Wall clock time and date at job start Wed Apr 1 2020 03:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86809 * 120.00018 * 2 1 4 4 H 1.48501 * 109.46904 * 270.00118 * 3 2 1 5 5 H 1.48503 * 109.46811 * 29.99817 * 3 2 1 6 6 H 1.48504 * 109.47055 * 149.99933 * 3 2 1 7 7 C 1.38814 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00261 * 185.51388 * 7 2 1 9 9 N 1.36937 * 119.99478 * 5.52073 * 7 2 1 10 10 C 1.46505 * 119.99954 * 185.36477 * 9 7 2 11 11 C 1.52995 * 109.47016 * 185.48820 * 10 9 7 12 12 N 1.46499 * 109.54185 * 299.58499 * 11 10 9 13 13 C 1.34780 * 120.00390 * 298.86641 * 12 11 10 14 14 O 1.21684 * 119.99623 * 5.17436 * 13 12 11 15 15 C 1.46723 * 120.00103 * 185.17274 * 13 12 11 16 16 O 1.35336 * 126.64213 * 353.98903 * 15 13 12 17 17 C 1.33672 * 107.68377 * 179.97438 * 16 15 13 18 18 N 1.30628 * 109.15173 * 359.97438 * 17 16 15 19 19 C 1.33688 * 108.99302 * 0.02562 * 18 17 16 20 20 C 1.50698 * 126.27169 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47166 * 17.16413 * 20 19 18 22 22 F 1.39897 * 109.47555 * 137.16403 * 20 19 18 23 23 C 1.53178 * 109.54698 * 59.76678 * 11 10 9 24 24 C 1.53281 * 109.06041 * 176.85260 * 23 11 10 25 25 O 1.42900 * 109.46118 * 302.43856 * 24 23 11 26 26 C 1.42904 * 114.09389 * 61.16328 * 25 24 23 27 27 C 1.53087 * 109.41853 * 298.84143 * 26 25 24 28 28 H 0.97002 * 119.99852 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00349 * 5.37328 * 9 7 2 30 30 H 1.09002 * 109.46463 * 65.48621 * 10 9 7 31 31 H 1.09002 * 109.46730 * 305.48847 * 10 9 7 32 32 H 0.96997 * 119.99792 * 118.86858 * 12 11 10 33 33 H 1.07996 * 125.42455 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47450 * 257.16520 * 20 19 18 35 35 H 1.08995 * 109.51844 * 296.83856 * 23 11 10 36 36 H 1.08997 * 109.52080 * 57.02440 * 23 11 10 37 37 H 1.09004 * 109.45031 * 182.44811 * 24 23 11 38 38 H 1.08992 * 109.47321 * 62.44758 * 24 23 11 39 39 H 1.09003 * 109.47849 * 178.85657 * 26 25 24 40 40 H 1.09000 * 109.49164 * 58.83416 * 26 25 24 41 41 H 1.09009 * 109.52206 * 297.70366 * 27 26 25 42 42 H 1.09001 * 109.57883 * 177.55126 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0865 -1.2042 0.0904 9 7 1.3304 -2.3853 -0.1130 10 6 2.0482 -3.6570 0.0053 11 6 1.0912 -4.8125 -0.2940 12 7 -0.0142 -4.7949 0.6671 13 6 0.2352 -4.9380 1.9839 14 8 1.3834 -4.9873 2.3837 15 6 -0.8777 -5.0343 2.9352 16 8 -2.1935 -4.8827 2.6570 17 6 -2.8713 -5.0480 3.7972 18 7 -2.0289 -5.2953 4.7645 19 6 -0.7867 -5.2947 4.2704 20 6 0.4818 -5.5382 5.0468 21 9 0.1715 -6.1450 6.2686 22 9 1.3255 -6.3768 4.3107 23 6 0.5376 -4.6646 -1.7146 24 6 -0.3571 -5.8683 -2.0310 25 8 0.3957 -7.0736 -1.8810 26 6 0.8987 -7.2867 -0.5605 27 6 1.8437 -6.1423 -0.1850 28 1 -0.4850 0.8401 -0.0004 29 1 0.3735 -2.3815 -0.2720 30 1 2.4381 -3.7610 1.0179 31 1 2.8740 -3.6755 -0.7058 32 1 -0.9257 -4.6802 0.3559 33 1 -3.9444 -4.9877 3.9019 34 1 0.9837 -4.5881 5.2302 35 1 -0.0454 -3.7463 -1.7844 36 1 1.3632 -4.6279 -2.4253 37 1 -0.7198 -5.7914 -3.0561 38 1 -1.2045 -5.8813 -1.3456 39 1 1.4407 -8.2318 -0.5262 40 1 0.0680 -7.3183 0.1444 41 1 2.6957 -6.1354 -0.8650 42 1 2.1951 -6.2794 0.8377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274002262.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:29 Heat of formation + Delta-G solvation = -159.103342 kcal Electronic energy + Delta-G solvation = -32373.024080 eV Core-core repulsion = 27604.526916 eV Total energy + Delta-G solvation = -4768.497164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.133 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.06022 -48.06905 -44.70113 -41.82299 -39.59333 -37.33441 -36.44451 -35.50847 -33.56363 -32.51122 -32.08653 -31.88103 -28.39283 -27.94827 -25.57105 -25.14839 -24.59825 -23.44082 -22.97224 -22.14588 -20.47326 -19.86041 -19.28877 -18.82579 -18.47926 -18.16591 -17.80655 -17.28780 -17.04619 -16.89875 -16.66355 -16.37395 -16.10896 -15.83803 -15.44137 -15.35546 -15.21235 -14.93178 -14.82133 -14.39417 -14.24110 -14.00825 -13.85062 -13.66374 -13.28739 -13.12022 -12.92262 -12.85385 -12.78840 -12.44527 -12.34661 -12.13933 -12.11956 -11.99643 -11.76060 -11.45070 -11.16698 -10.87379 -10.65498 -10.44181 -10.03111 -8.95640 -7.96459 -5.22623 -0.52187 1.11639 1.18374 1.45960 1.46094 1.54434 1.82753 1.96825 2.28588 2.54258 2.89965 2.93825 3.12622 3.34121 3.41789 3.56794 3.73703 3.75809 3.82952 3.96670 3.99312 4.05003 4.21693 4.25826 4.27371 4.41366 4.58970 4.72601 4.76157 4.83412 4.83907 4.90844 5.00359 5.10131 5.15757 5.16930 5.45772 5.50627 6.12152 6.22020 6.26497 6.35909 6.90140 7.33923 8.07000 8.34967 9.26061 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008462 B = 0.004776 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3308.237374 B = 5861.804556 C = 7581.537522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.066 0.934 9 N -0.729 5.729 10 C 0.141 3.859 11 C 0.180 3.820 12 N -0.689 5.689 13 C 0.602 3.398 14 O -0.514 6.514 15 C -0.069 4.069 16 O -0.180 6.180 17 C 0.235 3.765 18 N -0.500 5.500 19 C -0.022 4.022 20 C 0.357 3.643 21 F -0.194 7.194 22 F -0.185 7.185 23 C -0.146 4.146 24 C 0.064 3.936 25 O -0.390 6.390 26 C 0.071 3.929 27 C -0.158 4.158 28 H 0.250 0.750 29 H 0.376 0.624 30 H 0.027 0.973 31 H 0.029 0.971 32 H 0.410 0.590 33 H 0.319 0.681 34 H 0.148 0.852 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.059 0.941 39 H 0.110 0.890 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.030 -15.453 2.646 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.795 3.205 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.374 4.374 8 H 0.084 0.916 9 N -0.372 5.372 10 C 0.014 3.986 11 C 0.095 3.905 12 N -0.341 5.341 13 C 0.386 3.614 14 O -0.392 6.392 15 C -0.127 4.127 16 O -0.066 6.066 17 C 0.011 3.989 18 N -0.227 5.227 19 C -0.146 4.146 20 C 0.302 3.698 21 F -0.175 7.175 22 F -0.166 7.166 23 C -0.184 4.184 24 C -0.013 4.013 25 O -0.309 6.309 26 C -0.006 4.006 27 C -0.197 4.197 28 H 0.059 0.941 29 H 0.209 0.791 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.246 0.754 33 H 0.334 0.666 34 H 0.165 0.835 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.128 0.872 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.193 -15.670 3.377 17.184 hybrid contribution -0.183 1.649 -0.324 1.690 sum -6.376 -14.021 3.052 15.702 Atomic orbital electron populations 1.69791 1.06197 1.25872 1.59426 1.25400 0.96341 1.00501 1.03747 0.85255 0.77661 0.80067 0.77468 1.21237 1.22259 1.20144 1.19530 0.91453 0.85606 1.40782 0.91566 1.42284 1.07778 1.00321 1.86849 1.21177 0.93927 0.84882 0.98613 1.20599 0.86519 0.95053 0.88356 1.45779 1.11328 1.71967 1.04992 1.16422 0.85730 0.77365 0.81899 1.90882 1.19609 1.50501 1.78161 1.22870 0.83164 1.10876 0.95742 1.84583 1.16212 1.67149 1.38608 1.29773 1.01794 0.92160 0.75198 1.70260 0.98780 1.20201 1.33491 1.22488 0.95705 1.04779 0.91616 1.19549 0.84053 0.91542 0.74628 1.93002 1.93768 1.85972 1.44764 1.93069 1.71593 1.74404 1.77511 1.22379 1.01915 1.00044 0.94059 1.22725 0.92496 0.82586 1.03459 1.87912 1.71466 1.41273 1.30257 1.22529 0.96147 0.98138 0.83787 1.22494 0.99616 0.93525 1.04049 0.94076 0.79113 0.95559 0.95315 0.75387 0.66645 0.83509 0.90517 0.89441 0.86624 0.92311 0.87165 0.93540 0.89380 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.64 13.09 21.65 0.28 -56.36 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.97 45.87 29.56 68.60 2.03 47.90 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.24 -13.38 9.98 84.03 0.84 -12.54 16 8 H 0.07 3.64 7.83 -2.91 -0.02 3.61 16 9 N -0.73 -35.51 5.13 -343.45 -1.76 -37.27 16 10 C 0.14 5.72 5.00 86.38 0.43 6.15 16 11 C 0.18 5.47 0.32 3.72 0.00 5.47 16 12 N -0.69 -20.15 3.84 -426.26 -1.64 -21.79 16 13 C 0.60 19.49 7.09 86.46 0.61 20.10 16 14 O -0.51 -19.03 10.23 -4.30 -0.04 -19.07 16 15 C -0.07 -1.97 7.14 24.05 0.17 -1.80 16 16 O -0.18 -4.01 10.58 -7.08 -0.07 -4.08 16 17 C 0.24 3.88 13.21 130.42 1.72 5.60 16 18 N -0.50 -12.29 11.12 -303.11 -3.37 -15.66 16 19 C -0.02 -0.61 6.75 41.83 0.28 -0.33 16 20 C 0.36 9.99 5.24 71.24 0.37 10.36 16 21 F -0.19 -5.48 17.22 44.97 0.77 -4.71 16 22 F -0.18 -5.78 14.78 44.97 0.66 -5.12 16 23 C -0.15 -3.93 4.75 30.75 0.15 -3.78 16 24 C 0.06 1.35 6.67 72.08 0.48 1.83 16 25 O -0.39 -9.25 10.77 -148.98 -1.60 -10.85 16 26 C 0.07 1.59 6.68 72.01 0.48 2.07 16 27 C -0.16 -4.22 4.75 30.68 0.15 -4.07 16 28 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.38 18.77 6.53 -92.71 -0.61 18.16 16 30 H 0.03 1.20 6.07 -2.39 -0.01 1.19 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.41 10.50 7.37 -92.71 -0.68 9.82 16 33 H 0.32 0.79 8.06 -2.91 -0.02 0.76 16 34 H 0.15 3.64 8.14 -2.39 -0.02 3.62 16 35 H 0.08 2.34 7.07 -2.39 -0.02 2.32 16 36 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.06 1.11 7.12 -2.39 -0.02 1.09 16 39 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.05 1.04 7.75 -2.39 -0.02 1.03 16 41 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.08 2.47 6.21 -2.39 -0.01 2.45 16 Total: -1.00 -72.96 351.89 1.23 -71.73 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: -0.18 Total: 29.53 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 6.15 Total: 25.75 kcal Atomic # 7 Polarization: -124.59 SS G_CDS: -6.49 Total: -131.08 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -1.72 Total: -34.01 kcal Atomic # 9 Polarization: -11.27 SS G_CDS: 1.44 Total: -9.83 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -72.96 1.23 -71.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274002262.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.370 kcal (2) G-P(sol) polarization free energy of solvation -72.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds