Wall clock time and date at job start Wed Apr 1 2020 03:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 110.91754 * 2 1 4 4 C 1.34771 * 119.99952 * 56.10249 * 3 2 1 5 5 O 1.21284 * 120.00405 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99969 * 180.02562 * 4 3 2 7 7 C 1.50703 * 109.47040 * 179.97438 * 6 4 3 8 8 N 1.28729 * 121.08104 * 269.71066 * 7 6 4 9 9 S 1.69391 * 108.98110 * 179.90433 * 8 7 6 10 10 C 1.76504 * 96.12074 * 0.31416 * 9 8 7 11 11 C 1.38787 * 133.55735 * 179.85529 * 10 9 8 12 12 C 1.36716 * 119.75935 * 179.97438 * 11 10 9 13 13 C 1.38977 * 120.14891 * 0.02562 * 12 11 10 14 14 C 1.36036 * 121.16074 * 359.97083 * 13 12 11 15 15 C 1.40804 * 105.52056 * 359.82746 * 10 9 8 16 16 C 1.55157 * 111.00174 * 236.09794 * 2 1 3 17 17 C 1.54330 * 102.94216 * 206.42813 * 16 2 1 18 18 N 1.47024 * 107.27024 * 22.18785 * 17 16 2 19 19 C 1.36934 * 125.64602 * 181.02080 * 18 17 16 20 20 H 1.07999 * 119.99808 * 185.23411 * 19 18 17 21 21 C 1.38812 * 120.00061 * 5.23969 * 19 18 17 22 22 N 1.31616 * 120.00266 * 352.94921 * 21 19 18 23 23 Si 1.86798 * 119.99789 * 172.94425 * 21 19 18 24 24 H 1.48497 * 109.47680 * 275.01041 * 23 21 19 25 25 H 1.48497 * 109.47264 * 35.01281 * 23 21 19 26 26 H 1.48501 * 109.46844 * 155.00924 * 23 21 19 27 27 C 1.47420 * 108.70353 * 1.29157 * 18 17 16 28 28 H 1.08997 * 109.47354 * 183.90427 * 1 2 3 29 29 H 1.09002 * 109.46729 * 303.90329 * 1 2 3 30 30 H 1.08998 * 109.46925 * 63.89825 * 1 2 3 31 31 H 0.96997 * 119.99570 * 236.09744 * 3 2 1 32 32 H 1.08999 * 109.46592 * 299.99254 * 6 4 3 33 33 H 1.09000 * 109.47315 * 59.99027 * 6 4 3 34 34 H 1.07997 * 120.12248 * 359.95327 * 11 10 9 35 35 H 1.08001 * 119.92549 * 179.97438 * 12 11 10 36 36 H 1.08005 * 119.41513 * 179.97438 * 13 12 11 37 37 H 1.07998 * 119.89332 * 180.02562 * 14 13 12 38 38 H 1.08996 * 110.71929 * 88.06262 * 16 2 1 39 39 H 1.09003 * 110.72157 * 324.78291 * 16 2 1 40 40 H 1.09000 * 109.87816 * 262.77979 * 17 16 2 41 41 H 1.08997 * 110.01127 * 141.68502 * 17 16 2 42 42 H 0.96999 * 120.00588 * 180.02562 * 22 21 19 43 43 H 1.09003 * 110.36644 * 94.47668 * 27 18 17 44 44 H 1.08995 * 110.36947 * 216.80156 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0531 1.3685 0.0000 4 6 1.6856 2.2303 0.9688 5 8 0.9216 1.8732 1.8404 6 6 2.2232 3.6382 0.9685 7 6 1.6620 4.3904 2.1475 8 7 0.5625 5.0530 2.0509 9 16 0.2187 5.7710 3.5460 10 6 1.6480 5.1594 4.3817 11 6 2.1311 5.2962 5.6756 12 6 3.3004 4.6838 6.0316 13 6 4.0035 3.9274 5.1017 14 6 3.5500 3.7787 3.8278 15 6 2.3458 4.3966 3.4257 16 6 2.0861 -0.8079 -1.2022 17 6 3.4674 -1.2743 -0.6960 18 7 3.4271 -1.2431 0.7733 19 6 4.4640 -1.5669 1.6071 20 1 4.3095 -1.5935 2.6757 21 6 5.7136 -1.8607 1.0790 22 7 5.8697 -1.9645 -0.2238 23 14 7.1739 -2.1086 2.2172 24 1 7.7780 -0.7914 2.5416 25 1 6.7199 -2.7666 3.4687 26 1 8.1846 -2.9650 1.5463 27 6 2.0836 -0.8119 1.2004 28 1 -0.3634 -1.0252 0.0700 29 1 -0.3633 0.5732 0.8530 30 1 -0.3633 0.4521 -0.9228 31 1 2.6639 1.6541 -0.6972 32 1 3.3107 3.6118 1.0381 33 1 1.9303 4.1387 0.0456 34 1 1.5854 5.8845 6.3984 35 1 3.6790 4.7889 7.0376 36 1 4.9262 3.4491 5.3956 37 1 4.1127 3.1859 3.1218 38 1 2.1921 -0.1700 -2.0796 39 1 1.4468 -1.6633 -1.4209 40 1 4.2426 -0.5999 -1.0599 41 1 3.6677 -2.2890 -1.0400 42 1 6.7428 -2.1702 -0.5929 43 1 1.4524 -1.6782 1.3987 44 1 2.1516 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324672180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:35 Heat of formation + Delta-G solvation = 23.649146 kcal Electronic energy + Delta-G solvation = -28104.270776 eV Core-core repulsion = 24340.680755 eV Total energy + Delta-G solvation = -3763.590021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.52807 -40.69636 -38.97167 -37.64672 -35.61969 -33.77403 -32.49532 -31.92725 -31.48512 -30.70138 -30.10342 -27.49633 -25.49075 -24.67963 -23.91958 -22.80751 -22.01696 -20.88717 -20.46224 -19.54891 -18.94485 -18.06366 -17.41248 -17.15698 -16.68048 -16.42312 -16.18991 -16.08065 -15.63372 -15.54900 -15.25032 -14.89555 -14.68758 -14.39797 -14.16132 -13.84908 -13.64512 -13.48623 -13.27100 -13.12470 -13.07010 -12.86150 -12.74483 -12.72159 -12.61994 -12.09269 -12.02057 -11.95959 -11.80032 -11.68354 -11.62119 -11.56785 -10.91865 -10.65981 -10.59391 -9.98922 -9.97470 -8.93084 -8.83889 -7.83615 -5.16396 -0.55422 0.16753 0.36422 0.69204 1.00476 1.47539 1.48354 1.56780 1.66819 2.27350 2.51164 2.63911 3.19456 3.34680 3.44041 3.58591 3.70689 3.80957 3.98034 4.05101 4.06958 4.18785 4.21795 4.28594 4.33901 4.45542 4.60873 4.65036 4.70808 4.83059 4.86108 4.89408 4.93375 5.00204 5.03092 5.09573 5.23187 5.36450 5.40427 5.46599 5.52947 5.66374 5.71222 5.80325 5.80726 6.22526 6.64260 7.14286 7.31157 7.79871 8.45151 9.26508 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010925 B = 0.003840 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.371221 B = 7289.889601 C = 9271.613859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.169 3.831 3 N -0.694 5.694 4 C 0.523 3.477 5 O -0.569 6.569 6 C -0.077 4.077 7 C 0.181 3.819 8 N -0.461 5.461 9 S 0.172 5.828 10 C -0.147 4.147 11 C -0.090 4.090 12 C -0.071 4.071 13 C -0.125 4.125 14 C -0.062 4.062 15 C -0.146 4.146 16 C -0.128 4.128 17 C 0.184 3.816 18 N -0.619 5.619 19 C -0.242 4.242 20 H 0.068 0.932 21 C -0.053 4.053 22 N -0.943 5.943 23 Si 0.970 3.030 24 H -0.280 1.280 25 H -0.277 1.277 26 H -0.294 1.294 27 C 0.133 3.867 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.412 0.588 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.159 0.841 35 H 0.173 0.827 36 H 0.154 0.846 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.025 0.975 41 H 0.005 0.995 42 H 0.248 0.752 43 H 0.019 0.981 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.053 16.217 5.015 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.082 3.918 3 N -0.345 5.345 4 C 0.309 3.691 5 O -0.448 6.448 6 C -0.122 4.122 7 C -0.009 4.009 8 N -0.273 5.273 9 S 0.327 5.673 10 C -0.267 4.267 11 C -0.113 4.113 12 C -0.093 4.093 13 C -0.145 4.145 14 C -0.084 4.084 15 C -0.157 4.157 16 C -0.167 4.167 17 C 0.060 3.940 18 N -0.345 5.345 19 C -0.371 4.371 20 H 0.086 0.914 21 C -0.247 4.247 22 N -0.592 5.592 23 Si 0.798 3.202 24 H -0.206 1.206 25 H -0.203 1.203 26 H -0.221 1.221 27 C 0.007 3.993 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.248 0.752 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.176 0.824 35 H 0.190 0.810 36 H 0.172 0.828 37 H 0.150 0.850 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.043 0.957 41 H 0.023 0.977 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.462 17.013 5.040 19.658 hybrid contribution 2.606 -1.378 0.393 2.974 sum -5.856 15.636 5.433 17.558 Atomic orbital electron populations 1.21948 0.92503 1.02835 1.02918 1.21322 0.93729 0.81056 0.95704 1.45672 1.48736 1.10966 1.29142 1.20434 0.80637 0.87044 0.81002 1.90669 1.37091 1.79168 1.37864 1.20592 1.03563 0.90961 0.97040 1.22094 0.90242 0.93818 0.94725 1.75617 1.17249 1.16212 1.18178 1.84503 1.25857 1.56050 1.00905 1.23721 0.99976 1.03260 0.99765 1.20400 0.97382 1.01207 0.92280 1.21516 0.93057 0.93624 1.01085 1.21184 1.01641 0.99162 0.92540 1.20943 0.93005 0.96472 0.97969 1.20282 0.99372 1.03596 0.92471 1.23095 0.96915 0.99924 0.96730 1.20964 0.92908 0.97421 0.82746 1.44676 1.08470 1.78765 1.02571 1.19270 0.88681 1.39757 0.89416 0.91384 1.25472 0.99623 1.02207 0.97359 1.70144 1.22568 1.55653 1.10813 0.85236 0.79369 0.77579 0.78009 1.20628 1.20289 1.22068 1.21966 0.86347 0.94819 0.96205 0.91152 0.92311 0.90751 0.75165 0.84293 0.83990 0.82372 0.80975 0.82821 0.84998 0.88267 0.89443 0.95673 0.97716 0.94304 0.96353 0.95416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 8.59 71.98 0.62 -3.64 16 2 C 0.17 5.67 0.82 5.07 0.00 5.68 16 3 N -0.69 -20.63 5.19 -416.30 -2.16 -22.79 16 4 C 0.52 16.37 7.21 87.66 0.63 17.00 16 5 O -0.57 -22.32 12.87 -3.04 -0.04 -22.36 16 6 C -0.08 -1.85 5.97 29.10 0.17 -1.68 16 7 C 0.18 5.22 5.37 44.74 0.24 5.46 16 8 N -0.46 -14.15 11.84 -46.34 -0.55 -14.70 16 9 S 0.17 4.60 23.86 -56.49 -1.35 3.25 16 10 C -0.15 -3.78 6.71 23.03 0.15 -3.62 16 11 C -0.09 -1.71 10.02 22.04 0.22 -1.49 16 12 C -0.07 -1.14 10.01 22.09 0.22 -0.92 16 13 C -0.13 -2.47 9.92 21.93 0.22 -2.25 16 14 C -0.06 -1.54 9.72 22.49 0.22 -1.32 16 15 C -0.15 -4.08 6.04 -20.20 -0.12 -4.20 16 16 C -0.13 -4.19 5.97 31.78 0.19 -4.00 16 17 C 0.18 8.47 5.38 86.73 0.47 8.94 16 18 N -0.62 -31.19 3.39 -691.55 -2.35 -33.53 16 19 C -0.24 -13.50 10.26 84.03 0.86 -12.64 16 20 H 0.07 3.78 7.84 -2.91 -0.02 3.76 16 21 C -0.05 -2.92 5.48 84.86 0.46 -2.46 16 22 N -0.94 -54.18 10.36 21.65 0.22 -53.96 16 23 Si 0.97 44.52 29.56 68.60 2.03 46.55 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 27 C 0.13 5.78 6.18 86.93 0.54 6.32 16 28 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 29 H 0.06 2.02 5.92 -2.39 -0.01 2.01 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.41 10.21 8.51 -92.71 -0.79 9.42 16 32 H 0.14 2.71 7.54 -2.39 -0.02 2.69 16 33 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 37 H 0.13 3.24 7.64 -2.91 -0.02 3.22 16 38 H 0.10 2.60 8.09 -2.39 -0.02 2.59 16 39 H 0.09 2.65 8.04 -2.39 -0.02 2.63 16 40 H 0.03 1.25 7.30 -2.39 -0.02 1.24 16 41 H 0.00 0.24 7.60 -2.39 -0.02 0.22 16 42 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 43 H 0.02 0.83 7.99 -2.39 -0.02 0.81 16 44 H 0.03 1.32 6.89 -2.39 -0.02 1.30 16 Total: -1.00 -74.70 372.22 1.16 -73.54 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.25 Total: 18.84 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 5.10 Total: 5.17 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -4.83 Total: -124.98 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.04 Total: -22.36 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.35 Total: 3.25 kcal Total: -74.70 1.16 -73.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324672180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.193 kcal (2) G-P(sol) polarization free energy of solvation -74.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds