Wall clock time and date at job start Wed Apr 1 2020 03:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38262 * 119.99880 * 265.00270 * 3 2 1 5 5 C 1.38207 * 119.99901 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.00007 * 359.97438 * 5 4 3 7 7 C 1.38205 * 120.00194 * 359.95451 * 6 5 4 8 8 C 1.38210 * 119.99959 * 84.73029 * 3 2 1 9 9 C 1.50699 * 120.00166 * 359.97438 * 8 3 2 10 10 H 1.08999 * 109.47290 * 325.00380 * 9 8 3 11 11 C 1.53004 * 109.46691 * 85.00539 * 9 8 3 12 12 N 1.46503 * 109.46952 * 175.00076 * 11 9 8 13 13 C 1.34784 * 119.99706 * 179.97438 * 12 11 9 14 14 O 1.21627 * 119.99911 * 0.02562 * 13 12 11 15 15 C 1.47263 * 119.99473 * 179.97438 * 13 12 11 16 16 C 1.35204 * 123.14074 * 179.97438 * 15 13 12 17 17 S 1.70941 * 108.83352 * 179.97438 * 16 15 13 18 18 C 1.70773 * 91.12522 * 359.97438 * 17 16 15 19 19 N 1.28649 * 110.56191 * 359.76864 * 18 17 16 20 20 N 1.46496 * 109.47299 * 205.00011 * 9 8 3 21 21 C 1.36941 * 120.00039 * 85.00432 * 20 9 8 22 22 H 1.08003 * 119.99785 * 0.02562 * 21 20 9 23 23 C 1.38805 * 120.00347 * 179.97438 * 21 20 9 24 24 N 1.31614 * 120.00234 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99871 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47062 * 89.99793 * 25 23 21 27 27 H 1.48501 * 109.46848 * 209.99498 * 25 23 21 28 28 H 1.48496 * 109.47107 * 329.99579 * 25 23 21 29 29 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 34 34 H 1.07997 * 119.99789 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.00136 * 179.97438 * 5 4 3 36 36 H 1.07998 * 119.99690 * 179.97438 * 6 5 4 37 37 H 1.07996 * 120.00611 * 180.02562 * 7 6 5 38 38 H 1.09004 * 109.46623 * 294.99626 * 11 9 8 39 39 H 1.08994 * 109.47731 * 54.99949 * 11 9 8 40 40 H 0.96996 * 119.99992 * 0.02562 * 12 11 9 41 41 H 1.08006 * 125.58524 * 359.96882 * 16 15 13 42 42 H 1.08002 * 124.71878 * 179.97438 * 18 17 16 43 43 H 0.96999 * 120.00477 * 265.00144 * 20 9 8 44 44 H 0.97004 * 120.00723 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3610 2.0379 -1.1928 5 6 2.8222 3.3407 -1.1928 6 6 2.9543 4.0273 0.0000 7 6 2.6243 3.4110 1.1923 8 6 2.1590 2.1090 1.1919 9 6 1.7943 1.4388 2.4914 10 1 0.9464 0.7728 2.3314 11 6 2.9890 0.6301 3.0009 12 7 2.6766 0.0762 4.3207 13 6 3.5875 -0.6774 4.9681 14 8 4.6690 -0.8971 4.4567 15 6 3.2737 -1.2336 6.2950 16 6 4.1386 -1.9972 6.9998 17 16 3.4043 -2.4415 8.4782 18 6 1.9860 -1.5821 8.0708 19 7 2.1104 -1.0257 6.9175 20 7 1.4356 2.4567 3.4820 21 6 0.1578 2.9470 3.5281 22 1 -0.5856 2.5829 2.8344 23 6 -0.1823 3.9110 4.4671 24 7 -1.4103 4.3826 4.5110 25 14 1.1033 4.5402 5.6675 26 1 1.7972 5.7140 5.0794 27 1 0.4425 4.9401 6.9358 28 1 2.0921 3.4667 5.9414 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.2582 1.5014 -2.1245 35 1 3.0794 3.8226 -2.1245 36 1 3.3150 5.0452 0.0000 37 1 2.7270 3.9474 2.1240 38 1 3.2000 -0.1831 2.3063 39 1 3.8615 1.2790 3.0765 40 1 1.8140 0.2512 4.7283 41 1 5.1310 -2.2803 6.6810 42 1 1.1080 -1.5124 8.6959 43 1 2.1031 2.7834 4.1054 44 1 -1.6479 5.0566 5.1669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271437936.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:51 Heat of formation + Delta-G solvation = 45.431884 kcal Electronic energy + Delta-G solvation = -27795.815912 eV Core-core repulsion = 24033.170461 eV Total energy + Delta-G solvation = -3762.645451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.46399 -39.48678 -38.44237 -36.06595 -33.88927 -33.67856 -31.90240 -30.77122 -29.95111 -29.10535 -28.05198 -25.83108 -24.01449 -23.28579 -22.91173 -22.05103 -20.50586 -20.02812 -19.56709 -18.90229 -17.82299 -16.62366 -16.22040 -15.84305 -15.76612 -15.29928 -15.19707 -14.58960 -14.34448 -14.10408 -13.89048 -13.52242 -13.44747 -13.23802 -13.22339 -12.97936 -12.84103 -12.61206 -12.40924 -12.11451 -11.80722 -11.49872 -11.36530 -11.00333 -10.91581 -10.80181 -10.48940 -10.40163 -10.10727 -10.08545 -9.94852 -9.90049 -9.63580 -9.23261 -9.08021 -8.76406 -8.29081 -8.11515 -7.40732 -5.82663 -3.21038 0.38719 1.08624 1.43135 1.80870 1.91016 1.95464 3.32983 3.36807 3.38871 3.42314 3.44810 4.06027 4.23527 4.53140 4.88328 5.02913 5.04772 5.13938 5.16118 5.21213 5.32156 5.42271 5.46454 5.53765 5.59704 5.67804 5.73202 5.75686 5.82181 5.95454 6.00493 6.04778 6.17362 6.29221 6.35671 6.45864 6.60089 6.65471 6.65565 6.93606 7.03522 7.23984 7.26123 7.51195 7.80812 7.90862 8.34065 8.35491 9.10910 9.82943 10.00283 11.35027 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009219 B = 0.003948 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.415252 B = 7090.339938 C = 8858.791262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.082 4.082 4 C -0.127 4.127 5 C -0.128 4.128 6 C -0.132 4.132 7 C -0.079 4.079 8 C -0.081 4.081 9 C 0.203 3.797 10 H 0.080 0.920 11 C 0.115 3.885 12 N -0.696 5.696 13 C 0.589 3.411 14 O -0.546 6.546 15 C 0.011 3.989 16 C -0.225 4.225 17 S 0.195 5.805 18 C 0.004 3.996 19 N -0.433 5.433 20 N -0.739 5.739 21 C -0.244 4.244 22 H 0.092 0.908 23 C 0.014 3.986 24 N -0.928 5.928 25 Si 0.876 3.124 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.276 1.276 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.420 0.580 41 H 0.189 0.811 42 H 0.206 0.794 43 H 0.363 0.637 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.229 -13.349 1.057 16.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.082 4.082 4 C -0.145 4.145 5 C -0.147 4.147 6 C -0.150 4.150 7 C -0.098 4.098 8 C -0.085 4.085 9 C 0.092 3.908 10 H 0.098 0.902 11 C -0.010 4.010 12 N -0.347 5.347 13 C 0.372 3.628 14 O -0.425 6.425 15 C -0.124 4.124 16 C -0.367 4.367 17 S 0.449 5.551 18 C -0.296 4.296 19 N -0.147 5.147 20 N -0.382 5.382 21 C -0.373 4.373 22 H 0.110 0.890 23 C -0.182 4.182 24 N -0.575 5.575 25 Si 0.706 3.294 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.202 1.202 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.258 0.742 41 H 0.206 0.794 42 H 0.223 0.777 43 H 0.197 0.803 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.522 -13.673 1.296 16.712 hybrid contribution 0.499 1.342 0.203 1.446 sum 10.021 -12.330 1.498 15.959 Atomic orbital electron populations 1.21767 0.94655 1.01278 1.02890 1.20565 0.96392 0.93018 1.02267 1.19712 0.99651 0.96037 0.92827 1.20850 1.01375 0.95292 0.96988 1.20969 1.01181 0.94938 0.97577 1.21092 1.01536 0.99533 0.92850 1.21018 0.96176 0.94512 0.98051 1.20669 0.97497 0.94960 0.95368 1.19461 0.94618 0.90174 0.86525 0.90228 1.21737 0.98597 0.97363 0.83263 1.45861 1.19347 1.49974 1.19546 1.17062 0.84170 0.78718 0.82896 1.90789 1.23321 1.60945 1.67398 1.20597 0.90396 1.02917 0.98512 1.26600 1.06609 1.04233 0.99258 1.82854 1.08646 1.47496 1.16058 1.28541 1.03638 1.00360 0.97096 1.67006 1.20536 1.19776 1.07415 1.42809 1.10766 1.46977 1.37627 1.18978 0.85940 1.17483 1.14935 0.89021 1.24601 0.95832 0.98908 0.98882 1.69684 1.17261 1.32495 1.38039 0.86688 0.81775 0.79068 0.81835 1.21133 1.21719 1.20196 0.91519 0.92814 0.92854 0.91035 0.91677 0.86957 0.87021 0.86880 0.85801 0.90779 0.91378 0.74157 0.79397 0.77732 0.80318 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.72 37.16 0.36 -1.67 16 2 C -0.09 -1.14 5.38 -27.88 -0.15 -1.29 16 3 C -0.08 -1.29 5.13 -104.62 -0.54 -1.82 16 4 C -0.13 -1.86 9.68 -39.58 -0.38 -2.24 16 5 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 6 C -0.13 -2.15 10.05 -39.58 -0.40 -2.54 16 7 C -0.08 -1.46 9.32 -39.58 -0.37 -1.83 16 8 C -0.08 -1.45 5.02 -104.62 -0.53 -1.98 16 9 C 0.20 3.70 1.97 -69.08 -0.14 3.56 16 10 H 0.08 1.48 5.54 -51.93 -0.29 1.19 16 11 C 0.11 1.92 5.08 -4.04 -0.02 1.90 16 12 N -0.70 -11.93 5.38 -61.43 -0.33 -12.26 16 13 C 0.59 10.08 7.80 -12.59 -0.10 9.98 16 14 O -0.55 -10.29 16.71 5.25 0.09 -10.21 16 15 C 0.01 0.16 6.70 -84.53 -0.57 -0.41 16 16 C -0.22 -2.61 10.62 29.65 0.31 -2.29 16 17 S 0.20 1.59 22.97 -107.50 -2.47 -0.88 16 18 C 0.00 0.04 12.17 51.43 0.63 0.66 16 19 N -0.43 -6.25 10.12 -12.36 -0.13 -6.38 16 20 N -0.74 -16.13 3.11 -54.55 -0.17 -16.30 16 21 C -0.24 -6.41 10.40 -15.06 -0.16 -6.57 16 22 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 23 C 0.01 0.40 5.50 -17.44 -0.10 0.30 16 24 N -0.93 -28.17 13.97 55.49 0.78 -27.39 16 25 Si 0.88 21.54 27.74 -169.99 -4.71 16.83 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 29 H 0.07 1.07 6.77 -51.93 -0.35 0.72 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.95 5.59 -51.93 -0.29 0.66 16 33 H 0.06 0.75 8.05 -51.93 -0.42 0.34 16 34 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.12 2.44 7.27 -52.49 -0.38 2.06 16 38 H 0.07 1.15 6.71 -51.93 -0.35 0.81 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.42 7.58 7.66 -40.82 -0.31 7.26 16 41 H 0.19 1.95 8.03 -52.48 -0.42 1.53 16 42 H 0.21 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.36 8.06 5.66 -40.82 -0.23 7.83 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -32.53 379.63 -9.35 -41.88 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -5.59 Total: 17.52 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -2.53 Total: -8.53 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.15 Total: -62.33 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.83 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.47 Total: -0.88 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.53 -9.35 -41.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271437936.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.312 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds