Wall clock time and date at job start Wed Apr 1 2020 02:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00290 * 2 1 4 4 H 1.48493 * 109.47182 * 239.99931 * 3 2 1 5 5 H 1.48499 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46979 * 119.99616 * 3 2 1 7 7 C 1.38812 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00364 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99674 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99467 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46814 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.67189 * 56.78200 * 11 10 9 13 13 C 1.54888 * 110.75784 * 293.54612 * 11 10 9 14 14 C 1.54261 * 104.19672 * 203.55965 * 13 11 10 15 15 C 1.53876 * 106.59990 * 23.60631 * 14 13 11 16 16 C 1.54267 * 106.59870 * 0.02562 * 15 14 13 17 17 H 1.09004 * 110.48597 * 95.06674 * 16 15 14 18 18 N 1.46497 * 110.48629 * 217.71063 * 16 15 14 19 19 C 1.34780 * 120.00146 * 273.54328 * 18 16 15 20 20 O 1.21594 * 119.99547 * 359.97438 * 19 18 16 21 21 C 1.47560 * 120.00189 * 180.02562 * 19 18 16 22 22 C 1.40124 * 120.58596 * 359.72361 * 21 19 18 23 23 N 1.30610 * 121.16486 * 179.71753 * 22 21 19 24 24 C 1.34905 * 122.45122 * 0.55436 * 23 22 21 25 25 C 1.40618 * 128.46071 * 179.71567 * 24 23 22 26 26 C 1.32281 * 115.91223 * 180.02562 * 25 24 23 27 27 S 1.75509 * 110.83600 * 0.02562 * 26 25 24 28 28 C 1.40095 * 119.27087 * 359.74071 * 24 23 22 29 29 C 1.39364 * 119.75336 * 359.97438 * 28 24 23 30 30 H 0.97006 * 120.00055 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00345 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47354 * 59.99744 * 10 9 7 33 33 H 1.08999 * 109.47197 * 299.99913 * 10 9 7 34 34 H 1.09000 * 110.48622 * 84.87747 * 13 11 10 35 35 H 1.09001 * 110.59737 * 322.29391 * 13 11 10 36 36 H 1.08998 * 110.03492 * 264.32506 * 14 13 11 37 37 H 1.08994 * 110.03470 * 142.89082 * 14 13 11 38 38 H 1.08995 * 110.03160 * 119.28453 * 15 14 13 39 39 H 1.08998 * 110.03319 * 240.71542 * 15 14 13 40 40 H 0.96998 * 120.00123 * 93.54999 * 18 16 15 41 41 H 1.07991 * 119.41268 * 359.97438 * 22 21 19 42 42 H 1.07998 * 122.04418 * 0.02562 * 25 24 23 43 43 H 1.07998 * 124.58218 * 180.02562 * 26 25 24 44 44 H 1.07994 * 120.73629 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0027 11 6 1.0636 -4.8197 0.0031 12 1 0.3892 -4.7497 -0.8504 13 6 0.2666 -4.8600 1.3306 14 6 -0.1970 -6.3266 1.4491 15 6 0.7805 -7.1660 0.6078 16 6 1.8044 -6.1803 0.0079 17 1 2.6954 -6.1280 0.6336 18 7 2.1577 -6.5759 -1.3577 19 6 3.1469 -7.4672 -1.5665 20 8 3.7464 -7.9425 -0.6214 21 6 3.5032 -7.8653 -2.9420 22 6 2.8173 -7.3289 -4.0398 23 7 3.1268 -7.6691 -5.2622 24 6 4.1055 -8.5547 -5.5413 25 6 4.5377 -9.0132 -6.7984 26 6 5.5269 -9.8914 -6.7846 27 16 6.0287 -10.2407 -5.1394 28 6 4.8266 -9.1330 -4.4885 29 6 4.5258 -8.7876 -3.1723 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0023 32 1 2.6846 -3.7138 0.8927 33 1 2.6846 -3.7154 -0.8872 34 1 -0.5925 -4.1912 1.2802 35 1 0.9076 -4.5935 2.1710 36 1 -1.2096 -6.4307 1.0594 37 1 -0.1626 -6.6460 2.4906 38 1 1.2892 -7.8927 1.2411 39 1 0.2422 -7.6774 -0.1902 40 1 1.6798 -6.1964 -2.1116 41 1 2.0214 -6.6184 -3.8723 42 1 4.0895 -8.6694 -7.7188 43 1 5.9664 -10.3336 -7.6664 44 1 5.0713 -9.2240 -2.3487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496896684.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:12 Heat of formation + Delta-G solvation = 3.107581 kcal Electronic energy + Delta-G solvation = -26636.580564 eV Core-core repulsion = 22872.099794 eV Total energy + Delta-G solvation = -3764.480770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.90035 -40.73418 -39.14837 -36.75175 -36.31213 -34.86312 -33.69524 -33.29774 -31.22486 -30.17982 -28.59799 -26.45815 -25.96943 -24.86673 -23.92049 -22.92819 -21.78831 -21.48567 -20.80787 -19.64044 -19.09832 -18.25835 -17.79021 -17.41055 -17.09659 -16.63602 -16.31113 -15.97405 -15.82383 -15.34896 -15.15770 -15.08109 -15.04059 -14.75237 -14.45248 -14.24067 -14.03099 -13.64618 -13.54170 -13.13444 -13.10053 -12.83126 -12.76505 -12.41678 -12.18999 -12.12466 -12.03845 -11.87652 -11.63703 -11.60402 -11.57864 -11.36015 -11.27742 -10.91726 -10.59571 -10.19987 -9.84158 -9.08665 -8.98507 -7.94715 -5.22731 -0.98249 -0.14037 0.27820 0.79445 0.82219 1.47189 1.49535 1.55746 1.80356 1.99934 2.55867 2.63954 2.93741 3.38004 3.41090 3.47461 3.55089 3.63501 3.67287 3.90965 3.92021 4.03288 4.19258 4.36858 4.43104 4.48429 4.53194 4.57967 4.63739 4.67569 4.71369 4.74790 4.89580 4.97473 5.03148 5.05413 5.12858 5.19889 5.25728 5.26529 5.32845 5.47849 5.52217 5.56692 6.27749 6.40236 6.60024 7.05524 7.34930 8.10280 8.35418 9.28224 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011917 B = 0.002364 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.985170 B =11841.327491 C =13406.423798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.162 3.838 11 C -0.092 4.092 12 H 0.090 0.910 13 C -0.111 4.111 14 C -0.112 4.112 15 C -0.124 4.124 16 C 0.155 3.845 17 H 0.078 0.922 18 N -0.702 5.702 19 C 0.571 3.429 20 O -0.570 6.570 21 C -0.191 4.191 22 C 0.162 3.838 23 N -0.481 5.481 24 C 0.132 3.868 25 C -0.143 4.143 26 C -0.139 4.139 27 S 0.148 5.852 28 C -0.234 4.234 29 C 0.027 3.973 30 H 0.252 0.748 31 H 0.377 0.623 32 H 0.011 0.989 33 H 0.016 0.984 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.412 0.588 41 H 0.187 0.813 42 H 0.170 0.830 43 H 0.218 0.782 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.248 -25.548 -12.069 29.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.035 3.965 11 C -0.111 4.111 12 H 0.108 0.892 13 C -0.149 4.149 14 C -0.150 4.150 15 C -0.162 4.162 16 C 0.049 3.951 17 H 0.096 0.904 18 N -0.352 5.352 19 C 0.358 3.642 20 O -0.451 6.451 21 C -0.200 4.200 22 C -0.011 4.011 23 N -0.189 5.189 24 C -0.002 4.002 25 C -0.173 4.173 26 C -0.276 4.276 27 S 0.411 5.589 28 C -0.351 4.351 29 C -0.003 4.003 30 H 0.061 0.939 31 H 0.210 0.790 32 H 0.029 0.971 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.250 0.750 41 H 0.204 0.796 42 H 0.188 0.812 43 H 0.235 0.765 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.532 -26.417 -11.585 30.081 hybrid contribution -0.768 2.088 0.026 2.225 sum 7.764 -24.329 -11.559 28.032 Atomic orbital electron populations 1.69788 1.06382 1.26141 1.59285 1.25496 0.96401 1.00833 1.03639 0.85271 0.77293 0.79473 0.78081 1.20532 1.21916 1.20643 1.19543 0.91303 0.85569 1.41510 0.91273 1.42458 1.05654 1.00764 1.89307 1.20736 0.93633 0.84974 0.97125 1.22413 0.96774 0.92076 0.99822 0.89193 1.22220 0.99383 0.97262 0.96021 1.22061 0.99222 0.93150 1.00576 1.22449 0.96388 0.97527 0.99870 1.21785 0.97818 0.93082 0.82372 0.90381 1.45872 1.36076 1.43530 1.09752 1.17971 0.79476 0.78924 0.87854 1.90770 1.53745 1.56173 1.44372 1.20774 1.01584 1.03180 0.94424 1.23180 0.96658 0.95386 0.85830 1.67624 1.15150 1.12934 1.23224 1.19796 0.92726 0.93881 0.93808 1.19873 0.99940 1.00552 0.96935 1.25955 0.99397 1.00480 1.01721 1.84337 1.34092 1.42031 0.98419 1.23774 1.05935 1.07442 0.97997 1.21094 0.92722 0.91535 0.94913 0.93932 0.79045 0.97062 0.96616 0.92076 0.92502 0.90383 0.90779 0.91463 0.90248 0.74983 0.79590 0.81230 0.76539 0.82864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.49 13.06 21.65 0.28 -58.20 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 3 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 9 N -0.74 -37.03 5.45 -343.44 -1.87 -38.90 16 10 C 0.16 6.42 5.71 86.38 0.49 6.91 16 11 C -0.09 -2.72 2.54 -9.49 -0.02 -2.75 16 12 H 0.09 2.55 8.02 -2.38 -0.02 2.53 16 13 C -0.11 -3.20 5.96 31.67 0.19 -3.01 16 14 C -0.11 -2.44 6.80 31.32 0.21 -2.23 16 15 C -0.12 -2.72 6.53 31.32 0.20 -2.51 16 16 C 0.15 4.01 2.61 46.08 0.12 4.13 16 17 H 0.08 2.37 7.58 -2.38 -0.02 2.35 16 18 N -0.70 -16.16 5.07 -440.53 -2.23 -18.40 16 19 C 0.57 14.83 7.77 86.70 0.67 15.51 16 20 O -0.57 -18.52 16.12 -4.01 -0.06 -18.58 16 21 C -0.19 -4.35 5.89 -20.03 -0.12 -4.47 16 22 C 0.16 3.37 10.69 85.33 0.91 4.28 16 23 N -0.48 -11.06 10.39 -188.74 -1.96 -13.02 16 24 C 0.13 2.73 6.97 39.70 0.28 3.01 16 25 C -0.14 -2.02 10.16 21.79 0.22 -1.80 16 26 C -0.14 -1.26 11.08 66.76 0.74 -0.52 16 27 S 0.15 1.89 23.29 -56.49 -1.32 0.57 16 28 C -0.23 -4.63 6.49 22.99 0.15 -4.48 16 29 C 0.03 0.60 9.73 22.88 0.22 0.82 16 30 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 31 H 0.38 19.75 7.53 -92.71 -0.70 19.05 16 32 H 0.01 0.48 8.10 -2.39 -0.02 0.46 16 33 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 1.78 8.02 -2.39 -0.02 1.77 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.55 8.04 -2.39 -0.02 1.53 16 40 H 0.41 7.61 6.59 -92.71 -0.61 7.00 16 41 H 0.19 2.85 6.41 -2.92 -0.02 2.83 16 42 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 43 H 0.22 0.20 8.06 -2.91 -0.02 0.18 16 44 H 0.15 3.20 7.72 -2.91 -0.02 3.17 16 Total: -1.00 -72.45 379.64 0.18 -72.27 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: -0.26 Total: 29.70 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 5.58 Total: -3.79 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -5.78 Total: -128.52 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.06 Total: -18.58 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.32 Total: 0.57 kcal Total: -72.45 0.18 -72.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496896684.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.378 kcal (2) G-P(sol) polarization free energy of solvation -72.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds