Wall clock time and date at job start Wed Apr 1 2020 04:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46832 * 2 1 4 4 N 1.46502 * 109.47011 * 180.02562 * 3 2 1 5 5 C 1.36939 * 120.00134 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99379 * 359.97438 * 5 4 3 7 7 C 1.38808 * 119.99707 * 179.97438 * 5 4 3 8 8 N 1.31618 * 120.00390 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99624 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47069 * 60.00023 * 9 7 5 11 11 H 1.48503 * 109.47142 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47309 * 300.00390 * 9 7 5 13 13 N 1.46498 * 109.47244 * 119.99915 * 2 1 3 14 14 C 1.34778 * 119.99710 * 303.98002 * 13 2 1 15 15 O 1.21573 * 120.00381 * 355.32507 * 14 13 2 16 16 C 1.47665 * 119.99684 * 175.05444 * 14 13 2 17 17 C 1.40166 * 119.85504 * 359.72178 * 16 14 13 18 18 C 1.36213 * 120.07643 * 179.74012 * 17 16 14 19 19 C 1.39577 * 120.43686 * 0.55677 * 18 17 16 20 20 S 1.76151 * 131.53495 * 179.72058 * 19 18 17 21 21 C 1.70633 * 90.85760 * 179.97438 * 20 19 18 22 22 N 1.27848 * 111.58256 * 0.02562 * 21 20 19 23 23 C 1.34744 * 117.84993 * 359.97438 * 22 21 20 24 24 C 1.38715 * 119.85658 * 179.97438 * 16 14 13 25 25 C 1.52999 * 109.46948 * 239.99989 * 2 1 3 26 26 C 1.53005 * 117.50137 * 12.54140 * 25 2 1 27 27 C 1.52998 * 117.49858 * 303.88086 * 25 2 1 28 28 H 1.09001 * 109.46498 * 299.99847 * 1 2 3 29 29 H 1.08993 * 109.47057 * 60.00053 * 1 2 3 30 30 H 1.08995 * 109.47004 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47253 * 299.99833 * 3 2 1 32 32 H 1.08992 * 109.47272 * 60.00145 * 3 2 1 33 33 H 0.96998 * 119.99850 * 0.02562 * 4 3 2 34 34 H 0.97002 * 120.00006 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99830 * 123.97753 * 13 2 1 36 36 H 1.08000 * 119.96107 * 0.02562 * 17 16 14 37 37 H 1.08004 * 119.78175 * 180.25769 * 18 17 16 38 38 H 1.07993 * 124.20483 * 179.97438 * 21 20 19 39 39 H 1.07994 * 119.97437 * 359.95514 * 24 16 14 40 40 H 1.08996 * 115.54679 * 158.20840 * 25 2 1 41 41 H 1.09005 * 117.49427 * 359.97438 * 26 25 2 42 42 H 1.08997 * 117.50207 * 145.02040 * 26 25 2 43 43 H 1.09007 * 117.49648 * 214.97941 * 27 25 2 44 44 H 1.08998 * 117.49865 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1897 2.6285 -0.0013 6 1 3.6496 3.5638 -0.0017 7 6 5.5778 2.6284 -0.0013 8 7 6.2359 1.4886 -0.0012 9 14 6.5118 4.2462 -0.0029 10 1 6.1530 5.0261 1.2089 11 1 7.9718 3.9749 -0.0021 12 1 6.1529 5.0238 -1.2161 13 7 2.0184 -0.6906 1.1962 14 6 1.6280 -0.2787 2.4186 15 8 0.9396 0.7167 2.5336 16 6 2.0314 -1.0399 3.6179 17 6 2.8155 -2.1937 3.4809 18 6 3.1947 -2.8964 4.5845 19 6 2.7979 -2.4825 5.8571 20 16 3.1064 -3.1584 7.4542 21 6 2.1988 -1.9121 8.1852 22 7 1.7305 -1.0996 7.3162 23 6 2.0092 -1.3356 6.0192 24 6 1.6284 -0.6131 4.8747 25 6 2.0400 -0.7213 -1.2492 26 6 1.0265 -1.0199 -2.3559 27 6 1.5622 -2.1561 -1.4811 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.9900 0.6025 -0.0013 34 1 7.2059 1.4886 -0.0017 35 1 2.6227 -1.4442 1.1083 36 1 3.1233 -2.5233 2.4996 37 1 3.8023 -3.7823 4.4737 38 1 2.0391 -1.8214 9.2494 39 1 1.0215 0.2746 4.9741 40 1 3.0576 -0.4745 -1.5520 41 1 -0.0037 -0.7028 -2.1937 42 1 1.3774 -0.9700 -3.3866 43 1 2.2654 -2.8533 -1.9368 44 1 0.8849 -2.5864 -0.7434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267862552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:33 Heat of formation + Delta-G solvation = 49.819490 kcal Electronic energy + Delta-G solvation = -27785.020119 eV Core-core repulsion = 24022.564929 eV Total energy + Delta-G solvation = -3762.455190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.88037 -41.04610 -39.15787 -37.65151 -36.36366 -35.07706 -33.23626 -32.32603 -31.57972 -30.47236 -27.60028 -26.30390 -25.62245 -24.53463 -23.94246 -23.21689 -23.06736 -21.19737 -20.22964 -19.76777 -19.24275 -18.44699 -17.45407 -17.33207 -16.82685 -16.66100 -16.26066 -16.10414 -15.86791 -15.59117 -15.30305 -15.02257 -14.96286 -14.83428 -14.31582 -14.09271 -13.82275 -13.67563 -13.27206 -13.10412 -13.06739 -12.91316 -12.77892 -12.46192 -12.25486 -12.16367 -12.02928 -12.00819 -11.75520 -11.25418 -11.21247 -11.06502 -10.92647 -10.73774 -10.65969 -10.05058 -9.85190 -9.18400 -8.94071 -7.95316 -5.20878 -0.69657 -0.37822 0.19776 0.62921 1.19407 1.43312 1.46150 1.51970 1.82225 2.02632 2.54698 2.69434 2.93655 3.09315 3.37248 3.46077 3.59469 3.69698 3.90465 3.94051 3.96102 4.08354 4.12229 4.19237 4.26794 4.43280 4.47937 4.59190 4.68771 4.81145 4.87488 4.89262 4.95628 4.98220 5.00939 5.05229 5.09544 5.14692 5.30515 5.35919 5.43997 5.45694 5.48977 5.65484 6.27542 6.49159 6.61038 7.24883 7.35136 8.09637 8.38855 9.27381 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009133 B = 0.003499 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.206948 B = 8000.637128 C = 9807.033732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.211 3.789 3 C 0.145 3.855 4 N -0.728 5.728 5 C -0.247 4.247 6 H 0.061 0.939 7 C -0.066 4.066 8 N -0.961 5.961 9 Si 0.965 3.035 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.692 5.692 14 C 0.559 3.441 15 O -0.567 6.567 16 C -0.124 4.124 17 C -0.070 4.070 18 C -0.067 4.067 19 C -0.185 4.185 20 S 0.165 5.835 21 C 0.070 3.930 22 N -0.502 5.502 23 C 0.050 3.950 24 C -0.024 4.024 25 C -0.176 4.176 26 C -0.164 4.164 27 C -0.153 4.153 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.020 0.980 32 H 0.016 0.984 33 H 0.378 0.622 34 H 0.251 0.749 35 H 0.408 0.592 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.244 0.756 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.380 -18.470 9.615 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.126 3.874 3 C 0.017 3.983 4 N -0.371 5.371 5 C -0.379 4.379 6 H 0.079 0.921 7 C -0.259 4.259 8 N -0.612 5.612 9 Si 0.795 3.205 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.343 5.343 14 C 0.347 3.653 15 O -0.447 6.447 16 C -0.130 4.130 17 C -0.092 4.092 18 C -0.089 4.089 19 C -0.304 4.304 20 S 0.419 5.581 21 C -0.235 4.235 22 N -0.216 5.216 23 C -0.069 4.069 24 C -0.046 4.046 25 C -0.195 4.195 26 C -0.201 4.201 27 C -0.190 4.190 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.211 0.789 34 H 0.060 0.940 35 H 0.246 0.754 36 H 0.181 0.819 37 H 0.191 0.809 38 H 0.260 0.740 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.669 -17.976 10.341 22.882 hybrid contribution 0.887 1.614 -0.620 1.943 sum -8.782 -16.362 9.722 20.960 Atomic orbital electron populations 1.22212 0.92830 1.03193 1.03152 1.19871 0.94253 0.90263 0.83040 1.21105 0.84365 0.95389 0.97422 1.42260 1.00672 1.05044 1.89131 1.19505 0.89733 0.87202 1.41427 0.92055 1.25372 0.96968 0.99804 1.03716 1.69758 1.06573 1.25428 1.59393 0.85340 0.77509 0.79801 0.77877 1.21398 1.21490 1.20406 1.45762 1.49088 1.35014 1.04441 1.18276 0.79561 0.83654 0.83777 1.90704 1.40559 1.26676 1.86798 1.19757 1.02586 0.98134 0.92508 1.21256 0.94708 0.92448 1.00800 1.20376 0.99437 1.01170 0.87946 1.24481 1.04491 1.00290 1.01150 1.83736 1.52216 1.28798 0.93346 1.28860 0.96267 0.92931 1.05397 1.66225 1.24614 1.30363 1.00349 1.19148 1.00949 0.95988 0.90804 1.20652 0.96799 0.97956 0.89168 1.22238 0.99934 1.00325 0.96996 1.23192 0.98970 1.02402 0.95526 1.23059 1.03360 0.89844 1.02766 0.92484 0.90255 0.90239 0.96250 0.96637 0.78850 0.93977 0.75437 0.81874 0.80935 0.73996 0.85624 0.89322 0.87042 0.88246 0.87493 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 6.98 71.99 0.50 -3.92 16 2 C 0.21 6.96 0.54 3.61 0.00 6.96 16 3 C 0.14 6.46 5.02 86.38 0.43 6.90 16 4 N -0.73 -38.17 5.04 -343.45 -1.73 -39.90 16 5 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 6 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 7 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 8 N -0.96 -58.41 13.06 21.65 0.28 -58.13 16 9 Si 0.97 47.84 29.55 68.60 2.03 49.87 16 10 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 11 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 N -0.69 -21.72 4.67 -425.92 -1.99 -23.71 16 14 C 0.56 20.02 7.17 86.73 0.62 20.65 16 15 O -0.57 -24.46 12.53 -3.95 -0.05 -24.51 16 16 C -0.12 -3.80 5.86 -20.21 -0.12 -3.92 16 17 C -0.07 -1.59 9.47 22.27 0.21 -1.38 16 18 C -0.07 -1.32 9.99 22.12 0.22 -1.10 16 19 C -0.18 -4.18 6.57 23.05 0.15 -4.02 16 20 S 0.16 2.43 23.17 -56.49 -1.31 1.12 16 21 C 0.07 1.16 12.10 130.82 1.58 2.74 16 22 N -0.50 -13.25 10.57 -194.91 -2.06 -15.31 16 23 C 0.05 1.45 6.99 39.73 0.28 1.73 16 24 C -0.02 -0.78 9.65 22.96 0.22 -0.56 16 25 C -0.18 -5.06 4.84 -10.79 -0.05 -5.11 16 26 C -0.16 -3.60 9.64 30.62 0.30 -3.31 16 27 C -0.15 -3.04 9.81 30.62 0.30 -2.74 16 28 H 0.06 1.93 6.04 -2.39 -0.01 1.91 16 29 H 0.08 2.03 6.79 -2.39 -0.02 2.01 16 30 H 0.08 1.82 6.99 -2.39 -0.02 1.81 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.02 0.80 6.30 -2.39 -0.02 0.78 16 33 H 0.38 20.09 6.62 -92.71 -0.61 19.48 16 34 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 35 H 0.41 10.69 6.48 -92.71 -0.60 10.09 16 36 H 0.16 2.80 6.39 -2.91 -0.02 2.79 16 37 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.24 1.70 8.06 -2.91 -0.02 1.67 16 39 H 0.13 4.50 7.60 -2.91 -0.02 4.48 16 40 H 0.09 3.21 7.08 -2.39 -0.02 3.20 16 41 H 0.11 2.20 5.88 -2.38 -0.01 2.18 16 42 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.11 1.84 7.36 -2.39 -0.02 1.82 16 Total: -1.00 -78.47 370.24 0.99 -77.49 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -0.14 Total: 37.29 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 5.96 Total: -4.20 kcal Atomic # 7 Polarization: -131.56 SS G_CDS: -5.50 Total: -137.06 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.05 Total: -24.51 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.31 Total: 1.12 kcal Total: -78.47 0.99 -77.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267862552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.307 kcal (2) G-P(sol) polarization free energy of solvation -78.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds