Wall clock time and date at job start Wed Apr 1 2020 03:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35315 * 126.12628 * 2 1 4 4 C 1.39869 * 107.91939 * 180.14133 * 3 2 1 5 5 C 1.50703 * 125.89821 * 179.86325 * 4 3 2 6 6 C 1.53000 * 109.46694 * 124.71691 * 5 4 3 7 7 N 1.46505 * 109.46891 * 179.97438 * 6 5 4 8 8 C 1.34769 * 120.00119 * 180.27562 * 7 6 5 9 9 O 1.21556 * 120.00206 * 359.72625 * 8 7 6 10 10 C 1.47866 * 120.00203 * 179.72414 * 8 7 6 11 11 C 1.39675 * 120.09947 * 359.72849 * 10 8 7 12 12 C 1.38040 * 120.03906 * 179.74528 * 11 10 8 13 13 C 1.38179 * 120.24069 * 0.55064 * 12 11 10 14 14 C 1.39178 * 120.20285 * 359.69788 * 13 12 11 15 15 S 1.76203 * 120.02087 * 179.97438 * 14 13 12 16 16 C 1.76198 * 100.00051 * 265.53320 * 15 14 13 17 17 H 1.07994 * 120.00341 * 5.11460 * 16 15 14 18 18 C 1.38728 * 120.00108 * 185.12102 * 16 15 14 19 19 N 1.31624 * 120.00303 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00014 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47082 * 90.00017 * 20 18 16 22 22 H 1.48499 * 109.47208 * 210.00504 * 20 18 16 23 23 H 1.48503 * 109.46879 * 330.00212 * 20 18 16 24 24 C 1.38873 * 119.96087 * 0.02685 * 14 13 12 25 25 N 1.30835 * 108.20140 * 359.60111 * 4 3 2 26 26 N 1.34948 * 126.12600 * 179.70199 * 2 1 3 27 27 C 1.46502 * 126.03961 * 0.02562 * 26 2 1 28 28 H 1.08996 * 109.47316 * 270.28848 * 1 2 3 29 29 H 1.09002 * 109.47435 * 30.29686 * 1 2 3 30 30 H 1.09006 * 109.46764 * 150.29083 * 1 2 3 31 31 H 1.08004 * 126.03812 * 0.02880 * 3 2 1 32 32 H 1.08997 * 109.46703 * 4.72244 * 5 4 3 33 33 H 1.08995 * 109.47159 * 244.71574 * 5 4 3 34 34 H 1.09003 * 109.47341 * 60.00425 * 6 5 4 35 35 H 1.08995 * 109.47222 * 299.99844 * 6 5 4 36 36 H 0.97001 * 119.99984 * 0.02562 * 7 6 5 37 37 H 1.08005 * 119.98038 * 359.97438 * 11 10 8 38 38 H 1.07995 * 119.87707 * 180.25480 * 12 11 10 39 39 H 1.08001 * 119.89346 * 179.72390 * 13 12 11 40 40 H 0.97001 * 119.99880 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.12302 * 180.02562 * 24 14 13 42 42 H 1.08998 * 109.46611 * 270.02418 * 27 26 2 43 43 H 1.08999 * 109.47240 * 30.01873 * 27 26 2 44 44 H 1.09000 * 109.47312 * 150.02391 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6560 -0.0033 5 6 4.8543 1.5395 -0.0073 6 6 5.7523 1.1739 1.1762 7 7 6.9394 2.0324 1.1720 8 6 7.8803 1.8860 2.1256 9 8 7.7417 1.0449 2.9922 10 6 9.0815 2.7484 2.1178 11 6 9.2457 3.7116 1.1198 12 6 10.3649 4.5196 1.1167 13 6 11.3322 4.3723 2.0924 14 6 11.1813 3.4122 3.0886 15 16 12.4181 3.2281 4.3301 16 6 13.3827 1.9401 3.6123 17 1 13.1516 1.5810 2.6204 18 6 14.4391 1.3872 4.3214 19 7 15.1594 0.4247 3.7855 20 14 14.8394 2.0087 6.0370 21 1 14.0788 1.2198 7.0392 22 1 16.2949 1.8593 6.2905 23 1 14.4626 3.4410 6.1450 24 6 10.0559 2.5987 3.1031 25 7 3.6333 -0.6524 0.0035 26 7 2.3026 -1.0900 0.0057 27 6 1.8539 -2.4846 0.0124 28 1 -0.3634 0.0052 1.0276 29 1 -0.3634 0.8873 -0.5184 30 1 -0.3633 -0.8926 -0.5093 31 1 1.9740 2.1211 0.0004 32 1 4.5483 2.5822 0.0773 33 1 5.4034 1.3962 -0.9379 34 1 6.0582 0.1311 1.0917 35 1 5.2031 1.3172 2.1068 36 1 7.0499 2.7038 0.4807 37 1 8.4947 3.8269 0.3521 38 1 10.4873 5.2663 0.3461 39 1 12.2078 5.0045 2.0820 40 1 15.8983 0.0384 4.2812 41 1 9.9360 1.8532 3.8752 42 1 1.7419 -2.8252 1.0417 43 1 0.8958 -2.5605 -0.5017 44 1 2.5902 -3.1057 -0.4977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462658451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:07 Heat of formation + Delta-G solvation = 30.604396 kcal Electronic energy + Delta-G solvation = -25383.689928 eV Core-core repulsion = 21620.401509 eV Total energy + Delta-G solvation = -3763.288419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.24669 -41.23565 -39.24000 -36.87020 -34.84543 -34.72682 -32.86746 -32.70066 -31.97745 -31.04002 -27.96564 -27.92888 -27.26389 -25.31554 -24.09320 -23.36774 -21.87380 -21.30945 -20.37357 -19.86595 -18.92387 -17.66701 -17.29511 -17.15857 -17.00068 -16.69869 -16.56488 -16.41897 -15.72944 -15.23786 -15.13493 -15.00823 -14.88093 -14.69824 -14.51037 -14.01426 -13.93624 -13.67411 -13.65398 -13.51902 -13.24021 -13.14923 -13.08117 -12.89121 -12.77551 -12.67119 -12.44648 -12.27996 -11.85795 -11.46345 -11.25331 -11.21222 -10.93526 -10.33110 -10.07440 -9.92256 -9.74650 -9.43469 -9.14940 -8.54641 -6.28861 -0.20967 0.21126 0.89261 1.05811 1.30757 1.43209 1.60343 1.65285 1.72210 1.77157 2.10176 2.21048 2.59427 2.83361 2.96644 3.52954 3.64473 3.73272 3.91305 3.95841 4.05468 4.07603 4.11298 4.31820 4.32571 4.37626 4.45646 4.49936 4.61446 4.63610 4.70817 4.76271 4.82252 4.89929 4.96525 4.99736 5.08447 5.20347 5.27350 5.30588 5.31793 5.44416 5.67903 5.70084 5.83903 6.09252 6.16368 6.45195 6.76113 6.87609 7.12024 8.58961 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.019936 B = 0.001779 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.189376 B =15733.565471 C =16559.383856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.079 3.921 3 C -0.286 4.286 4 C 0.064 3.936 5 C -0.036 4.036 6 C 0.133 3.867 7 N -0.703 5.703 8 C 0.560 3.440 9 O -0.586 6.586 10 C -0.158 4.158 11 C -0.057 4.057 12 C -0.120 4.120 13 C -0.058 4.058 14 C -0.121 4.121 15 S -0.115 6.115 16 C -0.526 4.526 17 H 0.045 0.955 18 C 0.040 3.960 19 N -0.919 5.919 20 Si 0.923 3.077 21 H -0.264 1.264 22 H -0.256 1.256 23 H -0.226 1.226 24 C -0.045 4.045 25 N -0.341 5.341 26 N -0.383 5.383 27 C 0.090 3.910 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.421 0.579 37 H 0.180 0.820 38 H 0.180 0.820 39 H 0.141 0.859 40 H 0.278 0.722 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.118 0.882 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.444 6.351 -13.586 35.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C -0.314 4.314 4 C -0.101 4.101 5 C -0.075 4.075 6 C 0.009 3.991 7 N -0.356 5.356 8 C 0.348 3.652 9 O -0.468 6.468 10 C -0.163 4.163 11 C -0.075 4.075 12 C -0.140 4.140 13 C -0.079 4.079 14 C -0.232 4.232 15 S 0.119 5.881 16 C -0.673 4.673 17 H 0.064 0.936 18 C -0.165 4.165 19 N -0.557 5.557 20 Si 0.744 3.256 21 H -0.188 1.188 22 H -0.180 1.180 23 H -0.149 1.149 24 C -0.067 4.067 25 N -0.164 5.164 26 N -0.166 5.166 27 C -0.050 4.050 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.186 0.814 32 H 0.141 0.859 33 H 0.119 0.881 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.260 0.740 37 H 0.197 0.803 38 H 0.198 0.802 39 H 0.159 0.841 40 H 0.087 0.913 41 H 0.122 0.878 42 H 0.099 0.901 43 H 0.136 0.864 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -31.575 4.940 -11.949 34.120 hybrid contribution 0.291 -0.676 -0.459 0.867 sum -31.284 4.264 -12.408 33.924 Atomic orbital electron populations 1.20600 0.84302 1.05367 1.04421 1.21821 0.96541 0.86759 0.99731 1.21485 0.90936 1.00472 1.18554 1.22323 0.96555 0.91423 0.99847 1.20180 0.90220 0.99106 0.98028 1.21167 0.85048 0.93741 0.99169 1.45589 1.20710 1.39352 1.29999 1.18451 0.83088 0.82416 0.81204 1.90766 1.79127 1.37551 1.39309 1.19923 0.95668 1.01141 0.99550 1.21805 0.98354 0.91611 0.95747 1.21595 0.92833 1.00656 0.98867 1.22105 0.99292 0.94891 0.91568 1.22076 0.97937 1.01047 1.02130 1.82585 1.26964 1.48897 1.29663 1.22398 1.17896 1.22575 1.04415 0.93640 1.25753 0.94450 0.93726 1.02609 1.70036 1.19879 1.25508 1.40234 0.85755 0.79272 0.81904 0.78712 1.18830 1.17998 1.14902 1.21640 0.92131 0.95919 0.96977 1.77313 0.98437 1.13642 1.27055 1.48783 1.03240 1.07577 1.57012 1.22137 1.02205 0.76345 1.04286 0.89219 0.88081 0.89564 0.81401 0.85893 0.88123 0.93632 0.92673 0.73992 0.80321 0.80226 0.84111 0.91265 0.87843 0.90140 0.86376 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 10.12 71.24 0.72 0.30 16 2 C 0.08 1.12 6.93 41.41 0.29 1.41 16 3 C -0.29 -4.48 10.64 21.99 0.23 -4.25 16 4 C 0.06 1.27 6.49 43.10 0.28 1.55 16 5 C -0.04 -0.52 5.91 29.85 0.18 -0.35 16 6 C 0.13 3.00 5.63 86.38 0.49 3.48 16 7 N -0.70 -15.33 5.51 -465.95 -2.57 -17.89 16 8 C 0.56 18.70 7.77 86.79 0.67 19.38 16 9 O -0.59 -25.87 16.34 -3.89 -0.06 -25.93 16 10 C -0.16 -5.23 5.87 -20.11 -0.12 -5.35 16 11 C -0.06 -1.27 9.54 22.57 0.22 -1.05 16 12 C -0.12 -2.79 10.02 22.21 0.22 -2.57 16 13 C -0.06 -1.94 9.79 22.48 0.22 -1.72 16 14 C -0.12 -5.26 5.45 22.65 0.12 -5.14 16 15 S -0.11 -5.86 19.38 -56.49 -1.09 -6.96 16 16 C -0.53 -32.34 10.01 67.94 0.68 -31.66 16 17 H 0.05 3.09 8.02 -2.91 -0.02 3.07 16 18 C 0.04 2.40 5.50 84.84 0.47 2.87 16 19 N -0.92 -58.12 13.97 21.64 0.30 -57.82 16 20 Si 0.92 44.99 27.74 68.60 1.90 46.89 16 21 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.23 -10.42 6.74 99.48 0.67 -9.75 16 24 C -0.04 -1.93 9.34 22.70 0.21 -1.71 16 25 N -0.34 -8.33 12.54 -47.38 -0.59 -8.93 16 26 N -0.38 -6.91 4.01 -356.03 -1.43 -8.34 16 27 C 0.09 0.89 11.27 127.77 1.44 2.33 16 28 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.09 0.13 7.08 -2.38 -0.02 0.12 16 31 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.12 0.97 8.12 -2.39 -0.02 0.96 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.42 5.20 6.50 -92.71 -0.60 4.59 16 37 H 0.18 1.88 6.40 -2.91 -0.02 1.86 16 38 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 39 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.28 16.13 8.31 -92.71 -0.77 15.35 16 41 H 0.10 5.08 7.65 -2.91 -0.02 5.05 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.12 0.33 7.05 -2.39 -0.02 0.31 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -91.56 391.01 3.17 -88.39 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.39 Total: 13.07 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 6.32 Total: -22.49 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -4.29 Total: -92.98 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.06 Total: -25.93 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -1.09 Total: -6.96 kcal Total: -91.56 3.17 -88.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462658451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.997 kcal (2) G-P(sol) polarization free energy of solvation -91.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds