Wall clock time and date at job start Wed Apr 1 2020 03:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28063 * 124.24012 * 2 1 4 4 C 1.34410 * 117.91239 * 179.97438 * 3 2 1 5 5 C 1.41251 * 129.47970 * 180.02562 * 4 3 2 6 6 C 1.35754 * 120.63408 * 180.02562 * 5 4 3 7 7 C 1.40193 * 120.61704 * 359.97438 * 6 5 4 8 8 C 1.47583 * 120.12790 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00377 * 179.97438 * 8 7 6 10 10 N 1.34778 * 120.00048 * 0.02562 * 8 7 6 11 11 C 1.46495 * 120.00286 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47612 * 174.80724 * 11 10 8 13 13 N 1.46499 * 112.84441 * 311.21926 * 12 11 10 14 14 C 1.36943 * 120.00010 * 293.74909 * 13 12 11 15 15 H 1.08000 * 119.99724 * 354.49570 * 14 13 12 16 16 C 1.38809 * 119.99861 * 174.49592 * 14 13 12 17 17 N 1.31617 * 120.00544 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99485 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47453 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47171 * 120.00311 * 18 16 14 21 21 H 1.48510 * 109.46660 * 239.99647 * 18 16 14 22 22 C 1.53786 * 113.69075 * 82.48122 * 12 11 10 23 23 C 1.53782 * 87.07936 * 139.99859 * 22 12 11 24 24 C 1.53782 * 113.61857 * 180.02562 * 12 11 10 25 25 C 1.39182 * 119.74687 * 0.23686 * 7 6 5 26 26 C 1.38920 * 119.84559 * 359.50884 * 25 7 6 27 27 S 1.70646 * 124.24084 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47787 * 90.02159 * 1 2 3 29 29 H 1.09007 * 109.46742 * 210.02060 * 1 2 3 30 30 H 1.09007 * 109.47092 * 330.01727 * 1 2 3 31 31 H 1.07999 * 119.68021 * 0.02562 * 5 4 3 32 32 H 1.07998 * 119.68932 * 179.97438 * 6 5 4 33 33 H 0.96998 * 119.99988 * 0.02562 * 10 8 7 34 34 H 1.08999 * 109.47187 * 54.80412 * 11 10 8 35 35 H 1.09011 * 109.47235 * 294.80521 * 11 10 8 36 36 H 0.97000 * 120.00560 * 113.48668 * 13 12 11 37 37 H 0.97001 * 120.00287 * 179.97438 * 17 16 14 38 38 H 1.09001 * 113.61170 * 254.54906 * 22 12 11 39 39 H 1.08992 * 113.61190 * 25.44765 * 22 12 11 40 40 H 1.09000 * 113.61120 * 220.01889 * 23 22 12 41 41 H 1.08997 * 113.61379 * 89.11665 * 23 22 12 42 42 H 1.08990 * 113.61230 * 334.48641 * 24 12 11 43 43 H 1.09003 * 113.61176 * 105.38402 * 24 12 11 44 44 H 1.07999 * 120.08023 * 179.72618 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0587 0.0000 4 6 3.5635 0.9105 0.0005 5 6 4.5762 1.8952 0.0011 6 6 5.8864 1.5398 0.0011 7 6 6.2598 0.1885 0.0010 8 6 7.6874 -0.1856 0.0004 9 8 8.0086 -1.3583 0.0007 10 7 8.6351 0.7727 0.0004 11 6 10.0523 0.4014 -0.0007 12 6 10.9097 1.6618 -0.1309 13 7 10.4681 2.5405 -1.2168 14 6 10.5696 2.1254 -2.5178 15 1 11.0559 1.1893 -2.7495 16 6 10.0475 2.9077 -3.5387 17 7 9.4544 4.0482 -3.2563 18 14 10.1854 2.3411 -5.3133 19 1 10.8902 1.0349 -5.3626 20 1 8.8261 2.1928 -5.8927 21 1 10.9500 3.3455 -6.0956 22 6 11.1364 2.3953 1.2016 23 6 12.5821 2.6331 0.7343 24 6 12.4215 1.3800 -0.1428 25 6 5.2789 -0.7989 -0.0041 26 6 3.9368 -0.4402 0.0013 27 16 2.4672 -1.4107 0.0006 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8899 0.5142 30 1 -0.3634 0.8902 0.5136 31 1 4.3056 2.9407 0.0017 32 1 6.6483 2.3053 0.0012 33 1 8.3789 1.7082 0.0013 34 1 10.2531 -0.2631 -0.8411 35 1 10.2951 -0.1085 0.9317 36 1 10.1001 3.4148 -1.0140 37 1 9.0898 4.5951 -3.9697 38 1 10.5533 3.3109 1.3006 39 1 11.0607 1.7476 2.0749 40 1 13.3214 2.5193 1.5271 41 1 12.7107 3.5524 0.1630 42 1 12.6971 0.4547 0.3629 43 1 12.8758 1.4761 -1.1290 44 1 5.5604 -1.8415 -0.0087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326911308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:38 Heat of formation + Delta-G solvation = 53.208998 kcal Electronic energy + Delta-G solvation = -27181.875297 eV Core-core repulsion = 23419.567087 eV Total energy + Delta-G solvation = -3762.308210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.66374 -39.50967 -38.53583 -36.74741 -34.06126 -33.27449 -31.90911 -31.23646 -30.06979 -28.94253 -26.98419 -25.31023 -24.42064 -23.94068 -23.08495 -21.63687 -21.37285 -20.06708 -18.85444 -18.26370 -17.44305 -17.13493 -16.17020 -15.95214 -15.39190 -15.28175 -14.95850 -14.70575 -14.48426 -14.08276 -14.03820 -13.76079 -13.48236 -13.37149 -13.27499 -13.19005 -12.75252 -12.52949 -12.42718 -12.19983 -11.77716 -11.45402 -11.24852 -11.04915 -10.99979 -10.86924 -10.38498 -10.32106 -10.26558 -10.15789 -9.85287 -9.76695 -9.65418 -9.49893 -8.93756 -8.80484 -8.49125 -8.23394 -7.10384 -5.87256 -3.17176 0.03668 1.00823 1.06705 1.49458 1.90782 3.10261 3.38619 3.46574 3.47073 3.55484 3.63331 3.85888 4.43791 4.50609 4.71990 4.87857 4.95931 5.05599 5.07756 5.14468 5.15692 5.20845 5.26428 5.35081 5.42531 5.47152 5.53679 5.71348 5.75075 5.93978 6.00830 6.08957 6.11064 6.16658 6.19686 6.30688 6.34676 6.45813 6.48902 6.68928 6.82003 6.95402 7.04003 7.40834 7.67726 7.96860 8.31084 8.58070 9.43215 9.94847 10.30349 11.34556 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.002963 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.994242 B = 9447.895538 C =10567.761157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.090 3.910 3 N -0.470 5.470 4 C 0.101 3.899 5 C -0.069 4.069 6 C -0.068 4.068 7 C -0.107 4.107 8 C 0.555 3.445 9 O -0.552 6.552 10 N -0.689 5.689 11 C 0.121 3.879 12 C 0.172 3.828 13 N -0.699 5.699 14 C -0.234 4.234 15 H 0.071 0.929 16 C -0.007 4.007 17 N -0.930 5.930 18 Si 0.902 3.098 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.145 4.145 23 C -0.129 4.129 24 C -0.150 4.150 25 C -0.011 4.011 26 C -0.194 4.194 27 S 0.102 5.898 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.404 0.596 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.543 -6.467 10.938 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.194 4.194 3 N -0.184 5.184 4 C -0.019 4.019 5 C -0.090 4.090 6 C -0.090 4.090 7 C -0.114 4.114 8 C 0.341 3.659 9 O -0.432 6.432 10 N -0.338 5.338 11 C -0.005 4.005 12 C 0.079 3.921 13 N -0.340 5.340 14 C -0.364 4.364 15 H 0.089 0.911 16 C -0.203 4.203 17 N -0.578 5.578 18 Si 0.733 3.267 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.182 4.182 23 C -0.166 4.166 24 C -0.190 4.190 25 C -0.034 4.034 26 C -0.312 4.312 27 S 0.358 5.642 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.241 0.759 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.221 0.779 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.839 -7.893 10.754 18.515 hybrid contribution 0.436 1.210 -1.200 1.759 sum -12.403 -6.684 9.554 17.023 Atomic orbital electron populations 1.20570 0.84786 1.04540 1.04354 1.26809 1.01844 0.90966 0.99792 1.66138 1.04236 1.31282 1.16755 1.19297 0.89033 0.91740 1.01864 1.20295 0.90131 0.98741 0.99869 1.20962 0.96271 0.95493 0.96262 1.19996 0.93735 0.93552 1.04116 1.17946 0.84970 0.85759 0.77256 1.90741 1.82876 1.18158 1.51401 1.45630 1.06379 1.09673 1.72156 1.21858 0.79566 0.98636 1.00482 1.20857 0.92080 0.90081 0.89090 1.42072 1.74551 1.16692 1.00713 1.19122 1.30540 1.04067 0.82710 0.91136 1.24689 1.00613 0.97147 0.97855 1.69641 1.43427 1.13203 1.31506 0.86195 0.77256 0.77818 0.85411 1.20509 1.21881 1.21883 1.23202 0.97602 1.00524 0.96918 1.22632 0.95890 0.99271 0.98818 1.23297 0.98347 0.96800 1.00595 1.20384 0.88089 1.00447 0.94500 1.23684 0.98685 0.96631 1.12230 1.83893 0.95588 1.10393 1.74337 0.89078 0.89712 0.88924 0.84078 0.83782 0.75945 0.91472 0.92586 0.77903 0.93519 0.91643 0.90400 0.92727 0.90023 0.91280 0.90675 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.44 36.00 0.38 -0.15 16 2 C 0.09 0.97 7.29 -13.85 -0.10 0.87 16 3 N -0.47 -6.43 10.56 -8.96 -0.09 -6.53 16 4 C 0.10 1.47 7.00 -84.88 -0.59 0.88 16 5 C -0.07 -0.96 10.03 -39.33 -0.39 -1.35 16 6 C -0.07 -0.97 9.44 -39.74 -0.38 -1.35 16 7 C -0.11 -1.69 5.87 -105.00 -0.62 -2.31 16 8 C 0.55 10.01 7.76 -12.45 -0.10 9.91 16 9 O -0.55 -11.37 16.33 5.29 0.09 -11.29 16 10 N -0.69 -11.99 5.33 -61.33 -0.33 -12.31 16 11 C 0.12 2.15 5.03 -4.04 -0.02 2.13 16 12 C 0.17 3.03 0.90 -131.00 -0.12 2.92 16 13 N -0.70 -15.28 4.58 -46.48 -0.21 -15.49 16 14 C -0.23 -5.93 9.25 -15.06 -0.14 -6.07 16 15 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 16 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 17 N -0.93 -26.03 13.06 55.49 0.72 -25.30 16 18 Si 0.90 21.93 29.55 -169.99 -5.02 16.91 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 C -0.14 -2.13 7.37 -25.92 -0.19 -2.32 16 23 C -0.13 -1.93 7.99 -25.91 -0.21 -2.14 16 24 C -0.15 -2.48 7.28 -25.91 -0.19 -2.67 16 25 C -0.01 -0.16 9.62 -38.98 -0.37 -0.54 16 26 C -0.19 -2.72 6.54 -38.61 -0.25 -2.97 16 27 S 0.10 1.11 23.11 -107.50 -2.48 -1.38 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.14 1.90 6.38 -52.49 -0.33 1.56 16 33 H 0.40 6.72 6.14 -40.82 -0.25 6.47 16 34 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 35 H 0.06 0.91 7.95 -51.92 -0.41 0.50 16 36 H 0.39 8.97 7.87 -40.82 -0.32 8.64 16 37 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 39 H 0.08 1.01 7.97 -51.93 -0.41 0.60 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 43 H 0.07 1.40 7.83 -51.93 -0.41 1.00 16 44 H 0.14 2.06 7.64 -52.49 -0.40 1.66 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -30.92 382.18 -10.85 -41.76 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -5.89 Total: 13.30 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -3.39 Total: -5.43 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.09 Total: -59.63 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.48 Total: -1.38 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.92 -10.85 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326911308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.973 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds