Wall clock time and date at job start Wed Apr 1 2020 02:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99840 * 2 1 4 4 H 1.48507 * 109.46880 * 270.00019 * 3 2 1 5 5 H 1.48504 * 109.47279 * 29.99954 * 3 2 1 6 6 H 1.48495 * 109.47123 * 150.00370 * 3 2 1 7 7 C 1.38812 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99351 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00152 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99702 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46789 * 179.97438 * 10 9 7 12 12 C 1.53042 * 109.45811 * 64.93798 * 11 10 9 13 13 C 1.53195 * 109.31018 * 181.38299 * 12 11 10 14 14 N 1.46923 * 108.77762 * 305.36394 * 13 12 11 15 15 C 1.34769 * 120.62890 * 233.59167 * 14 13 12 16 16 O 1.21618 * 119.99849 * 174.38513 * 15 14 13 17 17 C 1.47363 * 120.00591 * 354.38220 * 15 14 13 18 18 C 1.38769 * 120.54912 * 312.11831 * 17 15 14 19 19 N 1.31898 * 121.12218 * 179.97438 * 18 17 15 20 20 C 1.31667 * 122.21580 * 359.97438 * 19 18 17 21 21 C 1.39281 * 121.14409 * 359.97438 * 20 19 18 22 22 S 1.75883 * 131.39404 * 179.97438 * 21 20 19 23 23 C 1.75551 * 91.52300 * 180.02562 * 22 21 20 24 24 C 1.32479 * 110.79719 * 359.97438 * 23 22 21 25 25 C 1.40018 * 115.77703 * 359.75373 * 24 23 22 26 26 C 1.46931 * 118.73754 * 53.60410 * 14 13 12 27 27 C 1.53039 * 109.45851 * 185.00144 * 11 10 9 28 28 H 0.96993 * 120.00098 * 359.97438 * 1 2 3 29 29 H 0.96995 * 120.00232 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47209 * 60.00400 * 10 9 7 31 31 H 1.08999 * 109.47498 * 299.99923 * 10 9 7 32 32 H 1.08995 * 109.44880 * 304.96880 * 11 10 9 33 33 H 1.08995 * 109.49775 * 61.42825 * 12 11 10 34 34 H 1.09000 * 109.49697 * 301.33659 * 12 11 10 35 35 H 1.08999 * 109.58357 * 185.57224 * 13 12 11 36 36 H 1.09000 * 109.58712 * 65.15124 * 13 12 11 37 37 H 1.07998 * 119.43920 * 359.97438 * 18 17 15 38 38 H 1.08008 * 119.42763 * 180.02562 * 20 19 18 39 39 H 1.08002 * 124.60307 * 179.97438 * 23 22 21 40 40 H 1.08003 * 122.11134 * 180.02562 * 24 23 22 41 41 H 1.09002 * 109.58349 * 66.18414 * 26 14 13 42 42 H 1.09001 * 109.58147 * 186.46246 * 26 14 13 43 43 H 1.09005 * 109.49714 * 58.66516 * 27 11 10 44 44 H 1.09000 * 109.52499 * 298.58648 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6568 0.0016 11 6 1.0638 -4.8197 0.0035 12 6 0.2664 -4.8109 -1.3027 13 6 -0.7516 -5.9555 -1.2825 14 7 -0.0425 -7.2145 -1.0170 15 6 -0.1852 -8.2702 -1.8425 16 8 0.4839 -9.2712 -1.6708 17 6 -1.1520 -8.2118 -2.9531 18 6 -2.4495 -7.7702 -2.7363 19 7 -3.3239 -7.7130 -3.7222 20 6 -3.0181 -8.0669 -4.9530 21 6 -1.7423 -8.5231 -5.2755 22 16 -1.0495 -9.0579 -6.8011 23 6 0.5022 -9.3688 -6.0413 24 6 0.4593 -9.0807 -4.7489 25 6 -0.7666 -8.6003 -4.2726 26 6 0.8250 -7.3009 0.1658 27 6 1.8253 -6.1413 0.1293 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 0.0016 30 1 2.6854 -3.7141 0.8911 31 1 2.6841 -3.7150 -0.8888 32 1 0.3813 -4.7122 0.8465 33 1 0.9459 -4.9431 -2.1446 34 1 -0.2570 -3.8601 -1.4029 35 1 -1.2533 -6.0152 -2.2483 36 1 -1.4863 -5.7773 -0.4972 37 1 -2.7485 -7.4683 -1.7434 38 1 -3.7695 -8.0015 -5.7261 39 1 1.3736 -9.7440 -6.5574 40 1 1.3170 -9.2044 -4.1044 41 1 0.2189 -7.2324 1.0692 42 1 1.3616 -8.2496 0.1568 43 1 2.4114 -6.1374 1.0484 44 1 2.4904 -6.2613 -0.7258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206022880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:35 Heat of formation + Delta-G solvation = 35.283111 kcal Electronic energy + Delta-G solvation = -27413.313086 eV Core-core repulsion = 23650.227551 eV Total energy + Delta-G solvation = -3763.085534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.28531 -39.70405 -37.73412 -36.66612 -34.98886 -33.17782 -32.12812 -30.78022 -30.69221 -30.31410 -26.90819 -25.04879 -24.91375 -23.56898 -23.26825 -21.87729 -21.31924 -20.55521 -19.57171 -18.17568 -17.86581 -17.08470 -16.77090 -16.34653 -15.94101 -15.23940 -14.88047 -14.74695 -14.56214 -14.51285 -14.28593 -14.05465 -13.76249 -13.64878 -13.32045 -13.03991 -12.84969 -12.60626 -12.41460 -12.30306 -12.24616 -11.85379 -11.39528 -11.20036 -11.02010 -10.85492 -10.58272 -10.43985 -10.42069 -10.32291 -10.14996 -9.99889 -9.73790 -9.66655 -9.44878 -8.88639 -8.74345 -8.24204 -6.93003 -5.78228 -3.06406 -0.04761 0.41973 1.00159 1.43297 1.93285 2.43277 2.78574 3.34955 3.42454 3.47824 3.49323 3.93455 4.09338 4.20984 4.34508 4.57470 4.71008 4.76581 4.83955 4.93994 5.00542 5.05400 5.12836 5.18194 5.30857 5.43300 5.44466 5.52407 5.59731 5.69333 5.73338 5.82767 5.90080 5.91375 6.02640 6.06258 6.15234 6.24274 6.37069 6.43021 6.58980 6.77535 6.89056 7.19955 7.43464 7.68976 7.91316 8.41144 9.52314 10.10119 10.44838 11.44737 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013559 B = 0.002530 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.628443 B =11066.218650 C =11766.865035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.124 4.124 13 C 0.098 3.902 14 N -0.598 5.598 15 C 0.566 3.434 16 O -0.536 6.536 17 C -0.139 4.139 18 C 0.124 3.876 19 N -0.470 5.470 20 C 0.176 3.824 21 C -0.214 4.214 22 S 0.126 5.874 23 C -0.169 4.169 24 C -0.124 4.124 25 C 0.010 3.990 26 C 0.113 3.887 27 C -0.126 4.126 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.019 0.981 31 H 0.017 0.983 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.176 0.824 40 H 0.154 0.846 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 -21.720 -10.675 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.113 4.113 12 C -0.162 4.162 13 C -0.024 4.024 14 N -0.330 5.330 15 C 0.353 3.647 16 O -0.413 6.413 17 C -0.146 4.146 18 C -0.029 4.029 19 N -0.179 5.179 20 C 0.008 3.992 21 C -0.331 4.331 22 S 0.388 5.612 23 C -0.304 4.304 24 C -0.154 4.154 25 C -0.007 4.007 26 C -0.009 4.009 27 C -0.164 4.164 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.185 0.815 38 H 0.184 0.816 39 H 0.194 0.806 40 H 0.171 0.829 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.932 -21.979 -11.805 25.431 hybrid contribution 1.591 0.949 1.214 2.215 sum -3.341 -21.030 -10.591 23.782 Atomic orbital electron populations 1.69649 1.05069 1.25646 1.57913 1.24727 0.95533 0.97653 1.03089 0.86199 0.78664 0.83880 0.77511 1.21749 1.21761 1.20802 1.19226 0.91027 0.84225 1.42510 0.91286 1.42370 1.05811 0.99974 1.89475 1.20663 0.93144 0.85363 0.97754 1.21318 0.97887 0.94457 0.97640 1.21918 0.97906 0.98084 0.98288 1.22108 0.95270 0.83026 1.01994 1.48101 1.46480 1.12507 1.25953 1.17908 0.82191 0.83248 0.81352 1.90789 1.46154 1.31713 1.72682 1.20747 0.96506 1.04320 0.93056 1.22813 0.87996 0.93174 0.98887 1.67779 1.34939 1.15390 0.99763 1.22392 0.92004 0.90828 0.93959 1.23826 0.99987 1.10439 0.98866 1.84214 1.03600 1.66405 1.06955 1.25542 1.01735 1.05412 0.97738 1.19968 0.98145 1.01672 0.95606 1.18188 0.93289 0.97066 0.92142 1.21697 0.92490 1.00330 0.86365 1.21909 0.97714 0.93976 1.02837 0.93525 0.78268 0.96321 0.96482 0.90819 0.91830 0.89147 0.89948 0.90540 0.81524 0.81640 0.80647 0.82891 0.91075 0.89027 0.90450 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.04 5.32 -59.90 -0.32 -18.35 16 10 C 0.16 3.09 5.65 -4.04 -0.02 3.06 16 11 C -0.09 -1.41 2.19 -90.57 -0.20 -1.61 16 12 C -0.12 -1.79 5.25 -26.61 -0.14 -1.93 16 13 C 0.10 1.15 5.22 -3.71 -0.02 1.13 16 14 N -0.60 -7.28 2.97 -174.06 -0.52 -7.80 16 15 C 0.57 7.57 7.05 -12.55 -0.09 7.48 16 16 O -0.54 -8.49 15.69 5.26 0.08 -8.41 16 17 C -0.14 -1.69 4.90 -104.21 -0.51 -2.21 16 18 C 0.12 1.36 8.66 -17.33 -0.15 1.21 16 19 N -0.47 -5.21 10.32 -12.88 -0.13 -5.34 16 20 C 0.18 1.68 11.20 -17.23 -0.19 1.48 16 21 C -0.21 -2.16 6.52 -38.48 -0.25 -2.41 16 22 S 0.13 0.97 23.29 -107.50 -2.50 -1.53 16 23 C -0.17 -1.36 11.10 28.82 0.32 -1.04 16 24 C -0.12 -1.32 9.58 -40.83 -0.39 -1.71 16 25 C 0.01 0.11 5.86 -106.74 -0.63 -0.51 16 26 C 0.11 1.31 6.44 -3.71 -0.02 1.28 16 27 C -0.13 -1.56 5.36 -26.62 -0.14 -1.71 16 28 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.38 9.79 6.84 -40.82 -0.28 9.51 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.51 7.15 -51.93 -0.37 1.14 16 35 H 0.08 0.93 5.12 -51.93 -0.27 0.67 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.17 1.54 7.26 -52.49 -0.38 1.16 16 38 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.18 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.15 1.70 7.53 -52.48 -0.40 1.30 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.10 6.99 -51.93 -0.36 0.73 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -32.87 370.29 -10.62 -43.49 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.83 Total: 6.94 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -2.68 Total: -4.75 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.24 Total: -58.60 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.08 Total: -8.41 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.50 Total: -1.53 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.87 -10.62 -43.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206022880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.775 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds