Wall clock time and date at job start Wed Apr 1 2020 04:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46832 * 2 1 4 4 N 1.46502 * 109.47011 * 180.02562 * 3 2 1 5 5 C 1.36939 * 120.00134 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99379 * 359.97438 * 5 4 3 7 7 C 1.38808 * 119.99707 * 179.97438 * 5 4 3 8 8 N 1.31618 * 120.00390 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99624 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47069 * 60.00023 * 9 7 5 11 11 H 1.48503 * 109.47142 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47309 * 300.00390 * 9 7 5 13 13 N 1.46498 * 109.47244 * 119.99915 * 2 1 3 14 14 C 1.34778 * 119.99710 * 303.98002 * 13 2 1 15 15 O 1.21573 * 120.00381 * 355.32507 * 14 13 2 16 16 C 1.47665 * 119.99684 * 175.05444 * 14 13 2 17 17 C 1.40166 * 119.85504 * 359.72178 * 16 14 13 18 18 C 1.36213 * 120.07643 * 179.74012 * 17 16 14 19 19 C 1.39577 * 120.43686 * 0.55677 * 18 17 16 20 20 S 1.76151 * 131.53495 * 179.72058 * 19 18 17 21 21 C 1.70633 * 90.85760 * 179.97438 * 20 19 18 22 22 N 1.27848 * 111.58256 * 0.02562 * 21 20 19 23 23 C 1.34744 * 117.84993 * 359.97438 * 22 21 20 24 24 C 1.38715 * 119.85658 * 179.97438 * 16 14 13 25 25 C 1.52999 * 109.46948 * 239.99989 * 2 1 3 26 26 C 1.53005 * 117.50137 * 12.54140 * 25 2 1 27 27 C 1.52998 * 117.49858 * 303.88086 * 25 2 1 28 28 H 1.09001 * 109.46498 * 299.99847 * 1 2 3 29 29 H 1.08993 * 109.47057 * 60.00053 * 1 2 3 30 30 H 1.08995 * 109.47004 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47253 * 299.99833 * 3 2 1 32 32 H 1.08992 * 109.47272 * 60.00145 * 3 2 1 33 33 H 0.96998 * 119.99850 * 0.02562 * 4 3 2 34 34 H 0.97002 * 120.00006 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99830 * 123.97753 * 13 2 1 36 36 H 1.08000 * 119.96107 * 0.02562 * 17 16 14 37 37 H 1.08004 * 119.78175 * 180.25769 * 18 17 16 38 38 H 1.07993 * 124.20483 * 179.97438 * 21 20 19 39 39 H 1.07994 * 119.97437 * 359.95514 * 24 16 14 40 40 H 1.08996 * 115.54679 * 158.20840 * 25 2 1 41 41 H 1.09005 * 117.49427 * 359.97438 * 26 25 2 42 42 H 1.08997 * 117.50207 * 145.02040 * 26 25 2 43 43 H 1.09007 * 117.49648 * 214.97941 * 27 25 2 44 44 H 1.08998 * 117.49865 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1897 2.6285 -0.0013 6 1 3.6496 3.5638 -0.0017 7 6 5.5778 2.6284 -0.0013 8 7 6.2359 1.4886 -0.0012 9 14 6.5118 4.2462 -0.0029 10 1 6.1530 5.0261 1.2089 11 1 7.9718 3.9749 -0.0021 12 1 6.1529 5.0238 -1.2161 13 7 2.0184 -0.6906 1.1962 14 6 1.6280 -0.2787 2.4186 15 8 0.9396 0.7167 2.5336 16 6 2.0314 -1.0399 3.6179 17 6 2.8155 -2.1937 3.4809 18 6 3.1947 -2.8964 4.5845 19 6 2.7979 -2.4825 5.8571 20 16 3.1064 -3.1584 7.4542 21 6 2.1988 -1.9121 8.1852 22 7 1.7305 -1.0996 7.3162 23 6 2.0092 -1.3356 6.0192 24 6 1.6284 -0.6131 4.8747 25 6 2.0400 -0.7213 -1.2492 26 6 1.0265 -1.0199 -2.3559 27 6 1.5622 -2.1561 -1.4811 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.9900 0.6025 -0.0013 34 1 7.2059 1.4886 -0.0017 35 1 2.6227 -1.4442 1.1083 36 1 3.1233 -2.5233 2.4996 37 1 3.8023 -3.7823 4.4737 38 1 2.0391 -1.8214 9.2494 39 1 1.0215 0.2746 4.9741 40 1 3.0576 -0.4745 -1.5520 41 1 -0.0037 -0.7028 -2.1937 42 1 1.3774 -0.9700 -3.3866 43 1 2.2654 -2.8533 -1.9368 44 1 0.8849 -2.5864 -0.7434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267862552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:35 Heat of formation + Delta-G solvation = 72.631196 kcal Electronic energy + Delta-G solvation = -27784.030929 eV Core-core repulsion = 24022.564929 eV Total energy + Delta-G solvation = -3761.466000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.79777 -39.91460 -37.99332 -36.63997 -34.67065 -33.52281 -31.68405 -31.10405 -30.20239 -29.29061 -25.91236 -25.37418 -24.33168 -23.15428 -22.38874 -22.17912 -22.05710 -20.08517 -18.93667 -18.78940 -17.40340 -17.14738 -16.49133 -16.27351 -15.62645 -15.18608 -15.08276 -14.75364 -14.43506 -14.37468 -14.07700 -13.95184 -13.71439 -13.22838 -13.18988 -12.68883 -12.38035 -12.25955 -12.08446 -12.01809 -11.86368 -11.38024 -11.23341 -11.06602 -10.83861 -10.77451 -10.73008 -10.29607 -10.20104 -10.09726 -9.91700 -9.84018 -9.64153 -9.44368 -8.98833 -8.76391 -8.62131 -8.32344 -6.81691 -5.71372 -2.97197 0.17948 0.65809 0.98759 1.44365 2.06876 2.96994 3.19743 3.48405 3.52148 3.53931 3.79450 3.80662 4.09640 4.36543 4.64757 4.71210 4.77217 4.82521 4.92166 5.04821 5.08516 5.17850 5.24288 5.36935 5.45959 5.63306 5.65125 5.71444 5.77881 5.86616 5.92718 5.97394 6.05017 6.07961 6.21831 6.25227 6.28560 6.36429 6.45500 6.56263 6.69411 6.91890 7.11760 7.32376 7.76877 7.85004 8.48453 8.52089 9.59936 10.17757 10.53645 11.51847 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009133 B = 0.003499 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.206948 B = 8000.637128 C = 9807.033732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.203 3.797 3 C 0.144 3.856 4 N -0.726 5.726 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.937 5.937 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.701 5.701 14 C 0.566 3.434 15 O -0.526 6.526 16 C -0.111 4.111 17 C -0.065 4.065 18 C -0.078 4.078 19 C -0.162 4.162 20 S 0.095 5.905 21 C 0.063 3.937 22 N -0.456 5.456 23 C 0.067 3.933 24 C 0.002 3.998 25 C -0.150 4.150 26 C -0.172 4.172 27 C -0.184 4.184 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.024 0.976 32 H 0.046 0.954 33 H 0.381 0.619 34 H 0.253 0.747 35 H 0.397 0.603 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.205 0.795 39 H 0.150 0.850 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.837 -15.652 9.107 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.117 3.883 3 C 0.016 3.984 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.587 5.587 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.352 5.352 14 C 0.352 3.648 15 O -0.404 6.404 16 C -0.117 4.117 17 C -0.087 4.087 18 C -0.101 4.101 19 C -0.282 4.282 20 S 0.348 5.652 21 C -0.243 4.243 22 N -0.168 5.168 23 C -0.052 4.052 24 C -0.020 4.020 25 C -0.169 4.169 26 C -0.209 4.209 27 C -0.221 4.221 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.215 0.785 34 H 0.063 0.937 35 H 0.233 0.767 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.221 0.779 39 H 0.168 0.832 40 H 0.141 0.859 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.118 -15.127 9.839 20.689 hybrid contribution 1.027 0.781 -0.602 1.423 sum -9.092 -14.347 9.238 19.335 Atomic orbital electron populations 1.22291 0.94578 1.01699 1.03741 1.20060 0.93156 0.93189 0.81856 1.21076 0.86473 0.91602 0.99298 1.42217 0.99169 1.06145 1.89458 1.19197 0.89016 0.86224 1.41735 0.91401 1.24655 0.96274 0.96657 1.03441 1.69630 1.06660 1.23828 1.58538 0.86299 0.78908 0.83370 0.77841 1.21398 1.21795 1.21362 1.45806 1.49276 1.35085 1.05000 1.17813 0.80198 0.83979 0.82761 1.90730 1.38675 1.24821 1.86155 1.19863 1.01096 0.96905 0.93833 1.21037 0.95186 0.93422 0.99104 1.19959 1.00476 1.00786 0.88856 1.24049 1.04875 1.00485 0.98754 1.83976 1.53936 1.30706 0.96573 1.28081 0.98257 0.93922 1.04038 1.66188 1.22182 1.28174 1.00222 1.19081 1.00285 0.95216 0.90618 1.20753 0.95543 0.97756 0.87900 1.22574 1.00850 0.96933 0.96557 1.23060 0.99249 1.02704 0.95877 1.22960 1.04032 0.91539 1.03535 0.90110 0.91439 0.92901 0.95799 0.93652 0.78473 0.93702 0.76735 0.84151 0.84537 0.77893 0.83189 0.85908 0.88233 0.88864 0.88918 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 6.98 37.16 0.26 -2.10 16 2 C 0.20 3.28 0.54 -131.82 -0.07 3.21 16 3 C 0.14 3.05 5.02 -4.04 -0.02 3.03 16 4 N -0.73 -18.28 5.04 -59.91 -0.30 -18.58 16 5 C -0.23 -6.58 9.99 -15.06 -0.15 -6.73 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 7 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 8 N -0.94 -28.10 13.06 55.49 0.72 -27.37 16 9 Si 0.90 22.97 29.55 -169.99 -5.02 17.95 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 13 N -0.70 -10.78 4.67 -48.59 -0.23 -11.01 16 14 C 0.57 9.59 7.17 -12.41 -0.09 9.50 16 15 O -0.53 -10.47 12.53 5.30 0.07 -10.40 16 16 C -0.11 -1.63 5.86 -105.15 -0.62 -2.24 16 17 C -0.07 -0.77 9.47 -39.59 -0.37 -1.15 16 18 C -0.08 -0.85 9.99 -39.81 -0.40 -1.25 16 19 C -0.16 -1.96 6.57 -38.37 -0.25 -2.21 16 20 S 0.09 0.85 23.17 -107.50 -2.49 -1.64 16 21 C 0.06 0.59 12.10 51.10 0.62 1.21 16 22 N -0.46 -6.04 10.57 -13.03 -0.14 -6.17 16 23 C 0.07 0.95 6.99 -84.99 -0.59 0.35 16 24 C 0.00 0.03 9.65 -38.51 -0.37 -0.34 16 25 C -0.15 -2.21 4.84 -90.62 -0.44 -2.64 16 26 C -0.17 -2.07 9.64 -26.69 -0.26 -2.33 16 27 C -0.18 -2.08 9.81 -26.69 -0.26 -2.34 16 28 H 0.08 1.31 6.04 -51.93 -0.31 1.00 16 29 H 0.07 0.89 6.79 -51.93 -0.35 0.54 16 30 H 0.05 0.66 6.99 -51.93 -0.36 0.29 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 1.08 6.30 -51.93 -0.33 0.75 16 33 H 0.38 9.78 6.62 -40.82 -0.27 9.51 16 34 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.40 5.27 6.48 -40.82 -0.26 5.01 16 36 H 0.14 1.33 6.39 -52.49 -0.34 1.00 16 37 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.15 2.34 7.60 -52.49 -0.40 1.94 16 40 H 0.12 2.18 7.08 -51.93 -0.37 1.81 16 41 H 0.10 1.12 5.88 -51.93 -0.31 0.81 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.09 0.96 7.36 -51.93 -0.38 0.58 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -34.21 370.24 -10.26 -44.47 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -5.34 Total: 13.76 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -3.11 Total: -6.58 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: 0.06 Total: -63.14 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.49 Total: -1.64 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.21 -10.26 -44.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267862552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.103 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds