Wall clock time and date at job start Wed Apr 1 2020 03:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 110.91754 * 2 1 4 4 C 1.34771 * 119.99952 * 56.10249 * 3 2 1 5 5 O 1.21284 * 120.00405 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99969 * 180.02562 * 4 3 2 7 7 C 1.50703 * 109.47040 * 179.97438 * 6 4 3 8 8 N 1.28729 * 121.08104 * 269.71066 * 7 6 4 9 9 S 1.69391 * 108.98110 * 179.90433 * 8 7 6 10 10 C 1.76504 * 96.12074 * 0.31416 * 9 8 7 11 11 C 1.38787 * 133.55735 * 179.85529 * 10 9 8 12 12 C 1.36716 * 119.75935 * 179.97438 * 11 10 9 13 13 C 1.38977 * 120.14891 * 0.02562 * 12 11 10 14 14 C 1.36036 * 121.16074 * 359.97083 * 13 12 11 15 15 C 1.40804 * 105.52056 * 359.82746 * 10 9 8 16 16 C 1.55157 * 111.00174 * 236.09794 * 2 1 3 17 17 C 1.54330 * 102.94216 * 206.42813 * 16 2 1 18 18 N 1.47024 * 107.27024 * 22.18785 * 17 16 2 19 19 C 1.36934 * 125.64602 * 181.02080 * 18 17 16 20 20 H 1.07999 * 119.99808 * 185.23411 * 19 18 17 21 21 C 1.38812 * 120.00061 * 5.23969 * 19 18 17 22 22 N 1.31616 * 120.00266 * 352.94921 * 21 19 18 23 23 Si 1.86798 * 119.99789 * 172.94425 * 21 19 18 24 24 H 1.48497 * 109.47680 * 275.01041 * 23 21 19 25 25 H 1.48497 * 109.47264 * 35.01281 * 23 21 19 26 26 H 1.48501 * 109.46844 * 155.00924 * 23 21 19 27 27 C 1.47420 * 108.70353 * 1.29157 * 18 17 16 28 28 H 1.08997 * 109.47354 * 183.90427 * 1 2 3 29 29 H 1.09002 * 109.46729 * 303.90329 * 1 2 3 30 30 H 1.08998 * 109.46925 * 63.89825 * 1 2 3 31 31 H 0.96997 * 119.99570 * 236.09744 * 3 2 1 32 32 H 1.08999 * 109.46592 * 299.99254 * 6 4 3 33 33 H 1.09000 * 109.47315 * 59.99027 * 6 4 3 34 34 H 1.07997 * 120.12248 * 359.95327 * 11 10 9 35 35 H 1.08001 * 119.92549 * 179.97438 * 12 11 10 36 36 H 1.08005 * 119.41513 * 179.97438 * 13 12 11 37 37 H 1.07998 * 119.89332 * 180.02562 * 14 13 12 38 38 H 1.08996 * 110.71929 * 88.06262 * 16 2 1 39 39 H 1.09003 * 110.72157 * 324.78291 * 16 2 1 40 40 H 1.09000 * 109.87816 * 262.77979 * 17 16 2 41 41 H 1.08997 * 110.01127 * 141.68502 * 17 16 2 42 42 H 0.96999 * 120.00588 * 180.02562 * 22 21 19 43 43 H 1.09003 * 110.36644 * 94.47668 * 27 18 17 44 44 H 1.08995 * 110.36947 * 216.80156 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0531 1.3685 0.0000 4 6 1.6856 2.2303 0.9688 5 8 0.9216 1.8732 1.8404 6 6 2.2232 3.6382 0.9685 7 6 1.6620 4.3904 2.1475 8 7 0.5625 5.0530 2.0509 9 16 0.2187 5.7710 3.5460 10 6 1.6480 5.1594 4.3817 11 6 2.1311 5.2962 5.6756 12 6 3.3004 4.6838 6.0316 13 6 4.0035 3.9274 5.1017 14 6 3.5500 3.7787 3.8278 15 6 2.3458 4.3966 3.4257 16 6 2.0861 -0.8079 -1.2022 17 6 3.4674 -1.2743 -0.6960 18 7 3.4271 -1.2431 0.7733 19 6 4.4640 -1.5669 1.6071 20 1 4.3095 -1.5935 2.6757 21 6 5.7136 -1.8607 1.0790 22 7 5.8697 -1.9645 -0.2238 23 14 7.1739 -2.1086 2.2172 24 1 7.7780 -0.7914 2.5416 25 1 6.7199 -2.7666 3.4687 26 1 8.1846 -2.9650 1.5463 27 6 2.0836 -0.8119 1.2004 28 1 -0.3634 -1.0252 0.0700 29 1 -0.3633 0.5732 0.8530 30 1 -0.3633 0.4521 -0.9228 31 1 2.6639 1.6541 -0.6972 32 1 3.3107 3.6118 1.0381 33 1 1.9303 4.1387 0.0456 34 1 1.5854 5.8845 6.3984 35 1 3.6790 4.7889 7.0376 36 1 4.9262 3.4491 5.3956 37 1 4.1127 3.1859 3.1218 38 1 2.1921 -0.1700 -2.0796 39 1 1.4468 -1.6633 -1.4209 40 1 4.2426 -0.5999 -1.0599 41 1 3.6677 -2.2890 -1.0400 42 1 6.7428 -2.1702 -0.5929 43 1 1.4524 -1.6782 1.3987 44 1 2.1516 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324672180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:36 Heat of formation + Delta-G solvation = 44.328031 kcal Electronic energy + Delta-G solvation = -28103.374072 eV Core-core repulsion = 24340.680755 eV Total energy + Delta-G solvation = -3762.693317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.38101 -39.54704 -37.55592 -36.54936 -33.92844 -32.19605 -31.41983 -30.62376 -30.44726 -29.32755 -28.61284 -25.67566 -23.96350 -23.53741 -23.00344 -21.56964 -20.30470 -19.72200 -19.05641 -18.61414 -17.24337 -16.60987 -16.49859 -15.78343 -15.40534 -15.19244 -14.94053 -14.64543 -14.47278 -14.06198 -13.88085 -13.74182 -13.34743 -13.24353 -12.78703 -12.52819 -12.16400 -12.12329 -11.93545 -11.92670 -11.79477 -11.68738 -11.61444 -10.92121 -10.90581 -10.86951 -10.60082 -10.39898 -10.36227 -10.11071 -10.03374 -9.93469 -9.69731 -9.27914 -9.07963 -8.67567 -8.52355 -7.95844 -6.82112 -5.74248 -3.05077 0.39444 1.05607 1.32935 1.70221 1.98587 2.90330 3.37124 3.39865 3.43397 3.44809 3.60003 4.15896 4.36807 4.48458 4.72680 4.80215 4.96741 5.03905 5.15845 5.17174 5.20468 5.33087 5.37051 5.45415 5.50321 5.62114 5.72309 5.73961 5.88557 6.03323 6.05509 6.13719 6.17705 6.26034 6.36352 6.40261 6.49557 6.53696 6.63522 6.69650 6.79242 7.11444 7.51642 7.55701 7.78040 7.87093 8.23890 8.53640 9.21005 9.81336 10.48207 11.38024 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010925 B = 0.003840 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.371221 B = 7289.889601 C = 9271.613859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 N -0.698 5.698 4 C 0.524 3.476 5 O -0.531 6.531 6 C -0.083 4.083 7 C 0.189 3.811 8 N -0.433 5.433 9 S 0.175 5.825 10 C -0.132 4.132 11 C -0.086 4.086 12 C -0.081 4.081 13 C -0.123 4.123 14 C -0.042 4.042 15 C -0.120 4.120 16 C -0.146 4.146 17 C 0.176 3.824 18 N -0.603 5.603 19 C -0.223 4.223 20 H 0.076 0.924 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.282 1.282 26 H -0.291 1.291 27 C 0.134 3.866 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.400 0.600 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.041 0.959 42 H 0.251 0.749 43 H 0.024 0.976 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.395 15.146 4.411 17.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.072 3.928 3 N -0.348 5.348 4 C 0.308 3.692 5 O -0.408 6.408 6 C -0.128 4.128 7 C -0.002 4.002 8 N -0.244 5.244 9 S 0.330 5.670 10 C -0.253 4.253 11 C -0.109 4.109 12 C -0.104 4.104 13 C -0.143 4.143 14 C -0.064 4.064 15 C -0.131 4.131 16 C -0.185 4.185 17 C 0.051 3.949 18 N -0.329 5.329 19 C -0.351 4.351 20 H 0.093 0.907 21 C -0.203 4.203 22 N -0.570 5.570 23 Si 0.738 3.262 24 H -0.216 1.216 25 H -0.208 1.208 26 H -0.218 1.218 27 C 0.007 3.993 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.234 0.766 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.042 0.958 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.794 15.921 4.452 18.725 hybrid contribution 2.683 -1.006 0.462 2.903 sum -6.111 14.915 4.914 16.851 Atomic orbital electron populations 1.22040 0.94280 1.02340 1.02517 1.21505 0.92645 0.80609 0.98077 1.45719 1.48606 1.11783 1.28727 1.19916 0.81450 0.85959 0.81873 1.90682 1.35361 1.78233 1.36491 1.20540 1.02615 0.93332 0.96333 1.21798 0.90379 0.94049 0.93928 1.75694 1.16586 1.15172 1.16901 1.84690 1.25241 1.55896 1.01126 1.23441 1.00206 1.02919 0.98703 1.19946 0.96904 1.01203 0.92874 1.21059 0.94066 0.95493 0.99758 1.20816 1.00941 0.99481 0.93111 1.20802 0.92963 0.95798 0.96849 1.20088 0.98476 1.02405 0.92173 1.23222 1.00428 0.98928 0.95932 1.21167 0.90065 0.99895 0.83737 1.44449 1.07854 1.78846 1.01775 1.19030 0.87418 1.39540 0.89153 0.90654 1.24759 0.97428 1.02154 0.95942 1.69952 1.22473 1.55069 1.09481 0.86202 0.82741 0.77532 0.79736 1.21623 1.20805 1.21769 1.21902 0.87556 0.94801 0.95033 0.91985 0.90373 0.93241 0.76595 0.86339 0.86611 0.85072 0.84802 0.84805 0.84633 0.91700 0.90915 0.93438 0.94054 0.93830 0.95799 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.59 37.16 0.32 -2.09 16 2 C 0.16 2.74 0.82 -129.55 -0.11 2.64 16 3 N -0.70 -10.79 5.19 -45.51 -0.24 -11.02 16 4 C 0.52 8.32 7.21 -10.99 -0.08 8.24 16 5 O -0.53 -10.30 12.87 5.55 0.07 -10.23 16 6 C -0.08 -1.03 5.97 -29.03 -0.17 -1.21 16 7 C 0.19 2.73 5.37 -81.23 -0.44 2.29 16 8 N -0.43 -6.60 11.84 34.00 0.40 -6.20 16 9 S 0.18 2.34 23.86 -107.50 -2.56 -0.22 16 10 C -0.13 -1.74 6.71 -38.41 -0.26 -2.00 16 11 C -0.09 -0.91 10.02 -39.93 -0.40 -1.31 16 12 C -0.08 -0.77 10.01 -39.86 -0.40 -1.17 16 13 C -0.12 -1.33 9.92 -40.10 -0.40 -1.73 16 14 C -0.04 -0.54 9.72 -39.25 -0.38 -0.92 16 15 C -0.12 -1.68 6.04 -105.14 -0.64 -2.32 16 16 C -0.15 -2.52 5.97 -24.89 -0.15 -2.67 16 17 C 0.18 4.01 5.38 -3.06 -0.02 4.00 16 18 N -0.60 -14.93 3.39 -169.93 -0.58 -15.51 16 19 C -0.22 -6.10 10.26 -15.06 -0.15 -6.25 16 20 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 21 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 22 N -0.92 -26.07 10.36 55.49 0.57 -25.50 16 23 Si 0.91 21.57 29.56 -169.99 -5.02 16.55 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.13 2.88 6.18 -2.41 -0.01 2.86 16 28 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 29 H 0.08 1.37 5.92 -51.93 -0.31 1.06 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.40 5.32 8.51 -40.82 -0.35 4.97 16 32 H 0.12 1.21 7.54 -51.93 -0.39 0.82 16 33 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.14 1.65 7.64 -52.49 -0.40 1.25 16 38 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 39 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 40 H 0.05 1.17 7.30 -51.93 -0.38 0.79 16 41 H 0.04 1.06 7.60 -51.93 -0.39 0.67 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.02 0.53 7.99 -51.93 -0.41 0.11 16 44 H 0.05 1.16 6.89 -51.93 -0.36 0.80 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -33.28 372.22 -11.03 -44.31 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.91 Total: 4.13 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -3.38 Total: -1.92 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.16 Total: -58.23 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.56 Total: -0.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.28 -11.03 -44.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324672180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.637 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds