Wall clock time and date at job start Wed Apr 1 2020 03:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38976 * 119.96819 * 2 1 4 4 C 1.35906 * 120.87665 * 180.02562 * 3 2 1 5 5 C 1.41548 * 120.51093 * 359.95680 * 4 3 2 6 6 N 1.33342 * 128.82060 * 180.02562 * 5 4 3 7 7 C 1.28959 * 118.22331 * 180.02562 * 6 5 4 8 8 C 1.47834 * 124.86656 * 180.02562 * 7 6 5 9 9 O 1.21542 * 119.99619 * 172.73435 * 8 7 6 10 10 N 1.34777 * 120.00210 * 352.73130 * 8 7 6 11 11 C 1.47073 * 120.88025 * 183.29538 * 10 8 7 12 12 C 1.53694 * 108.27661 * 128.75385 * 11 10 8 13 13 N 1.46899 * 109.25754 * 54.08213 * 12 11 10 14 14 C 1.46902 * 110.99946 * 172.60635 * 13 12 11 15 15 C 1.50692 * 109.47201 * 294.29981 * 14 13 12 16 16 H 1.08004 * 120.00147 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00268 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00148 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99452 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47148 * 90.00187 * 19 17 15 21 21 H 1.48498 * 109.46640 * 209.99949 * 19 17 15 22 22 H 1.48499 * 109.47073 * 329.99642 * 19 17 15 23 23 C 1.46898 * 111.26789 * 296.75565 * 13 12 11 24 24 C 1.47081 * 120.87773 * 3.56816 * 10 8 7 25 25 S 1.75864 * 110.26074 * 359.97438 * 7 6 5 26 26 C 1.40265 * 118.22205 * 0.03843 * 5 4 3 27 27 C 1.37502 * 119.96233 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47697 * 269.98547 * 1 2 3 29 29 H 1.09005 * 109.47226 * 29.98328 * 1 2 3 30 30 H 1.08995 * 109.47433 * 149.98155 * 1 2 3 31 31 H 1.08007 * 119.55854 * 0.03560 * 3 2 1 32 32 H 1.07999 * 119.74512 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.62793 * 248.51802 * 11 10 8 34 34 H 1.09002 * 109.63362 * 9.09906 * 11 10 8 35 35 H 1.08995 * 109.64722 * 294.07515 * 12 11 10 36 36 H 1.09009 * 109.42106 * 173.94402 * 12 11 10 37 37 H 1.09001 * 109.47108 * 54.30053 * 14 13 12 38 38 H 1.09008 * 109.46943 * 174.29924 * 14 13 12 39 39 H 0.97003 * 119.99620 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.49461 * 303.14509 * 23 13 12 41 41 H 1.09001 * 109.51666 * 183.08225 * 23 13 12 42 42 H 1.08997 * 109.62996 * 350.89958 * 24 10 8 43 43 H 1.09002 * 109.62316 * 111.47815 * 24 10 8 44 44 H 1.08003 * 119.98560 * 359.95576 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2012 1.2039 0.0000 4 6 3.5601 1.2255 -0.0005 5 6 4.2979 0.0176 -0.0002 6 7 5.6203 -0.1542 -0.0001 7 6 6.0787 -1.3596 -0.0002 8 6 7.5128 -1.7183 0.0003 9 8 7.8488 -2.8788 0.1333 10 7 8.4476 -0.7586 -0.1466 11 6 9.8760 -1.1013 -0.2210 12 6 10.4704 -0.4222 -1.4651 13 7 10.1791 1.0168 -1.4173 14 6 10.8770 1.7312 -2.4946 15 6 12.3647 1.6515 -2.2687 16 1 12.7531 1.1226 -1.4108 17 6 13.2303 2.2537 -3.1571 18 7 14.5287 2.1837 -2.9601 19 14 12.5585 3.1691 -4.6404 20 1 12.3303 4.5921 -4.2823 21 1 13.5363 3.0899 -5.7553 22 1 11.2752 2.5529 -5.0629 23 6 8.7329 1.2697 -1.4686 24 6 8.0668 0.6595 -0.2308 25 16 4.7531 -2.5153 0.0002 26 6 3.5890 -1.1928 -0.0001 27 6 2.1937 -1.1913 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3634 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6534 2.1348 0.0006 32 1 4.0810 2.1716 -0.0001 33 1 10.3854 -0.7434 0.6738 34 1 9.9895 -2.1823 -0.3028 35 1 10.0291 -0.8531 -2.3638 36 1 11.5497 -0.5745 -1.4803 37 1 10.6300 1.2744 -3.4530 38 1 10.5656 2.7759 -2.4990 39 1 15.1376 2.6071 -3.5854 40 1 8.3158 0.8153 -2.3673 41 1 8.5516 2.3444 -1.4868 42 1 6.9836 0.7432 -0.3192 43 1 8.4056 1.1833 0.6630 44 1 1.6528 -2.1261 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147557413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:29 Heat of formation + Delta-G solvation = 54.613484 kcal Electronic energy + Delta-G solvation = -27080.837226 eV Core-core repulsion = 23318.589920 eV Total energy + Delta-G solvation = -3762.247307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.02591 -39.92995 -37.73392 -37.48811 -34.53411 -32.52000 -32.27444 -31.55050 -30.69741 -29.03774 -27.74671 -25.90203 -24.80499 -24.02119 -23.09730 -22.03336 -21.39002 -20.64146 -19.14219 -18.62861 -17.50080 -16.81548 -16.43486 -15.95390 -15.82906 -15.54263 -14.95718 -14.76045 -14.61271 -14.54744 -14.32724 -14.02467 -13.91498 -13.81767 -13.48265 -13.16620 -12.89194 -12.63002 -12.42529 -12.31856 -12.09330 -11.73942 -11.58577 -11.29123 -11.23706 -10.99560 -10.79402 -10.58146 -10.56619 -10.51529 -10.45388 -9.95557 -9.41271 -9.19262 -8.99839 -8.60130 -8.56740 -8.50327 -7.44304 -6.07915 -4.05674 -0.32654 0.71466 0.72089 1.28701 1.56462 2.81765 2.86483 3.26245 3.26534 3.34125 3.35886 3.52071 4.11921 4.27827 4.39504 4.41807 4.61523 4.68613 4.73892 4.97962 5.06755 5.10062 5.23994 5.30309 5.33898 5.40283 5.50144 5.55916 5.60872 5.65313 5.71288 5.78416 5.89729 5.97924 6.17477 6.21115 6.33147 6.37355 6.48660 6.60767 6.81837 6.94228 7.01852 7.33633 7.54227 7.82851 7.93123 7.97018 8.61376 8.99747 9.53552 11.04938 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.002537 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.864871 B =11035.430786 C =12267.148918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.111 4.111 4 C -0.049 4.049 5 C 0.066 3.934 6 N -0.422 5.422 7 C 0.070 3.930 8 C 0.586 3.414 9 O -0.530 6.530 10 N -0.573 5.573 11 C 0.114 3.886 12 C 0.051 3.949 13 N -0.528 5.528 14 C 0.162 3.838 15 C -0.511 4.511 16 H 0.082 0.918 17 C 0.069 3.931 18 N -0.899 5.899 19 Si 0.875 3.125 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.269 1.269 23 C 0.041 3.959 24 C 0.066 3.934 25 S 0.158 5.842 26 C -0.172 4.172 27 C -0.079 4.079 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.026 0.974 36 H 0.105 0.895 37 H -0.012 1.012 38 H 0.026 0.974 39 H 0.264 0.736 40 H 0.024 0.976 41 H 0.081 0.919 42 H 0.147 0.853 43 H 0.075 0.925 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.847 -4.896 6.834 31.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.062 4.062 3 C -0.131 4.131 4 C -0.070 4.070 5 C -0.056 4.056 6 N -0.138 5.138 7 C -0.214 4.214 8 C 0.368 3.632 9 O -0.407 6.407 10 N -0.305 5.305 11 C -0.008 4.008 12 C -0.078 4.078 13 N -0.253 5.253 14 C 0.036 3.964 15 C -0.549 4.549 16 H 0.100 0.900 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.702 3.298 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.194 1.194 23 C -0.089 4.089 24 C -0.057 4.057 25 S 0.416 5.584 26 C -0.292 4.292 27 C -0.102 4.102 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.044 0.956 36 H 0.123 0.877 37 H 0.006 0.994 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.099 0.901 42 H 0.163 0.837 43 H 0.093 0.907 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -28.869 -6.025 7.265 30.373 hybrid contribution -0.736 1.233 -1.674 2.205 sum -29.606 -4.792 5.592 30.508 Atomic orbital electron populations 1.20840 0.90080 1.03421 1.02898 1.19961 0.96516 0.92401 0.97347 1.20647 0.93519 0.98193 1.00780 1.20571 0.93342 0.95837 0.97202 1.19190 0.86973 0.94110 1.05299 1.65801 1.12745 1.21189 1.14114 1.27388 0.99402 0.90789 1.03792 1.16936 0.82200 0.85453 0.78574 1.90830 1.80452 1.18208 1.51217 1.48085 1.06782 1.07548 1.68070 1.22146 0.77759 1.00943 0.99948 1.22464 1.02570 0.88290 0.94451 1.61933 1.05814 1.08360 1.49144 1.20174 0.95468 0.93249 0.87467 1.21016 0.87997 1.34891 1.11025 0.90024 1.24901 0.94748 0.96002 0.97651 1.69892 1.01743 1.44803 1.37299 0.86867 0.79093 0.80722 0.83100 1.20120 1.21193 1.19352 1.22442 0.89952 1.00586 0.95895 1.23264 1.05056 0.78500 0.98892 1.85169 0.94838 1.06582 1.71850 1.24170 0.99540 0.96883 1.08602 1.20194 0.89797 0.98698 1.01535 0.90504 0.90858 0.91103 0.84513 0.84177 0.89996 0.88948 0.95591 0.87661 0.99410 0.95642 0.92625 0.95766 0.90076 0.83676 0.90719 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.41 10.01 36.00 0.36 -0.05 16 2 C -0.06 -0.37 5.88 -104.62 -0.62 -0.99 16 3 C -0.11 -0.72 9.59 -40.14 -0.39 -1.11 16 4 C -0.05 -0.42 10.06 -39.16 -0.39 -0.81 16 5 C 0.07 0.75 6.93 -85.19 -0.59 0.15 16 6 N -0.42 -5.47 6.70 -8.55 -0.06 -5.53 16 7 C 0.07 0.96 7.23 -14.83 -0.11 0.86 16 8 C 0.59 9.38 7.72 -12.33 -0.10 9.29 16 9 O -0.53 -9.49 16.38 5.33 0.09 -9.40 16 10 N -0.57 -9.21 3.00 -173.31 -0.52 -9.73 16 11 C 0.11 1.89 6.62 -3.37 -0.02 1.87 16 12 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 13 N -0.53 -10.90 4.62 -235.47 -1.09 -11.99 16 14 C 0.16 3.90 3.79 -4.98 -0.02 3.88 16 15 C -0.51 -14.27 8.96 -34.44 -0.31 -14.58 16 16 H 0.08 2.46 7.37 -52.48 -0.39 2.08 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 19 Si 0.87 21.35 27.47 -169.99 -4.67 16.69 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 23 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 24 C 0.07 0.98 6.42 -3.60 -0.02 0.96 16 25 S 0.16 1.81 23.18 -107.50 -2.49 -0.69 16 26 C -0.17 -1.79 6.56 -38.34 -0.25 -2.04 16 27 C -0.08 -0.62 9.71 -39.37 -0.38 -1.00 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.19 8.09 -51.93 -0.42 -0.23 16 30 H 0.07 0.21 8.08 -51.93 -0.42 -0.21 16 31 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.09 1.48 7.08 -51.93 -0.37 1.11 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.11 2.20 6.67 -51.92 -0.35 1.85 16 37 H -0.01 -0.29 7.18 -51.93 -0.37 -0.66 16 38 H 0.03 0.61 7.40 -51.92 -0.38 0.22 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 42 H 0.15 2.03 3.81 -79.43 -0.30 1.72 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -32.60 368.98 -11.34 -43.94 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.96 Total: -2.30 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.97 Total: -0.06 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.89 Total: -53.73 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.49 Total: -0.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.60 -11.34 -43.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147557413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.558 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds