Wall clock time and date at job start Wed Apr 1 2020 02:59:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86806 * 120.00431 * 2 1
4 4 H 1.48497 * 109.47228 * 270.00269 * 3 2 1
5 5 H 1.48499 * 109.46828 * 30.00261 * 3 2 1
6 6 H 1.48502 * 109.47200 * 150.00174 * 3 2 1
7 7 C 1.38815 * 120.00195 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99738 * 359.97438 * 7 2 1
9 9 N 1.36930 * 120.00439 * 179.97438 * 7 2 1
10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7
12 12 H 1.09005 * 110.43391 * 307.53554 * 11 10 9
13 13 C 1.54892 * 110.48790 * 70.22392 * 11 10 9
14 14 C 1.54892 * 102.74537 * 156.62129 * 13 11 10
15 15 C 1.54264 * 104.19740 * 322.05738 * 14 13 11
16 16 C 1.53873 * 106.59940 * 23.61232 * 15 14 13
17 17 H 1.08996 * 110.03379 * 119.28795 * 16 15 14
18 18 N 1.46504 * 110.03394 * 240.71488 * 16 15 14
19 19 C 1.34775 * 119.99895 * 272.16973 * 18 16 15
20 20 O 1.21588 * 120.00118 * 359.97438 * 19 18 16
21 21 C 1.47563 * 119.99655 * 179.97438 * 19 18 16
22 22 C 1.40116 * 120.58972 * 359.72447 * 21 19 18
23 23 N 1.30609 * 121.17093 * 179.71189 * 22 21 19
24 24 C 1.34913 * 122.44645 * 0.55506 * 23 22 21
25 25 C 1.40620 * 128.45903 * 179.71267 * 24 23 22
26 26 C 1.32283 * 115.90796 * 180.02562 * 25 24 23
27 27 S 1.75499 * 110.83790 * 0.02562 * 26 25 24
28 28 C 1.40099 * 119.27152 * 359.73556 * 24 23 22
29 29 C 1.39362 * 119.75118 * 359.97438 * 28 24 23
30 30 H 0.97000 * 119.99761 * 359.97438 * 1 2 3
31 31 H 0.97001 * 120.00490 * 359.97438 * 9 7 2
32 32 H 1.09001 * 109.47060 * 300.00287 * 10 9 7
33 33 H 1.09004 * 109.47073 * 59.99776 * 10 9 7
34 34 H 1.09004 * 110.75596 * 274.93646 * 13 11 10
35 35 H 1.08992 * 110.75389 * 38.30384 * 13 11 10
36 36 H 1.09000 * 110.48214 * 203.38065 * 14 13 11
37 37 H 1.09000 * 110.48593 * 80.74090 * 14 13 11
38 38 H 1.09001 * 110.02914 * 264.32888 * 15 14 13
39 39 H 1.08992 * 110.03108 * 142.89691 * 15 14 13
40 40 H 0.97003 * 119.99806 * 92.16440 * 18 16 15
41 41 H 1.07998 * 119.41563 * 359.97438 * 22 21 19
42 42 H 1.07998 * 122.04562 * 0.02562 * 25 24 23
43 43 H 1.08002 * 124.57829 * 180.02562 * 26 25 24
44 44 H 1.08003 * 120.73262 * 180.02562 * 29 28 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4978 2.0464 -1.4000
5 1 1.4478 2.6526 0.7001
6 1 3.5479 1.4401 0.7000
7 6 2.0103 -1.2021 -0.0005
8 1 1.4702 -2.1375 -0.0005
9 7 3.3795 -1.2022 -0.0011
10 6 4.1121 -2.4710 -0.0011
11 6 5.6163 -2.1915 -0.0011
12 1 5.8768 -1.5101 -0.8111
13 6 6.0596 -1.6097 1.3643
14 6 7.5676 -1.9602 1.4116
15 6 7.6508 -3.3611 0.7712
16 6 6.4102 -3.5082 -0.1271
17 1 6.7148 -3.6630 -1.1621
18 7 5.5908 -4.6337 0.3292
19 6 5.8366 -5.8764 -0.1312
20 8 6.7380 -6.0632 -0.9255
21 6 5.0116 -7.0101 0.3288
22 6 3.9735 -6.8097 1.2482
23 7 3.2328 -7.8040 1.6588
24 6 3.4245 -9.0714 1.2380
25 6 2.7128 -10.2296 1.5979
26 6 3.1150 -11.3548 1.0304
27 16 4.4703 -11.0618 -0.0454
28 6 4.4501 -9.3415 0.3225
29 6 5.2553 -8.3024 -0.1403
30 1 -0.4850 0.8401 0.0004
31 1 3.8647 -0.3622 -0.0014
32 1 3.8491 -3.0424 0.8891
33 1 3.8484 -3.0428 -0.8908
34 1 5.9129 -0.5299 1.3901
35 1 5.5249 -2.0929 2.1819
36 1 7.9200 -1.9905 2.4426
37 1 8.1449 -1.2404 0.8312
38 1 7.6433 -4.1271 1.5466
39 1 8.5575 -3.4445 0.1721
40 1 4.8715 -4.4846 0.9626
41 1 3.7796 -5.8148 1.6208
42 1 1.8884 -10.2021 2.2949
43 1 2.6694 -12.3230 1.2054
44 1 6.0501 -8.4926 -0.8464
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001496896682.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:59:06
Heat of formation + Delta-G solvation = 34.702909 kcal
Electronic energy + Delta-G solvation = -27113.866356 eV
Core-core repulsion = 23350.755662 eV
Total energy + Delta-G solvation = -3763.110694 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 345.125 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.03416 -39.88229 -38.08886 -35.98866 -34.62509 -33.69409 -32.81268 -31.60219
-30.39054 -29.09020 -27.71173 -25.32477 -24.68805 -23.96612 -22.24172 -21.99746
-20.87414 -20.45560 -19.49923 -18.88544 -17.74939 -17.13369 -17.10718 -16.42342
-15.91470 -15.33617 -15.11038 -14.81716 -14.73098 -14.39104 -14.33781 -14.01750
-13.88393 -13.47811 -13.27721 -13.17915 -12.93760 -12.67889 -12.50733 -12.07565
-11.85151 -11.57751 -11.48976 -11.04503 -11.01339 -10.93608 -10.78575 -10.56866
-10.50354 -10.43831 -10.31970 -10.12416 -9.66580 -9.61451 -9.22780 -9.00059
-8.92888 -8.39362 -7.27197 -5.79237 -3.15356 -0.16879 0.72035 0.97913
1.44772 1.56521 2.75697 3.00883 3.34863 3.37753 3.43568 3.53803
3.70635 4.25305 4.37727 4.47624 4.53836 4.56763 4.66809 4.69488
4.78295 4.91340 5.08442 5.26020 5.33265 5.41367 5.46269 5.53767
5.54139 5.60945 5.61433 5.70061 5.72977 5.74951 5.81349 5.93666
5.96396 6.07589 6.13555 6.31782 6.34530 6.49176 6.58138 6.64010
7.38694 7.47063 7.95904 8.06249 8.39426 9.18164 9.90344 10.09741
11.39022
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.012051 B = 0.002756 C = 0.002347
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2322.822225 B =10158.553843 C =11929.385346
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C 0.006 3.994
3 Si 0.884 3.116
4 H -0.284 1.284
5 H -0.291 1.291
6 H -0.276 1.276
7 C -0.246 4.246
8 H 0.090 0.910
9 N -0.752 5.752
10 C 0.167 3.833
11 C -0.112 4.112
12 H 0.089 0.911
13 C -0.117 4.117
14 C -0.125 4.125
15 C -0.132 4.132
16 C 0.150 3.850
17 H 0.093 0.907
18 N -0.710 5.710
19 C 0.568 3.432
20 O -0.538 6.538
21 C -0.177 4.177
22 C 0.163 3.837
23 N -0.456 5.456
24 C 0.146 3.854
25 C -0.117 4.117
26 C -0.166 4.166
27 S 0.121 5.879
28 C -0.212 4.212
29 C 0.030 3.970
30 H 0.260 0.740
31 H 0.361 0.639
32 H 0.022 0.978
33 H 0.030 0.970
34 H 0.070 0.930
35 H 0.071 0.929
36 H 0.064 0.936
37 H 0.065 0.935
38 H 0.068 0.932
39 H 0.069 0.931
40 H 0.405 0.595
41 H 0.169 0.831
42 H 0.156 0.844
43 H 0.179 0.821
44 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.931 -20.377 3.575 24.941
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.580 5.580
2 C -0.190 4.190
3 Si 0.715 3.285
4 H -0.211 1.211
5 H -0.218 1.218
6 H -0.203 1.203
7 C -0.376 4.376
8 H 0.108 0.892
9 N -0.398 5.398
10 C 0.040 3.960
11 C -0.132 4.132
12 H 0.107 0.893
13 C -0.154 4.154
14 C -0.163 4.163
15 C -0.170 4.170
16 C 0.045 3.955
17 H 0.111 0.889
18 N -0.363 5.363
19 C 0.354 3.646
20 O -0.416 6.416
21 C -0.186 4.186
22 C -0.010 4.010
23 N -0.164 5.164
24 C 0.012 3.988
25 C -0.148 4.148
26 C -0.303 4.303
27 S 0.384 5.616
28 C -0.329 4.329
29 C 0.000 4.000
30 H 0.070 0.930
31 H 0.194 0.806
32 H 0.039 0.961
33 H 0.047 0.953
34 H 0.088 0.912
35 H 0.090 0.910
36 H 0.083 0.917
37 H 0.084 0.916
38 H 0.086 0.914
39 H 0.088 0.912
40 H 0.243 0.757
41 H 0.186 0.814
42 H 0.174 0.826
43 H 0.196 0.804
44 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges 14.471 -21.490 2.698 26.049
hybrid contribution -0.138 2.072 0.600 2.162
sum 14.333 -19.418 3.298 24.359
Atomic orbital electron populations
1.69701 1.05125 1.25855 1.57366 1.24674 0.95219 0.97217 1.01931
0.86554 0.79217 0.84995 0.77778 1.21107 1.21750 1.20261 1.19041
0.80575 0.94740 1.43240 0.89230 1.42672 1.04011 1.02066 1.91041
1.20572 0.87725 0.89536 0.98208 1.22553 0.96464 0.95292 0.98862
0.89258 1.22560 0.94613 1.01374 0.96860 1.22385 0.97176 0.96251
1.00462 1.22578 0.97708 0.97688 0.99048 1.21649 0.90058 0.84713
0.99100 0.88873 1.46172 1.36455 1.06589 1.47052 1.17791 0.83288
0.82628 0.80938 1.90777 1.31940 1.84591 1.34335 1.20912 1.00563
0.94527 1.02561 1.22944 0.88714 0.98099 0.91208 1.67616 1.26303
0.98097 1.24360 1.19301 0.93182 0.92505 0.93848 1.19695 1.02364
0.89501 1.03226 1.25438 1.00848 1.02769 1.01239 1.84321 1.32666
0.97908 1.46716 1.23551 1.03746 0.99603 1.06041 1.20961 0.95319
0.89218 0.94514 0.93028 0.80579 0.96052 0.95251 0.91150 0.91048
0.91732 0.91611 0.91351 0.91247 0.75674 0.81439 0.82602 0.80401
0.82960
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16
2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16
3 Si 0.88 21.73 27.73 -169.99 -4.71 17.01 16
4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
6 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16
7 C -0.25 -6.81 10.47 -15.06 -0.16 -6.96 16
8 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16
9 N -0.75 -17.04 5.30 -59.90 -0.32 -17.36 16
10 C 0.17 2.96 4.73 -4.04 -0.02 2.94 16
11 C -0.11 -1.56 2.84 -88.96 -0.25 -1.82 16
12 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16
13 C -0.12 -1.49 6.19 -24.74 -0.15 -1.65 16
14 C -0.12 -1.31 6.83 -25.07 -0.17 -1.48 16
15 C -0.13 -1.43 6.59 -25.61 -0.17 -1.60 16
16 C 0.15 1.86 3.12 -66.81 -0.21 1.65 16
17 H 0.09 1.25 7.56 -51.93 -0.39 0.86 16
18 N -0.71 -8.63 4.30 -53.75 -0.23 -8.86 16
19 C 0.57 7.52 7.77 -12.46 -0.10 7.43 16
20 O -0.54 -8.52 16.06 5.29 0.08 -8.44 16
21 C -0.18 -2.15 5.89 -104.87 -0.62 -2.76 16
22 C 0.16 1.94 10.69 -17.37 -0.19 1.75 16
23 N -0.46 -5.94 10.39 -11.01 -0.11 -6.05 16
24 C 0.15 1.71 6.97 -84.91 -0.59 1.12 16
25 C -0.12 -1.05 10.16 -40.61 -0.41 -1.46 16
26 C -0.17 -1.14 11.08 28.81 0.32 -0.82 16
27 S 0.12 0.96 23.29 -107.50 -2.50 -1.54 16
28 C -0.21 -2.32 6.49 -38.47 -0.25 -2.57 16
29 C 0.03 0.34 9.73 -38.65 -0.38 -0.03 16
30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16
31 H 0.36 8.01 5.50 -40.82 -0.22 7.78 16
32 H 0.02 0.37 6.41 -51.93 -0.33 0.03 16
33 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
35 H 0.07 0.93 7.96 -51.93 -0.41 0.51 16
36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
38 H 0.07 0.74 7.92 -51.93 -0.41 0.33 16
39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
40 H 0.40 4.54 4.62 -40.82 -0.19 4.35 16
41 H 0.17 1.68 6.41 -52.49 -0.34 1.35 16
42 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16
43 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16
44 H 0.15 1.60 7.72 -52.48 -0.41 1.19 16
LS Contribution 372.26 15.07 5.61 5.61
Total: -1.00 -33.77 372.26 -10.53 -44.29
By element:
Atomic # 1 Polarization: 15.49 SS G_CDS: -5.68 Total: 9.81 kcal
Atomic # 6 Polarization: -2.76 SS G_CDS: -3.44 Total: -6.19 kcal
Atomic # 7 Polarization: -60.67 SS G_CDS: 0.11 Total: -60.55 kcal
Atomic # 8 Polarization: -8.52 SS G_CDS: 0.08 Total: -8.44 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.01 kcal
Atomic # 16 Polarization: 0.96 SS G_CDS: -2.50 Total: -1.54 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -33.77 -10.53 -44.29 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001496896682.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.996 kcal
(2) G-P(sol) polarization free energy of solvation -33.767 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.229 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.293 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.703 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds