Wall clock time and date at job start Wed Apr 1 2020 03:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38079 * 120.02589 * 2 1 4 4 C 1.38500 * 120.05247 * 179.97438 * 3 2 1 5 5 F 1.35106 * 119.94557 * 179.97438 * 4 3 2 6 6 C 1.38546 * 120.11234 * 0.02562 * 4 3 2 7 7 C 1.38032 * 120.05226 * 359.74165 * 6 4 3 8 8 C 1.38956 * 120.02767 * 179.97438 * 2 1 3 9 9 N 1.39747 * 120.05556 * 359.97438 * 8 2 1 10 10 C 1.37032 * 120.00088 * 90.00120 * 9 8 2 11 11 H 1.07999 * 119.99834 * 313.04583 * 10 9 8 12 12 C 1.38877 * 120.00267 * 133.04267 * 10 9 8 13 13 N 1.31447 * 120.00122 * 170.71368 * 12 10 9 14 14 Si 1.86804 * 119.99742 * 350.71191 * 12 10 9 15 15 H 1.48499 * 109.47213 * 95.34267 * 14 12 10 16 16 H 1.48500 * 109.46920 * 215.34244 * 14 12 10 17 17 H 1.48497 * 109.47179 * 335.34230 * 14 12 10 18 18 C 1.34773 * 120.00417 * 269.99765 * 9 8 2 19 19 O 1.21684 * 120.00705 * 184.18374 * 18 9 8 20 20 C 1.46820 * 119.99501 * 4.18987 * 18 9 8 21 21 C 1.41730 * 126.57304 * 354.44448 * 20 18 9 22 22 N 1.30560 * 108.19531 * 179.97438 * 21 20 18 23 23 N 1.39353 * 109.08942 * 359.95807 * 22 21 20 24 24 C 1.35169 * 108.46742 * 0.10575 * 23 22 21 25 25 O 1.35451 * 123.87033 * 179.87754 * 24 23 22 26 26 C 1.43537 * 115.05672 * 344.47711 * 25 24 23 27 27 C 1.53254 * 109.22954 * 46.88209 * 26 25 24 28 28 C 1.46791 * 127.97290 * 180.17867 * 23 22 21 29 29 H 1.09006 * 109.46886 * 270.01460 * 1 2 3 30 30 H 1.08998 * 109.47471 * 30.01669 * 1 2 3 31 31 H 1.09004 * 109.47347 * 150.02021 * 1 2 3 32 32 H 1.07995 * 119.97194 * 359.96585 * 3 2 1 33 33 H 1.08000 * 119.97440 * 180.02562 * 6 4 3 34 34 H 1.08005 * 120.02979 * 180.27033 * 7 6 4 35 35 H 0.97007 * 120.00058 * 180.02562 * 13 12 10 36 36 H 1.07999 * 125.90330 * 359.97438 * 21 20 18 37 37 H 1.09000 * 109.52222 * 166.82158 * 26 25 24 38 38 H 1.09001 * 109.52089 * 286.94173 * 26 25 24 39 39 H 1.08992 * 109.51082 * 55.84846 * 27 26 25 40 40 H 1.08997 * 109.50386 * 175.98610 * 27 26 25 41 41 H 1.09002 * 109.76134 * 282.49248 * 28 23 22 42 42 H 1.08998 * 109.76430 * 43.20192 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1955 0.0000 4 6 3.5829 1.1961 0.0005 5 9 4.2568 2.3671 0.0000 6 6 4.2786 -0.0020 0.0005 7 6 3.5924 -1.1997 0.0054 8 6 2.2024 -1.2031 0.0005 9 7 1.5054 -2.4143 0.0016 10 6 1.1632 -3.0090 -1.1846 11 1 0.7116 -2.4234 -1.9717 12 6 1.3973 -4.3646 -1.3747 13 7 0.9082 -4.9742 -2.4316 14 14 2.4072 -5.3218 -0.1284 15 1 1.4984 -5.9839 0.8416 16 1 3.2153 -6.3505 -0.8313 17 1 3.3110 -4.3920 0.5954 18 6 1.1698 -2.9977 1.1693 19 8 0.6307 -4.0886 1.1717 20 6 1.4544 -2.3168 2.4385 21 6 2.1695 -1.1044 2.6046 22 7 2.2099 -0.8263 3.8796 23 7 1.5372 -1.8223 4.5848 24 6 1.0764 -2.7357 3.7014 25 8 0.3767 -3.8407 4.0537 26 6 0.4400 -4.1818 5.4466 27 6 0.1955 -2.9231 6.2860 28 6 1.3293 -1.9190 6.0347 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6579 2.1307 -0.0006 33 1 5.3586 0.0011 0.0014 34 1 4.1351 -2.1335 0.0098 35 1 1.0713 -5.9212 -2.5642 36 1 2.6056 -0.5128 1.8132 37 1 -0.3236 -4.9255 5.6745 38 1 1.4246 -4.5881 5.6777 39 1 -0.7563 -2.4749 6.0013 40 1 0.1717 -3.1893 7.3427 41 1 2.2431 -2.2682 6.5156 42 1 1.0532 -0.9428 6.4334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338111164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:56 Heat of formation + Delta-G solvation = 3.215239 kcal Electronic energy + Delta-G solvation = -31701.523727 eV Core-core repulsion = 27370.834450 eV Total energy + Delta-G solvation = -4330.689278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.82420 -43.09685 -41.58720 -39.61723 -39.55528 -36.28482 -35.64978 -34.26280 -33.66673 -31.98016 -30.91782 -30.48542 -28.12823 -27.43309 -26.84991 -24.74258 -23.89865 -23.09738 -22.68841 -21.59065 -20.71702 -19.64853 -19.16495 -18.36190 -18.07570 -17.75399 -17.50332 -17.04886 -16.65142 -16.53667 -16.03993 -15.85943 -15.78429 -15.57368 -15.32419 -15.26692 -15.06263 -14.72256 -14.56796 -14.35924 -14.17585 -13.98118 -13.55669 -13.45681 -13.09249 -12.82299 -12.71222 -12.61673 -12.39550 -12.31160 -12.26251 -12.16093 -11.86176 -11.79852 -10.97391 -10.62716 -10.30431 -9.91499 -9.81834 -9.49794 -9.37354 -8.41777 -6.28891 0.06242 0.19540 0.42077 0.98302 1.07312 1.26479 1.38617 1.53674 1.99466 2.27126 2.47806 2.57657 2.63113 3.02375 3.13984 3.23645 3.47789 3.64421 3.77117 3.84640 3.89750 3.97248 4.05206 4.15820 4.19242 4.23223 4.38249 4.47064 4.51457 4.54486 4.65797 4.74064 4.76372 4.86568 4.89090 5.04166 5.09496 5.17983 5.28012 5.34031 5.57206 5.66833 5.78529 5.97290 6.16751 6.39295 6.75636 6.78967 7.25951 7.79131 8.64759 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008623 B = 0.006676 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.318198 B = 4193.285894 C = 6477.803241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.067 4.067 3 C -0.135 4.135 4 C 0.095 3.905 5 F -0.135 7.135 6 C -0.138 4.138 7 C -0.109 4.109 8 C 0.122 3.878 9 N -0.435 5.435 10 C -0.327 4.327 11 H 0.076 0.924 12 C 0.044 3.956 13 N -0.910 5.910 14 Si 0.982 3.018 15 H -0.286 1.286 16 H -0.311 1.311 17 H -0.280 1.280 18 C 0.544 3.456 19 O -0.576 6.576 20 C -0.329 4.329 21 C 0.090 3.910 22 N -0.289 5.289 23 N -0.389 5.389 24 C 0.326 3.674 25 O -0.296 6.296 26 C 0.024 3.976 27 C -0.162 4.162 28 C 0.113 3.887 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.124 0.876 35 H 0.274 0.726 36 H 0.209 0.791 37 H 0.144 0.856 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.160 0.840 41 H 0.113 0.887 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.203 11.365 19.432 22.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.069 4.069 3 C -0.154 4.154 4 C 0.076 3.924 5 F -0.113 7.113 6 C -0.158 4.158 7 C -0.129 4.129 8 C 0.031 3.969 9 N -0.154 5.154 10 C -0.453 4.453 11 H 0.094 0.906 12 C -0.159 4.159 13 N -0.548 5.548 14 Si 0.816 3.184 15 H -0.215 1.215 16 H -0.242 1.242 17 H -0.205 1.205 18 C 0.338 3.662 19 O -0.462 6.462 20 C -0.343 4.343 21 C -0.097 4.097 22 N -0.112 5.112 23 N -0.184 5.184 24 C 0.152 3.848 25 O -0.201 6.201 26 C -0.050 4.050 27 C -0.200 4.200 28 C -0.005 4.005 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.187 0.813 33 H 0.184 0.816 34 H 0.142 0.858 35 H 0.084 0.916 36 H 0.225 0.775 37 H 0.161 0.839 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.178 0.822 41 H 0.131 0.869 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.122 11.299 20.228 23.379 hybrid contribution 0.043 -1.539 -0.671 1.679 sum 3.165 9.760 19.557 22.085 Atomic orbital electron populations 1.20719 0.89903 1.03443 1.02460 1.20116 0.97489 0.91152 0.98096 1.21094 0.92180 0.98969 1.03177 1.17618 0.90077 0.81191 1.03541 1.91499 1.80267 1.45595 1.93988 1.21163 1.02138 0.89520 1.02935 1.21380 0.93022 0.99054 0.99430 1.18109 0.91166 0.86611 1.01004 1.40791 1.50520 1.19750 1.04328 1.18622 1.41234 0.93255 0.92147 0.90591 1.25932 0.95454 0.98018 0.96536 1.69752 1.44102 1.11421 1.29509 0.85091 0.76653 0.78199 0.78435 1.21471 1.24240 1.20538 1.17715 0.79375 0.85610 0.83487 1.90483 1.47129 1.21848 1.86729 1.19287 1.19505 1.04206 0.91349 1.24942 0.95997 0.94001 0.94775 1.76952 1.18869 1.10578 1.04762 1.49388 1.43857 1.16820 1.08347 1.19678 0.90652 0.84576 0.89927 1.86751 1.64566 1.38086 1.30698 1.23755 1.05766 0.99349 0.76124 1.22688 0.98375 0.93824 1.05088 1.22582 1.01466 1.03919 0.72491 0.91128 0.88348 0.93350 0.81310 0.81613 0.85844 0.91630 0.77532 0.83863 0.89912 0.89748 0.82207 0.86891 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.60 9.77 71.24 0.70 -2.90 16 2 C -0.07 -2.27 4.38 -19.73 -0.09 -2.36 16 3 C -0.14 -3.61 9.29 22.29 0.21 -3.40 16 4 C 0.09 2.52 7.08 22.41 0.16 2.68 16 5 F -0.13 -3.34 17.27 44.97 0.78 -2.56 16 6 C -0.14 -3.85 9.63 22.29 0.21 -3.64 16 7 C -0.11 -3.95 8.62 22.41 0.19 -3.75 16 8 C 0.12 4.98 2.73 38.24 0.10 5.08 16 9 N -0.44 -22.14 1.30 -462.87 -0.60 -22.75 16 10 C -0.33 -19.29 9.07 84.03 0.76 -18.53 16 11 H 0.08 4.73 8.02 -2.91 -0.02 4.71 16 12 C 0.04 2.75 5.11 84.90 0.43 3.19 16 13 N -0.91 -58.12 13.96 21.65 0.30 -57.82 16 14 Si 0.98 55.44 24.29 68.60 1.67 57.11 16 15 H -0.29 -17.36 6.35 99.48 0.63 -16.73 16 16 H -0.31 -16.78 7.11 99.48 0.71 -16.08 16 17 H -0.28 -15.10 6.87 99.48 0.68 -14.42 16 18 C 0.54 28.55 5.74 86.49 0.50 29.04 16 19 O -0.58 -34.72 11.49 -2.44 -0.03 -34.75 16 20 C -0.33 -14.30 6.04 -20.15 -0.12 -14.42 16 21 C 0.09 3.31 9.85 85.74 0.84 4.15 16 22 N -0.29 -9.43 12.54 -55.92 -0.70 -10.13 16 23 N -0.39 -11.24 4.04 -456.59 -1.84 -13.08 16 24 C 0.33 12.21 7.50 84.20 0.63 12.84 16 25 O -0.30 -10.58 10.19 -85.63 -0.87 -11.45 16 26 C 0.02 0.45 7.01 72.07 0.51 0.96 16 27 C -0.16 -1.81 6.17 30.85 0.19 -1.62 16 28 C 0.11 1.70 7.40 86.50 0.64 2.34 16 29 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.10 2.50 8.09 -2.39 -0.02 2.48 16 31 H 0.05 2.00 6.89 -2.39 -0.02 1.98 16 32 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 35 H 0.27 16.55 8.31 -92.70 -0.77 15.78 16 36 H 0.21 7.18 2.56 -2.91 -0.01 7.17 16 37 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.16 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -85.41 345.82 5.54 -79.87 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 0.98 Total: 5.91 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 5.87 Total: 9.65 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -2.85 Total: -103.78 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -0.90 Total: -46.20 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 55.44 SS G_CDS: 1.67 Total: 57.11 kcal Total: -85.41 5.54 -79.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338111164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.082 kcal (2) G-P(sol) polarization free energy of solvation -85.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds