Wall clock time and date at job start Wed Apr 1 2020 02:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00132 * 2 1 4 4 H 1.48496 * 109.47293 * 270.00353 * 3 2 1 5 5 H 1.48502 * 109.46672 * 30.00100 * 3 2 1 6 6 H 1.48500 * 109.47061 * 149.99844 * 3 2 1 7 7 C 1.38812 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99645 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00577 * 0.02562 * 7 2 1 10 10 C 1.47215 * 126.69925 * 0.02562 * 9 7 2 11 11 C 1.53774 * 106.37760 * 211.28704 * 10 9 7 12 12 H 1.09003 * 112.38834 * 219.30665 * 11 10 9 13 13 C 1.54326 * 109.79075 * 95.21940 * 11 10 9 14 14 C 1.55056 * 103.93701 * 221.68671 * 13 11 10 15 15 C 1.55059 * 102.10954 * 40.05851 * 14 13 11 16 16 C 1.54328 * 103.93402 * 319.94324 * 15 14 13 17 17 N 1.46497 * 111.69179 * 262.78721 * 16 15 14 18 18 C 1.34779 * 120.00025 * 298.98763 * 17 16 15 19 19 O 1.21720 * 120.00310 * 359.97438 * 18 17 16 20 20 C 1.46497 * 120.00025 * 180.02562 * 18 17 16 21 21 C 1.36110 * 125.71345 * 179.97438 * 20 18 17 22 22 C 1.42224 * 107.62807 * 180.02562 * 21 20 18 23 23 C 1.45594 * 140.78133 * 180.02562 * 22 21 20 24 24 C 1.31805 * 114.63612 * 179.97438 * 23 22 21 25 25 S 1.75359 * 111.24415 * 359.97438 * 24 23 22 26 26 C 1.38173 * 106.99459 * 359.97438 * 22 21 20 27 27 N 1.37456 * 108.17055 * 0.02562 * 26 22 21 28 28 H 0.96995 * 125.68551 * 180.02562 * 27 26 22 29 29 C 1.48670 * 126.20620 * 180.66929 * 9 7 2 30 30 H 0.97004 * 120.00200 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.07197 * 92.05858 * 10 9 7 32 32 H 1.09000 * 110.07239 * 330.51314 * 10 9 7 33 33 H 1.09003 * 110.53036 * 103.07668 * 13 11 10 34 34 H 1.08991 * 110.65640 * 340.35912 * 13 11 10 35 35 H 1.08996 * 110.90671 * 281.85508 * 14 13 11 36 36 H 1.08993 * 110.93238 * 158.26940 * 14 13 11 37 37 H 1.08999 * 110.53378 * 201.33610 * 15 14 13 38 38 H 1.08994 * 110.53702 * 78.55871 * 15 14 13 39 39 H 0.97002 * 120.00287 * 118.98831 * 17 16 15 40 40 H 1.07995 * 126.18527 * 359.96103 * 21 20 18 41 41 H 1.07998 * 122.68211 * 359.97438 * 23 22 21 42 42 H 1.08004 * 124.37919 * 179.97438 * 24 23 22 43 43 H 1.09005 * 110.90683 * 29.98483 * 29 9 7 44 44 H 1.09000 * 109.94433 * 267.98267 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1366 -2.5599 -0.0005 11 6 -0.4207 -3.8624 0.7660 12 1 -1.2232 -4.4443 0.3127 13 6 -0.7354 -3.5417 2.2424 14 6 0.0223 -4.6396 3.0328 15 6 1.3533 -4.7478 2.2446 16 6 0.9205 -4.6368 0.7674 17 7 0.7879 -5.9547 0.1416 18 6 1.8572 -6.7707 0.0559 19 8 2.9332 -6.4125 0.4981 20 6 1.7247 -8.0884 -0.5705 21 6 2.7231 -9.0015 -0.7189 22 6 2.1735 -10.1380 -1.3739 23 6 2.5590 -11.4538 -1.8637 24 6 1.5833 -12.1380 -2.4269 25 16 0.0818 -11.2322 -2.4132 26 6 0.8380 -9.8663 -1.6016 27 7 0.5658 -8.6120 -1.1095 28 1 -0.2966 -8.1688 -1.1358 29 6 1.9253 -3.7484 0.0151 30 1 -0.4851 0.8401 0.0004 31 1 -0.5030 -2.6406 -1.0239 32 1 -0.6125 -1.7183 0.5027 33 1 -1.8075 -3.6081 2.4279 34 1 -0.3628 -2.5528 2.5090 35 1 -0.5226 -5.5833 3.0073 36 1 0.2034 -4.3248 4.0604 37 1 1.8313 -5.7094 2.4317 38 1 2.0222 -3.9291 2.5097 39 1 -0.0694 -6.2401 -0.2112 40 1 3.7476 -8.8839 -0.3983 41 1 3.5641 -11.8384 -1.7728 42 1 1.6943 -13.1285 -2.8430 43 1 2.8838 -3.7453 0.5341 44 1 2.0530 -4.1094 -1.0054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098967535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:04 Heat of formation + Delta-G solvation = 46.291043 kcal Electronic energy + Delta-G solvation = -27930.317836 eV Core-core repulsion = 24167.709641 eV Total energy + Delta-G solvation = -3762.608195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.46051 -41.36145 -39.37463 -36.33063 -36.22841 -34.81820 -33.39510 -31.56268 -31.14973 -30.11024 -28.89544 -26.37033 -26.33683 -24.47873 -23.71551 -22.37179 -22.01065 -21.12429 -20.56569 -20.07694 -20.00663 -19.01346 -17.70075 -17.26869 -16.75136 -16.47692 -15.99724 -15.87395 -15.58213 -15.42478 -15.37512 -15.21033 -14.91890 -14.74566 -14.51701 -14.41180 -13.80766 -13.58891 -13.12079 -12.85442 -12.83136 -12.79030 -12.59420 -12.22742 -12.14584 -12.05364 -11.92260 -11.75289 -11.74582 -11.71388 -11.63694 -11.45948 -11.10617 -10.76661 -10.55844 -10.20515 -9.28526 -8.94195 -8.64028 -7.77524 -5.25055 0.08680 0.20025 0.43615 1.07736 1.45390 1.46564 1.55599 1.82297 1.89180 2.11522 2.32413 2.47606 3.28758 3.37002 3.56319 3.69417 3.79401 3.83563 3.85260 4.02199 4.34829 4.36537 4.41858 4.48127 4.57083 4.64230 4.66403 4.75606 4.77760 4.83102 4.90924 5.00368 5.06208 5.11724 5.19066 5.20906 5.26556 5.38542 5.43506 5.45289 5.55240 5.63763 5.66096 5.79134 6.13582 6.35682 6.45215 7.04471 7.10353 7.71803 8.38838 9.21008 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.019995 B = 0.002523 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.029449 B =11096.638779 C =11377.124426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.060 4.060 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.237 4.237 8 H 0.072 0.928 9 N -0.613 5.613 10 C 0.144 3.856 11 C -0.101 4.101 12 H 0.105 0.895 13 C -0.105 4.105 14 C -0.110 4.110 15 C -0.110 4.110 16 C 0.172 3.828 17 N -0.696 5.696 18 C 0.587 3.413 19 O -0.554 6.554 20 C -0.015 4.015 21 C -0.083 4.083 22 C -0.182 4.182 23 C -0.088 4.088 24 C -0.212 4.212 25 S 0.159 5.841 26 C -0.021 4.021 27 N -0.516 5.516 28 H 0.432 0.568 29 C 0.140 3.860 30 H 0.250 0.750 31 H -0.019 1.019 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.408 0.592 40 H 0.154 0.846 41 H 0.163 0.837 42 H 0.202 0.798 43 H 0.035 0.965 44 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 -25.749 -1.356 26.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.252 4.252 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.366 4.366 8 H 0.090 0.910 9 N -0.338 5.338 10 C 0.018 3.982 11 C -0.121 4.121 12 H 0.123 0.877 13 C -0.143 4.143 14 C -0.147 4.147 15 C -0.148 4.148 16 C 0.085 3.915 17 N -0.347 5.347 18 C 0.375 3.625 19 O -0.432 6.432 20 C -0.128 4.128 21 C -0.112 4.112 22 C -0.195 4.195 23 C -0.118 4.118 24 C -0.345 4.345 25 S 0.412 5.588 26 C -0.250 4.250 27 N -0.120 5.120 28 H 0.273 0.727 29 C 0.013 3.987 30 H 0.060 0.940 31 H -0.001 1.001 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.245 0.755 40 H 0.171 0.829 41 H 0.180 0.820 42 H 0.219 0.781 43 H 0.053 0.947 44 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -5.164 -25.409 -1.521 25.973 hybrid contribution 1.402 1.737 -0.031 2.232 sum -3.762 -23.673 -1.552 24.020 Atomic orbital electron populations 1.69810 1.05864 1.25062 1.58460 1.25521 0.96679 1.00496 1.02536 0.85076 0.77616 0.79206 0.77414 1.21481 1.21336 1.19929 1.19382 0.90729 0.83666 1.42853 0.90999 1.45022 1.02648 1.00006 1.86170 1.21845 0.84324 0.96638 0.95351 1.22932 0.94685 0.96368 0.98126 0.87719 1.22359 1.00805 0.98347 0.92761 1.22553 0.94563 0.99054 0.98542 1.22575 0.98263 1.01126 0.92885 1.21525 0.96166 0.80956 0.92862 1.45748 1.12267 1.16115 1.60578 1.17189 0.84135 0.82789 0.78429 1.90866 1.27845 1.75173 1.49317 1.19782 0.87563 0.95719 1.09738 1.20898 0.99025 0.91022 1.00207 1.19714 0.92798 0.97574 1.09412 1.20546 1.01597 0.90742 0.98865 1.25316 0.94747 1.05615 1.08867 1.83899 1.10867 1.02922 1.61084 1.24014 0.99706 0.92935 1.08333 1.41301 1.10885 1.12044 1.47808 0.72719 1.21842 0.95448 0.85567 0.95812 0.94011 1.00146 0.87773 0.89499 0.93831 0.89524 0.90789 0.91452 0.93169 0.75534 0.82870 0.81977 0.78097 0.94671 0.97987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.06 10.08 21.65 0.22 -54.84 16 2 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16 3 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.24 -13.76 10.33 84.03 0.87 -12.89 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.61 -32.64 3.42 -691.54 -2.37 -35.01 16 10 C 0.14 6.92 5.62 86.50 0.49 7.41 16 11 C -0.10 -3.53 3.63 -9.44 -0.03 -3.57 16 12 H 0.10 2.89 7.71 -2.39 -0.02 2.87 16 13 C -0.10 -3.37 6.25 31.75 0.20 -3.17 16 14 C -0.11 -3.03 6.92 32.00 0.22 -2.81 16 15 C -0.11 -3.79 5.50 31.75 0.17 -3.61 16 16 C 0.17 6.12 0.93 4.96 0.00 6.12 16 17 N -0.70 -19.57 5.19 -420.87 -2.18 -21.76 16 18 C 0.59 18.16 7.07 86.39 0.61 18.77 16 19 O -0.55 -21.51 14.76 -4.41 -0.07 -21.57 16 20 C -0.01 -0.37 6.97 39.81 0.28 -0.10 16 21 C -0.08 -2.12 10.58 22.76 0.24 -1.88 16 22 C -0.18 -3.98 6.80 -20.41 -0.14 -4.12 16 23 C -0.09 -1.37 10.42 23.40 0.24 -1.13 16 24 C -0.21 -2.50 11.03 67.05 0.74 -1.76 16 25 S 0.16 2.16 23.24 -56.49 -1.31 0.84 16 26 C -0.02 -0.41 8.41 83.80 0.70 0.30 16 27 N -0.52 -10.00 6.08 -179.04 -1.09 -11.09 16 28 H 0.43 5.75 8.14 -92.71 -0.75 4.99 16 29 C 0.14 6.48 5.36 86.22 0.46 6.95 16 30 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 31 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 32 H 0.10 5.63 4.93 -2.39 -0.01 5.62 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.04 1.74 7.62 -2.39 -0.02 1.72 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 2.30 6.64 -2.39 -0.02 2.28 16 38 H 0.05 2.02 7.57 -2.39 -0.02 2.01 16 39 H 0.41 8.38 7.36 -92.71 -0.68 7.69 16 40 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 41 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.20 1.01 8.06 -2.91 -0.02 0.98 16 43 H 0.03 1.74 7.52 -2.38 -0.02 1.72 16 44 H 0.00 0.11 8.05 -2.39 -0.02 0.09 16 Total: -1.00 -73.08 363.38 0.38 -72.71 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -0.38 Total: 20.85 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.52 Total: 1.57 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -5.42 Total: -122.69 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.07 Total: -21.57 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.31 Total: 0.84 kcal Total: -73.08 0.38 -72.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098967535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.998 kcal (2) G-P(sol) polarization free energy of solvation -73.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds