Wall clock time and date at job start Wed Apr 1 2020 03:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86809 * 120.00018 * 2 1 4 4 H 1.48501 * 109.46904 * 270.00118 * 3 2 1 5 5 H 1.48503 * 109.46811 * 29.99817 * 3 2 1 6 6 H 1.48504 * 109.47055 * 149.99933 * 3 2 1 7 7 C 1.38814 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00261 * 185.51388 * 7 2 1 9 9 N 1.36937 * 119.99478 * 5.52073 * 7 2 1 10 10 C 1.46505 * 119.99954 * 185.36477 * 9 7 2 11 11 C 1.52995 * 109.47016 * 185.48820 * 10 9 7 12 12 N 1.46499 * 109.54185 * 299.58499 * 11 10 9 13 13 C 1.34780 * 120.00390 * 298.86641 * 12 11 10 14 14 O 1.21684 * 119.99623 * 5.17436 * 13 12 11 15 15 C 1.46723 * 120.00103 * 185.17274 * 13 12 11 16 16 O 1.35336 * 126.64213 * 353.98903 * 15 13 12 17 17 C 1.33672 * 107.68377 * 179.97438 * 16 15 13 18 18 N 1.30628 * 109.15173 * 359.97438 * 17 16 15 19 19 C 1.33688 * 108.99302 * 0.02562 * 18 17 16 20 20 C 1.50698 * 126.27169 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47166 * 17.16413 * 20 19 18 22 22 F 1.39897 * 109.47555 * 137.16403 * 20 19 18 23 23 C 1.53178 * 109.54698 * 59.76678 * 11 10 9 24 24 C 1.53281 * 109.06041 * 176.85260 * 23 11 10 25 25 O 1.42900 * 109.46118 * 302.43856 * 24 23 11 26 26 C 1.42904 * 114.09389 * 61.16328 * 25 24 23 27 27 C 1.53087 * 109.41853 * 298.84143 * 26 25 24 28 28 H 0.97002 * 119.99852 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00349 * 5.37328 * 9 7 2 30 30 H 1.09002 * 109.46463 * 65.48621 * 10 9 7 31 31 H 1.09002 * 109.46730 * 305.48847 * 10 9 7 32 32 H 0.96997 * 119.99792 * 118.86858 * 12 11 10 33 33 H 1.07996 * 125.42455 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47450 * 257.16520 * 20 19 18 35 35 H 1.08995 * 109.51844 * 296.83856 * 23 11 10 36 36 H 1.08997 * 109.52080 * 57.02440 * 23 11 10 37 37 H 1.09004 * 109.45031 * 182.44811 * 24 23 11 38 38 H 1.08992 * 109.47321 * 62.44758 * 24 23 11 39 39 H 1.09003 * 109.47849 * 178.85657 * 26 25 24 40 40 H 1.09000 * 109.49164 * 58.83416 * 26 25 24 41 41 H 1.09009 * 109.52206 * 297.70366 * 27 26 25 42 42 H 1.09001 * 109.57883 * 177.55126 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0865 -1.2042 0.0904 9 7 1.3304 -2.3853 -0.1130 10 6 2.0482 -3.6570 0.0053 11 6 1.0912 -4.8125 -0.2940 12 7 -0.0142 -4.7949 0.6671 13 6 0.2352 -4.9380 1.9839 14 8 1.3834 -4.9873 2.3837 15 6 -0.8777 -5.0343 2.9352 16 8 -2.1935 -4.8827 2.6570 17 6 -2.8713 -5.0480 3.7972 18 7 -2.0289 -5.2953 4.7645 19 6 -0.7867 -5.2947 4.2704 20 6 0.4818 -5.5382 5.0468 21 9 0.1715 -6.1450 6.2686 22 9 1.3255 -6.3768 4.3107 23 6 0.5376 -4.6646 -1.7146 24 6 -0.3571 -5.8683 -2.0310 25 8 0.3957 -7.0736 -1.8810 26 6 0.8987 -7.2867 -0.5605 27 6 1.8437 -6.1423 -0.1850 28 1 -0.4850 0.8401 -0.0004 29 1 0.3735 -2.3815 -0.2720 30 1 2.4381 -3.7610 1.0179 31 1 2.8740 -3.6755 -0.7058 32 1 -0.9257 -4.6802 0.3559 33 1 -3.9444 -4.9877 3.9019 34 1 0.9837 -4.5881 5.2302 35 1 -0.0454 -3.7463 -1.7844 36 1 1.3632 -4.6279 -2.4253 37 1 -0.7198 -5.7914 -3.0561 38 1 -1.2045 -5.8813 -1.3456 39 1 1.4407 -8.2318 -0.5262 40 1 0.0680 -7.3183 0.1444 41 1 2.6957 -6.1354 -0.8650 42 1 2.1951 -6.2794 0.8377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274002262.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:30 Heat of formation + Delta-G solvation = -132.399039 kcal Electronic energy + Delta-G solvation = -32371.866095 eV Core-core repulsion = 27604.526916 eV Total energy + Delta-G solvation = -4767.339179 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.93150 -46.93150 -43.74003 -40.62664 -38.46524 -35.99210 -35.40171 -33.79451 -32.20837 -31.16912 -30.98661 -30.43222 -27.15978 -26.51313 -24.26446 -23.84193 -23.41204 -22.32381 -21.56380 -21.06336 -19.23982 -18.77699 -17.76587 -17.44414 -17.30810 -17.05958 -16.77553 -16.15290 -15.97868 -15.75025 -15.54747 -14.91268 -14.73333 -14.53723 -14.33250 -14.15015 -13.71252 -13.57256 -13.29124 -13.22498 -12.88933 -12.84783 -12.50869 -12.41468 -11.90548 -11.89466 -11.73559 -11.40710 -11.26732 -11.11529 -10.98572 -10.85123 -10.67424 -10.45421 -10.12808 -9.97090 -9.71805 -9.56514 -9.40776 -8.90417 -8.76149 -6.93611 -5.81646 -3.08820 0.51536 2.04576 2.15472 3.02159 3.09798 3.24388 3.40725 3.46575 3.47772 3.87449 3.89415 4.16573 4.41260 4.53346 4.72565 4.83436 4.90094 4.96811 5.01115 5.04992 5.11348 5.22284 5.26933 5.37197 5.53343 5.66456 5.68648 5.68870 5.85085 5.95393 5.99806 6.11606 6.20948 6.35214 6.37503 6.69869 6.92852 7.11011 7.19368 7.50212 7.68377 8.09067 8.37836 9.48839 10.04906 10.40785 11.41072 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008462 B = 0.004776 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3308.237374 B = 5861.804556 C = 7581.537522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.140 3.860 11 C 0.173 3.827 12 N -0.695 5.695 13 C 0.606 3.394 14 O -0.486 6.486 15 C -0.045 4.045 16 O -0.180 6.180 17 C 0.203 3.797 18 N -0.468 5.468 19 C -0.019 4.019 20 C 0.361 3.639 21 F -0.191 7.191 22 F -0.175 7.175 23 C -0.153 4.153 24 C 0.060 3.940 25 O -0.384 6.384 26 C 0.065 3.935 27 C -0.165 4.165 28 H 0.254 0.746 29 H 0.380 0.620 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.402 0.598 33 H 0.262 0.738 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.720 -14.800 3.027 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.371 5.371 10 C 0.012 3.988 11 C 0.088 3.912 12 N -0.346 5.346 13 C 0.389 3.611 14 O -0.362 6.362 15 C -0.102 4.102 16 O -0.065 6.065 17 C -0.023 4.023 18 N -0.195 5.195 19 C -0.144 4.144 20 C 0.306 3.694 21 F -0.172 7.172 22 F -0.155 7.155 23 C -0.191 4.191 24 C -0.017 4.017 25 O -0.303 6.303 26 C -0.011 4.011 27 C -0.204 4.204 28 H 0.063 0.937 29 H 0.214 0.786 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.237 0.763 33 H 0.278 0.722 34 H 0.152 0.848 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.892 -14.987 3.762 16.208 hybrid contribution -0.541 1.469 -0.502 1.645 sum -5.433 -13.518 3.259 14.929 Atomic orbital electron populations 1.69666 1.05088 1.25539 1.58092 1.24703 0.95493 0.97628 1.03130 0.86203 0.78738 0.83862 0.77505 1.21746 1.21906 1.20754 1.19223 0.91294 0.84162 1.41811 0.91234 1.42228 1.07918 0.99732 1.87189 1.21143 0.92994 0.84698 0.99963 1.20753 0.86903 0.96122 0.87393 1.45854 1.11125 1.72347 1.05315 1.16202 0.85501 0.77895 0.81488 1.90904 1.18366 1.49263 1.77639 1.23272 0.82425 1.08444 0.96073 1.84574 1.17220 1.66945 1.37727 1.28405 1.00311 0.96727 0.76868 1.70219 0.98974 1.18098 1.32248 1.22406 0.95062 1.05328 0.91569 1.19365 0.83843 0.91319 0.74828 1.93015 1.93729 1.85855 1.44645 1.93096 1.71196 1.74036 1.77219 1.22459 1.01841 0.99465 0.95328 1.22660 0.92987 0.84213 1.01870 1.87908 1.71320 1.41038 1.30005 1.22514 0.96375 0.98242 0.84004 1.22564 0.99238 0.93885 1.04693 0.93663 0.78638 0.93456 0.95185 0.76312 0.72230 0.84788 0.88916 0.89074 0.88630 0.93636 0.89004 0.93715 0.89771 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.36 13.09 55.49 0.73 -26.63 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.24 29.56 -169.99 -5.02 17.22 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.23 -6.40 9.98 -15.06 -0.15 -6.55 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -17.41 5.13 -59.91 -0.31 -17.72 16 10 C 0.14 2.77 5.00 -4.04 -0.02 2.75 16 11 C 0.17 2.64 0.32 -131.64 -0.04 2.60 16 12 N -0.70 -10.23 3.84 -48.72 -0.19 -10.42 16 13 C 0.61 9.73 7.09 -12.83 -0.09 9.64 16 14 O -0.49 -8.75 10.23 5.20 0.05 -8.69 16 15 C -0.04 -0.65 7.14 -36.84 -0.26 -0.91 16 16 O -0.18 -2.17 10.58 4.43 0.05 -2.13 16 17 C 0.20 1.98 13.21 52.25 0.69 2.67 16 18 N -0.47 -6.15 11.12 -10.88 -0.12 -6.27 16 19 C -0.02 -0.27 6.75 -82.47 -0.56 -0.83 16 20 C 0.36 5.01 5.24 36.00 0.19 5.20 16 21 F -0.19 -2.71 17.22 2.25 0.04 -2.67 16 22 F -0.17 -2.67 14.78 2.25 0.03 -2.64 16 23 C -0.15 -2.12 4.75 -26.49 -0.13 -2.24 16 24 C 0.06 0.69 6.67 37.30 0.25 0.94 16 25 O -0.38 -5.00 10.77 -35.23 -0.38 -5.38 16 26 C 0.07 0.79 6.68 37.20 0.25 1.04 16 27 C -0.16 -2.24 4.75 -26.59 -0.13 -2.37 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.38 9.34 6.53 -40.82 -0.27 9.08 16 30 H 0.05 1.04 6.07 -51.93 -0.32 0.72 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.40 5.30 7.37 -40.82 -0.30 4.99 16 33 H 0.26 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.14 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.09 1.43 7.07 -51.93 -0.37 1.06 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.49 7.12 -51.93 -0.37 0.12 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.54 7.75 -51.93 -0.40 0.14 16 41 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 42 H 0.10 1.42 6.21 -51.93 -0.32 1.10 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -33.58 351.89 -4.76 -38.34 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -4.85 Total: 10.22 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -0.10 Total: 11.45 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.11 Total: -61.03 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.28 Total: -16.19 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.07 Total: -5.31 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.58 -4.76 -38.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274002262.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.056 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds