1.08991 * 110.65640 * 340.35912 * 13 11 10 35 35 H 1.08996 * 110.90671 * 281.85508 * 14 13 11 36 36 H 1.08993 * 110.93238 * 158.26940 * 14 13 11 37 37 H 1.08999 * 110.53378 * 201.33610 * 15 14 13 38 38 H 1.08994 * 110.53702 * 78.55871 * 15 14 13 39 39 H 0.97002 * 120.00287 * 118.98831 * 17 16 15 40 40 H 1.07995 * 126.18527 * 359.96103 * 21 20 18 41 41 H 1.07998 * 122.68211 * 359.97438 * 23 22 21 42 42 H 1.08004 * 124.37919 * 179.97438 * 24 23 22 43 43 H 1.09005 * 110.90683 * 29.98483 * 29 9 7 44 44 H 1.09000 * 109.94433 * 267.98267 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1366 -2.5599 -0.0005 11 6 -0.4207 -3.8624 0.7660 12 1 -1.2232 -4.4443 0.3127 13 6 -0.7354 -3.5417 2.2424 14 6 0.0223 -4.6396 3.0328 15 6 1.3533 -4.7478 2.2446 16 6 0.9205 -4.6368 0.7674 17 7 0.7879 -5.9547 0.1416 18 6 1.8572 -6.7707 0.0559 19 8 2.9332 -6.4125 0.4981 20 6 1.7247 -8.0884 -0.5705 21 6 2.7231 -9.0015 -0.7189 22 6 2.1735 -10.1380 -1.3739 23 6 2.5590 -11.4538 -1.8637 24 6 1.5833 -12.1380 -2.4269 25 16 0.0818 -11.2322 -2.4132 26 6 0.8380 -9.8663 -1.6016 27 7 0.5658 -8.6120 -1.1095 28 1 -0.2966 -8.1688 -1.1358 29 6 1.9253 -3.7484 0.0151 30 1 -0.4851 0.8401 0.0004 31 1 -0.5030 -2.6406 -1.0239 32 1 -0.6125 -1.7183 0.5027 33 1 -1.8075 -3.6081 2.4279 34 1 -0.3628 -2.5528 2.5090 35 1 -0.5226 -5.5833 3.0073 36 1 0.2034 -4.3248 4.0604 37 1 1.8313 -5.7094 2.4317 38 1 2.0222 -3.9291 2.5097 39 1 -0.0694 -6.2401 -0.2112 40 1 3.7476 -8.8839 -0.3983 41 1 3.5641 -11.8384 -1.7728 42 1 1.6943 -13.1285 -2.8430 43 1 2.8838 -3.7453 0.5341 44 1 2.0530 -4.1094 -1.0054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098967535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:05 Heat of formation + Delta-G solvation = 66.458910 kcal Electronic energy + Delta-G solvation = -27929.443291 eV Core-core repulsion = 24167.709641 eV Total energy + Delta-G solvation = -3761.733650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.50461 -40.00831 -37.98377 -35.56935 -34.42502 -33.51340 -31.42798 -30.65648 -29.65296 -28.83061 -27.48567 -24.69257 -24.60119 -23.45218 -22.81159 -20.76185 -20.57713 -20.17567 -19.50663 -18.87436 -18.80683 -17.21122 -16.54726 -15.76925 -15.36889 -15.20333 -14.96068 -14.71444 -14.55039 -14.20333 -13.89843 -13.66232 -13.51345 -13.47045 -13.18241 -12.92594 -12.59417 -12.08885 -11.93003 -11.87516 -11.36712 -11.08491 -11.04923 -10.93481 -10.71498 -10.62099 -10.35024 -10.30280 -10.13740 -10.03076 -9.98766 -9.78604 -9.69526 -9.57861 -8.86819 -8.66653 -8.50452 -7.89585 -6.88375 -5.65668 -3.09721 0.82169 1.09339 1.25084 1.72657 2.70811 2.88386 3.15744 3.39801 3.41096 3.45375 3.47109 4.42255 4.49481 4.67424 4.78100 4.91529 5.09202 5.19893 5.30393 5.38098 5.48339 5.51855 5.57954 5.77567 5.81780 5.86338 5.94638 5.98713 6.05830 6.07814 6.17466 6.21841 6.29026 6.33044 6.49825 6.50433 6.59729 6.74000 6.78842 6.90729 6.91625 7.05420 7.37202 7.59451 7.60760 7.80654 8.24997 8.38290 9.20019 9.79125 10.46035 11.35820 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.019995 B = 0.002523 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.029449 B =11096.638779 C =11377.124426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.214 4.214 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.142 3.858 11 C -0.112 4.112 12 H 0.067 0.933 13 C -0.109 4.109 14 C -0.125 4.125 15 C -0.112 4.112 16 C 0.158 3.842 17 N -0.708 5.708 18 C 0.584 3.416 19 O -0.514 6.514 20 C 0.000 4.000 21 C -0.073 4.073 22 C -0.163 4.163 23 C -0.068 4.068 24 C -0.224 4.224 25 S 0.128 5.872 26 C -0.011 4.011 27 N -0.525 5.525 28 H 0.420 0.580 29 C 0.138 3.862 30 H 0.252 0.748 31 H 0.003 0.997 32 H 0.131 0.869 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.389 0.611 40 H 0.157 0.843 41 H 0.145 0.855 42 H 0.170 0.830 43 H 0.056 0.944 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 -22.993 -1.251 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.746 3.254 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.342 4.342 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.017 3.983 11 C -0.133 4.133 12 H 0.085 0.915 13 C -0.147 4.147 14 C -0.163 4.163 15 C -0.151 4.151 16 C 0.072 3.928 17 N -0.358 5.358 18 C 0.369 3.631 19 O -0.389 6.389 20 C -0.113 4.113 21 C -0.100 4.100 22 C -0.175 4.175 23 C -0.099 4.099 24 C -0.358 4.358 25 S 0.381 5.619 26 C -0.240 4.240 27 N -0.129 5.129 28 H 0.258 0.742 29 C 0.011 3.989 30 H 0.063 0.937 31 H 0.021 0.979 32 H 0.148 0.852 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.222 0.778 40 H 0.175 0.825 41 H 0.163 0.837 42 H 0.187 0.813 43 H 0.074 0.926 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -3.577 -22.619 -1.403 22.944 hybrid contribution 0.891 0.984 0.056 1.328 sum -2.686 -21.635 -1.347 21.843 Atomic orbital electron populations 1.69572 1.04872 1.24672 1.58217 1.24752 0.95721 0.97646 1.02686 0.86042 0.78556 0.83192 0.77571 1.21685 1.21662 1.20654 1.19134 0.90579 0.82161 1.42333 0.90313 1.44797 1.01513 0.99463 1.86100 1.21987 0.85632 0.94500 0.96216 1.23035 0.93701 0.98880 0.97654 0.91513 1.22441 0.98869 0.99666 0.93676 1.22601 0.96537 0.98403 0.98732 1.22671 0.97185 1.02301 0.92924 1.21922 0.97623 0.80221 0.93021 1.46016 1.11313 1.17614 1.60822 1.16930 0.84801 0.82143 0.79180 1.90885 1.26336 1.74120 1.47526 1.20270 0.86220 0.96665 1.08145 1.20743 0.98991 0.90240 1.00071 1.19390 0.92286 0.96750 1.09122 1.20343 1.00103 0.91514 0.97907 1.24851 0.95626 1.04729 1.10582 1.83910 1.11036 1.04639 1.62316 1.23545 0.99190 0.92566 1.08682 1.41442 1.11073 1.12029 1.48314 0.74175 1.21831 0.94922 0.85829 0.96333 0.93685 0.97889 0.85217 0.92513 0.90040 0.92608 0.91990 0.91646 0.90113 0.77758 0.82502 0.83745 0.81304 0.92603 0.96519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.24 10.08 55.49 0.56 -25.68 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 3 Si 0.92 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.21 -5.93 10.33 -15.06 -0.16 -6.09 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 9 N -0.59 -15.10 3.42 -169.93 -0.58 -15.68 16 10 C 0.14 3.33 5.62 -3.25 -0.02 3.31 16 11 C -0.11 -2.01 3.63 -88.53 -0.32 -2.34 16 12 H 0.07 1.02 7.71 -51.93 -0.40 0.62 16 13 C -0.11 -1.83 6.25 -24.95 -0.16 -1.98 16 14 C -0.13 -1.88 6.92 -24.56 -0.17 -2.05 16 15 C -0.11 -1.94 5.50 -24.95 -0.14 -2.08 16 16 C 0.16 2.81 0.93 -129.73 -0.12 2.69 16 17 N -0.71 -10.28 5.19 -47.02 -0.24 -10.52 16 18 C 0.58 9.02 7.07 -12.93 -0.09 8.93 16 19 O -0.51 -9.64 14.76 5.17 0.08 -9.56 16 20 C 0.00 0.00 6.97 -82.47 -0.57 -0.57 16 21 C -0.07 -0.93 10.58 -38.82 -0.41 -1.34 16 22 C -0.16 -1.88 6.80 -105.46 -0.72 -2.60 16 23 C -0.07 -0.61 10.42 -38.54 -0.40 -1.01 16 24 C -0.22 -1.71 11.03 28.84 0.32 -1.39 16 25 S 0.13 1.06 23.24 -107.50 -2.50 -1.44 16 26 C -0.01 -0.12 8.41 -15.05 -0.13 -0.25 16 27 N -0.53 -5.52 6.08 -7.94 -0.05 -5.57 16 28 H 0.42 3.27 8.14 -40.82 -0.33 2.94 16 29 C 0.14 3.05 5.36 -2.44 -0.01 3.03 16 30 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.13 3.39 4.93 -51.93 -0.26 3.13 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.61 7.62 -51.93 -0.40 1.22 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.13 6.64 -51.93 -0.35 0.78 16 38 H 0.08 1.56 7.57 -51.93 -0.39 1.17 16 39 H 0.39 4.44 7.36 -40.82 -0.30 4.14 16 40 H 0.16 1.89 8.06 -52.49 -0.42 1.46 16 41 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.06 1.29 7.52 -51.93 -0.39 0.90 16 44 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -31.90 363.38 -11.21 -43.11 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.74 Total: 7.07 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -3.19 Total: -4.20 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.31 Total: -57.45 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.50 Total: -1.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.90 -11.21 -43.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098967535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.570 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds