Wall clock time and date at job start Wed Apr 1 2020 02:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00290 * 2 1 4 4 H 1.48493 * 109.47182 * 239.99931 * 3 2 1 5 5 H 1.48499 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46979 * 119.99616 * 3 2 1 7 7 C 1.38812 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00364 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99674 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99467 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46814 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.67189 * 56.78200 * 11 10 9 13 13 C 1.54888 * 110.75784 * 293.54612 * 11 10 9 14 14 C 1.54261 * 104.19672 * 203.55965 * 13 11 10 15 15 C 1.53876 * 106.59990 * 23.60631 * 14 13 11 16 16 C 1.54267 * 106.59870 * 0.02562 * 15 14 13 17 17 H 1.09004 * 110.48597 * 95.06674 * 16 15 14 18 18 N 1.46497 * 110.48629 * 217.71063 * 16 15 14 19 19 C 1.34780 * 120.00146 * 273.54328 * 18 16 15 20 20 O 1.21594 * 119.99547 * 359.97438 * 19 18 16 21 21 C 1.47560 * 120.00189 * 180.02562 * 19 18 16 22 22 C 1.40124 * 120.58596 * 359.72361 * 21 19 18 23 23 N 1.30610 * 121.16486 * 179.71753 * 22 21 19 24 24 C 1.34905 * 122.45122 * 0.55436 * 23 22 21 25 25 C 1.40618 * 128.46071 * 179.71567 * 24 23 22 26 26 C 1.32281 * 115.91223 * 180.02562 * 25 24 23 27 27 S 1.75509 * 110.83600 * 0.02562 * 26 25 24 28 28 C 1.40095 * 119.27087 * 359.74071 * 24 23 22 29 29 C 1.39364 * 119.75336 * 359.97438 * 28 24 23 30 30 H 0.97006 * 120.00055 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00345 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47354 * 59.99744 * 10 9 7 33 33 H 1.08999 * 109.47197 * 299.99913 * 10 9 7 34 34 H 1.09000 * 110.48622 * 84.87747 * 13 11 10 35 35 H 1.09001 * 110.59737 * 322.29391 * 13 11 10 36 36 H 1.08998 * 110.03492 * 264.32506 * 14 13 11 37 37 H 1.08994 * 110.03470 * 142.89082 * 14 13 11 38 38 H 1.08995 * 110.03160 * 119.28453 * 15 14 13 39 39 H 1.08998 * 110.03319 * 240.71542 * 15 14 13 40 40 H 0.96998 * 120.00123 * 93.54999 * 18 16 15 41 41 H 1.07991 * 119.41268 * 359.97438 * 22 21 19 42 42 H 1.07998 * 122.04418 * 0.02562 * 25 24 23 43 43 H 1.07998 * 124.58218 * 180.02562 * 26 25 24 44 44 H 1.07994 * 120.73629 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0027 11 6 1.0636 -4.8197 0.0031 12 1 0.3892 -4.7497 -0.8504 13 6 0.2666 -4.8600 1.3306 14 6 -0.1970 -6.3266 1.4491 15 6 0.7805 -7.1660 0.6078 16 6 1.8044 -6.1803 0.0079 17 1 2.6954 -6.1280 0.6336 18 7 2.1577 -6.5759 -1.3577 19 6 3.1469 -7.4672 -1.5665 20 8 3.7464 -7.9425 -0.6214 21 6 3.5032 -7.8653 -2.9420 22 6 2.8173 -7.3289 -4.0398 23 7 3.1268 -7.6691 -5.2622 24 6 4.1055 -8.5547 -5.5413 25 6 4.5377 -9.0132 -6.7984 26 6 5.5269 -9.8914 -6.7846 27 16 6.0287 -10.2407 -5.1394 28 6 4.8266 -9.1330 -4.4885 29 6 4.5258 -8.7876 -3.1723 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0023 32 1 2.6846 -3.7138 0.8927 33 1 2.6846 -3.7154 -0.8872 34 1 -0.5925 -4.1912 1.2802 35 1 0.9076 -4.5935 2.1710 36 1 -1.2096 -6.4307 1.0594 37 1 -0.1626 -6.6460 2.4906 38 1 1.2892 -7.8927 1.2411 39 1 0.2422 -7.6774 -0.1902 40 1 1.6798 -6.1964 -2.1116 41 1 2.0214 -6.6184 -3.8723 42 1 4.0895 -8.6694 -7.7188 43 1 5.9664 -10.3336 -7.6664 44 1 5.0713 -9.2240 -2.3487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496896684.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:13 Heat of formation + Delta-G solvation = 24.448057 kcal Electronic energy + Delta-G solvation = -26635.655172 eV Core-core repulsion = 22872.099794 eV Total energy + Delta-G solvation = -3763.555378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.05767 -39.74756 -37.99318 -36.05316 -34.51652 -33.74090 -32.88292 -31.41187 -30.44826 -28.59470 -27.57582 -25.37922 -24.53199 -23.98835 -22.32762 -22.03734 -20.93644 -20.31063 -19.73209 -18.66039 -17.52963 -17.16063 -16.82775 -16.56763 -16.19212 -15.35242 -15.00018 -14.80269 -14.52184 -14.43732 -14.36349 -13.75127 -13.68928 -13.31079 -13.27427 -13.19016 -12.97847 -12.86255 -12.21118 -12.13494 -11.95009 -11.55101 -11.32430 -10.97497 -10.90528 -10.84870 -10.75927 -10.48605 -10.37551 -10.33337 -10.24302 -10.00464 -9.74220 -9.69210 -9.24898 -9.00454 -8.86352 -8.46117 -6.91577 -5.76269 -3.04575 -0.23472 0.64300 0.91446 1.38502 1.49995 2.71081 2.98020 3.44841 3.47337 3.49205 3.50148 3.62202 4.18618 4.33525 4.42132 4.54007 4.61126 4.70539 4.74026 4.81385 5.01262 5.03559 5.25906 5.40134 5.43465 5.52044 5.54709 5.61392 5.63623 5.66130 5.73663 5.80784 5.91467 5.99549 6.06998 6.16676 6.20236 6.28471 6.46416 6.55588 6.57476 6.75858 6.88811 7.35087 7.39486 7.70498 8.04334 8.42914 9.54238 10.11702 10.46781 11.46526 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011917 B = 0.002364 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.985170 B =11841.327491 C =13406.423798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.161 3.839 11 C -0.103 4.103 12 H 0.081 0.919 13 C -0.110 4.110 14 C -0.123 4.123 15 C -0.132 4.132 16 C 0.147 3.853 17 H 0.097 0.903 18 N -0.709 5.709 19 C 0.567 3.433 20 O -0.535 6.535 21 C -0.176 4.176 22 C 0.161 3.839 23 N -0.458 5.458 24 C 0.144 3.856 25 C -0.118 4.118 26 C -0.166 4.166 27 S 0.124 5.876 28 C -0.212 4.212 29 C 0.030 3.970 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.401 0.599 41 H 0.169 0.831 42 H 0.156 0.844 43 H 0.179 0.821 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 -24.099 -10.552 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.033 3.967 11 C -0.122 4.122 12 H 0.099 0.901 13 C -0.148 4.148 14 C -0.161 4.161 15 C -0.171 4.171 16 C 0.042 3.958 17 H 0.115 0.885 18 N -0.360 5.360 19 C 0.352 3.648 20 O -0.413 6.413 21 C -0.185 4.185 22 C -0.012 4.012 23 N -0.166 5.166 24 C 0.011 3.989 25 C -0.149 4.149 26 C -0.303 4.303 27 S 0.387 5.613 28 C -0.329 4.329 29 C 0.000 4.000 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.237 0.763 41 H 0.186 0.814 42 H 0.173 0.827 43 H 0.196 0.804 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.815 -24.944 -10.053 28.006 hybrid contribution -0.675 1.740 -0.375 1.904 sum 7.140 -23.204 -10.428 26.422 Atomic orbital electron populations 1.69644 1.05070 1.25735 1.57822 1.24721 0.95520 0.97635 1.03061 0.86276 0.78534 0.83577 0.77862 1.21302 1.21693 1.21284 1.19180 0.90986 0.84202 1.42648 0.91341 1.42308 1.05819 0.99823 1.89496 1.20638 0.92904 0.85200 0.97913 1.22570 0.97560 0.93014 0.99041 0.90073 1.22269 1.00294 0.95317 0.96953 1.22125 0.98654 0.95664 0.99663 1.22513 0.96929 0.98063 0.99573 1.21993 0.98322 0.93674 0.81765 0.88478 1.45972 1.36239 1.43870 1.09872 1.17786 0.80000 0.79419 0.87567 1.90794 1.52496 1.54763 1.43208 1.20935 1.00405 1.01884 0.95256 1.22918 0.96528 0.95439 0.86265 1.67592 1.14173 1.11940 1.22918 1.19279 0.92995 0.94181 0.92491 1.19677 0.98621 0.99219 0.97372 1.25451 1.01158 1.02463 1.01215 1.84371 1.35595 1.43516 0.97815 1.23560 1.04685 1.06302 0.98348 1.20984 0.92924 0.91767 0.94316 0.93493 0.78232 0.96188 0.96449 0.90660 0.91086 0.91884 0.91921 0.91482 0.91668 0.76304 0.81441 0.82656 0.80385 0.82902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.03 5.45 -59.91 -0.33 -18.36 16 10 C 0.16 3.15 5.71 -4.04 -0.02 3.13 16 11 C -0.10 -1.54 2.54 -88.61 -0.23 -1.76 16 12 H 0.08 1.19 8.02 -51.93 -0.42 0.77 16 13 C -0.11 -1.60 5.96 -25.08 -0.15 -1.75 16 14 C -0.12 -1.44 6.80 -25.61 -0.17 -1.62 16 15 C -0.13 -1.55 6.53 -25.61 -0.17 -1.72 16 16 C 0.15 1.94 2.61 -66.26 -0.17 1.77 16 17 H 0.10 1.45 7.58 -51.93 -0.39 1.06 16 18 N -0.71 -8.34 5.07 -53.21 -0.27 -8.61 16 19 C 0.57 7.34 7.77 -12.46 -0.10 7.24 16 20 O -0.53 -8.54 16.12 5.28 0.09 -8.46 16 21 C -0.18 -2.00 5.89 -104.87 -0.62 -2.62 16 22 C 0.16 1.70 10.69 -17.36 -0.19 1.51 16 23 N -0.46 -5.37 10.39 -11.01 -0.11 -5.48 16 24 C 0.14 1.56 6.97 -84.92 -0.59 0.97 16 25 C -0.12 -0.95 10.16 -40.61 -0.41 -1.36 16 26 C -0.17 -1.01 11.08 28.81 0.32 -0.69 16 27 S 0.12 0.91 23.29 -107.50 -2.50 -1.59 16 28 C -0.21 -2.16 6.49 -38.47 -0.25 -2.41 16 29 C 0.03 0.33 9.73 -38.65 -0.38 -0.05 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 31 H 0.38 9.86 7.53 -40.82 -0.31 9.56 16 32 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.10 8.02 -51.93 -0.42 0.68 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.71 8.04 -51.93 -0.42 0.30 16 40 H 0.40 3.88 6.59 -40.82 -0.27 3.61 16 41 H 0.17 1.34 6.41 -52.49 -0.34 1.01 16 42 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.15 1.55 7.72 -52.49 -0.41 1.14 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -33.40 379.64 -10.96 -44.36 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.89 Total: 8.89 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -3.37 Total: -6.67 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.01 Total: -59.69 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.40 -10.96 -44.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496896684.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.808 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds