Wall clock time and date at job start Wed Apr 1 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99993 * 2 1 4 4 H 1.48502 * 109.47286 * 272.02983 * 3 2 1 5 5 H 1.48506 * 109.47120 * 32.02888 * 3 2 1 6 6 H 1.48504 * 109.47083 * 152.02482 * 3 2 1 7 7 C 1.38806 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99801 * 336.83850 * 7 2 1 9 9 N 1.36939 * 120.00656 * 156.83814 * 7 2 1 10 10 C 1.46500 * 119.99569 * 320.87689 * 9 7 2 11 11 C 1.53006 * 109.47102 * 269.99860 * 10 9 7 12 12 C 1.53001 * 109.46744 * 180.02562 * 11 10 9 13 13 N 1.46506 * 109.46583 * 179.97438 * 12 11 10 14 14 C 1.34771 * 119.99658 * 180.02562 * 13 12 11 15 15 O 1.21598 * 120.00370 * 359.97438 * 14 13 12 16 16 C 1.47567 * 120.00196 * 179.97438 * 14 13 12 17 17 C 1.40120 * 120.58627 * 359.97438 * 16 14 13 18 18 N 1.30612 * 121.17681 * 179.97438 * 17 16 14 19 19 C 1.34909 * 122.44028 * 359.97438 * 18 17 16 20 20 C 1.40619 * 128.45539 * 179.97438 * 19 18 17 21 21 C 1.32283 * 115.90791 * 180.02562 * 20 19 18 22 22 S 1.75510 * 110.83859 * 0.02562 * 21 20 19 23 23 C 1.40089 * 119.27680 * 0.02562 * 19 18 17 24 24 C 1.39366 * 119.74996 * 359.96564 * 23 19 18 25 25 C 1.46493 * 120.00378 * 140.87306 * 9 7 2 26 26 C 1.53001 * 117.50026 * 4.01338 * 25 9 7 27 27 C 1.53002 * 60.00111 * 252.50720 * 26 25 9 28 28 H 0.97001 * 120.00409 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47285 * 149.99473 * 10 9 7 30 30 H 1.08997 * 109.47140 * 29.99738 * 10 9 7 31 31 H 1.08993 * 109.46882 * 60.00114 * 11 10 9 32 32 H 1.08997 * 109.47024 * 299.99950 * 11 10 9 33 33 H 1.09000 * 109.47129 * 60.00526 * 12 11 10 34 34 H 1.08997 * 109.47233 * 299.99716 * 12 11 10 35 35 H 0.96998 * 120.00278 * 359.97438 * 13 12 11 36 36 H 1.07999 * 119.41240 * 0.24396 * 17 16 14 37 37 H 1.07998 * 122.04433 * 0.02562 * 20 19 18 38 38 H 1.08008 * 124.58100 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.73148 * 180.02562 * 24 23 19 40 40 H 1.08997 * 115.54995 * 149.71488 * 25 9 7 41 41 H 1.09004 * 117.49786 * 359.97438 * 26 25 9 42 42 H 1.08996 * 117.50226 * 145.01775 * 26 25 9 43 43 H 1.08996 * 117.49707 * 252.51318 * 27 26 25 44 44 H 1.09001 * 117.51908 * 107.47645 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4547 2.0712 -1.3992 5 1 1.4697 2.6399 0.7426 6 1 3.5685 1.4282 0.6568 7 6 2.0102 -1.2021 -0.0005 8 1 1.5355 -2.0999 0.3670 9 7 3.2969 -1.2497 -0.4670 10 6 3.6780 -0.4678 -1.6458 11 6 3.4612 -1.3072 -2.9065 12 6 3.8599 -0.4908 -4.1375 13 7 3.6529 -1.2948 -5.3446 14 6 3.9391 -0.7777 -6.5559 15 8 4.3686 0.3562 -6.6469 16 6 3.7312 -1.5876 -7.7718 17 6 3.2373 -2.8958 -7.6813 18 7 3.0485 -3.6227 -8.7499 19 6 3.3127 -3.1662 -9.9916 20 6 3.1587 -3.8335 -11.2198 21 6 3.4970 -3.1454 -12.2977 22 16 4.0609 -1.5412 -11.8630 23 6 3.8089 -1.8661 -10.1524 24 6 4.0218 -1.0637 -9.0329 25 6 4.2921 -2.0825 0.2127 26 6 3.8114 -2.9473 1.3798 27 6 4.6661 -1.7069 1.6480 28 1 -0.4851 0.8400 -0.0004 29 1 4.7288 -0.1878 -1.5719 30 1 3.0652 0.4320 -1.6986 31 1 2.4104 -1.5871 -2.9804 32 1 4.0741 -2.2071 -2.8537 33 1 4.9109 -0.2113 -4.0634 34 1 3.2474 0.4093 -4.1905 35 1 3.3106 -2.1994 -5.2721 36 1 3.0047 -3.3089 -6.7109 37 1 2.7869 -4.8457 -11.2793 38 1 3.4354 -3.5205 -13.3087 39 1 4.4034 -0.0589 -9.1385 40 1 5.0795 -2.4873 -0.4230 41 1 2.7546 -2.8962 1.6421 42 1 4.2824 -3.9213 1.5120 43 1 5.6994 -1.8650 1.9566 44 1 4.1718 -0.8399 2.0864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566594184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:27 Heat of formation + Delta-G solvation = 74.934168 kcal Electronic energy + Delta-G solvation = -26210.606432 eV Core-core repulsion = 22449.240297 eV Total energy + Delta-G solvation = -3761.366136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.03434 -39.40073 -37.42301 -36.08522 -35.55012 -33.72566 -32.89834 -32.00001 -30.70438 -29.46631 -25.98173 -24.99746 -24.16671 -23.53160 -22.04689 -21.69379 -21.25630 -20.66660 -19.65250 -18.77863 -17.42647 -17.03269 -16.61279 -16.44012 -15.84528 -15.60513 -15.37159 -15.25462 -14.81258 -14.53157 -14.24833 -13.94693 -13.65480 -13.51414 -13.28656 -13.01962 -12.74937 -12.48352 -12.27284 -12.14220 -12.08754 -11.56497 -11.22127 -11.11790 -10.88127 -10.86315 -10.68056 -10.45987 -10.33131 -9.99159 -9.79159 -9.72609 -9.49417 -9.44392 -9.27247 -9.00887 -8.53944 -8.47737 -6.77185 -6.08322 -3.51213 -0.24808 0.62325 0.89843 1.36991 1.48666 2.71406 3.01616 3.26601 3.43713 3.46523 3.49650 3.60221 4.17219 4.33820 4.42832 4.45472 4.59697 4.68533 4.70673 4.83820 5.00189 5.21654 5.24058 5.37378 5.42365 5.47247 5.54812 5.64840 5.75007 5.76206 5.94533 5.97594 5.98120 6.05435 6.11702 6.28874 6.40218 6.45789 6.47508 6.69983 6.84887 6.90620 7.09034 7.33767 7.40273 7.98656 8.05707 8.33974 8.92179 9.62933 10.03406 11.06324 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.018788 B = 0.002006 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.950698 B =13955.109504 C =14405.726553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.041 3.959 3 Si 0.871 3.129 4 H -0.282 1.282 5 H -0.301 1.301 6 H -0.267 1.267 7 C -0.272 4.272 8 H 0.082 0.918 9 N -0.572 5.572 10 C 0.142 3.858 11 C -0.146 4.146 12 C 0.118 3.882 13 N -0.715 5.715 14 C 0.562 3.438 15 O -0.536 6.536 16 C -0.175 4.175 17 C 0.160 3.840 18 N -0.459 5.459 19 C 0.144 3.856 20 C -0.119 4.119 21 C -0.166 4.166 22 S 0.124 5.876 23 C -0.212 4.212 24 C 0.030 3.970 25 C 0.119 3.881 26 C -0.189 4.189 27 C -0.225 4.225 28 H 0.265 0.735 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.401 0.599 36 H 0.169 0.831 37 H 0.156 0.844 38 H 0.179 0.821 39 H 0.153 0.847 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.071 -6.904 -22.697 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.160 4.160 3 Si 0.700 3.300 4 H -0.209 1.209 5 H -0.228 1.228 6 H -0.191 1.191 7 C -0.400 4.400 8 H 0.100 0.900 9 N -0.290 5.290 10 C 0.016 3.984 11 C -0.187 4.187 12 C -0.006 4.006 13 N -0.366 5.366 14 C 0.347 3.653 15 O -0.414 6.414 16 C -0.184 4.184 17 C -0.012 4.012 18 N -0.167 5.167 19 C 0.010 3.990 20 C -0.149 4.149 21 C -0.303 4.303 22 S 0.388 5.612 23 C -0.329 4.329 24 C 0.000 4.000 25 C 0.011 3.989 26 C -0.227 4.227 27 C -0.266 4.266 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.236 0.764 36 H 0.186 0.814 37 H 0.173 0.827 38 H 0.196 0.804 39 H 0.171 0.829 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.380 -5.632 -23.624 26.035 hybrid contribution -0.044 0.181 0.903 0.922 sum 9.336 -5.451 -22.721 25.162 Atomic orbital electron populations 1.69863 1.06034 1.26938 1.50546 1.25511 0.95052 0.97779 0.97685 0.87070 0.80803 0.84671 0.77416 1.20949 1.22842 1.19117 1.18699 0.86301 0.94457 1.40564 0.90029 1.43658 1.07031 1.51998 1.26353 1.21087 0.97975 0.94098 0.85261 1.22406 1.03056 0.99383 0.93833 1.21553 1.01455 0.94825 0.82742 1.46013 1.66046 1.18545 1.06014 1.17817 0.78282 0.86228 0.82941 1.90804 1.45478 1.18396 1.86742 1.20948 1.06184 0.96853 0.94390 1.22919 0.91798 0.89227 0.97305 1.67598 1.15805 1.36181 0.97088 1.19277 0.96812 0.90123 0.92814 1.19672 1.03844 1.02340 0.89043 1.25457 1.04112 0.97505 1.03232 1.84385 1.67677 1.13629 0.95525 1.23561 1.10110 0.99825 0.99380 1.20995 0.91185 0.99129 0.88737 1.21174 0.93959 0.97220 0.86550 1.23059 1.01095 0.93433 1.05092 1.23376 0.98346 0.99606 1.05224 0.92553 0.93803 0.92186 0.90304 0.91983 0.91458 0.91171 0.76378 0.81404 0.82660 0.80376 0.82892 0.89085 0.87921 0.90513 0.90851 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.97 55.49 0.78 -25.52 16 2 C 0.04 1.14 5.28 -17.43 -0.09 1.05 16 3 Si 0.87 21.52 25.31 -169.99 -4.30 17.22 16 4 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.27 -7.14 8.93 -15.06 -0.13 -7.27 16 8 H 0.08 2.33 6.86 -52.48 -0.36 1.97 16 9 N -0.57 -12.69 2.38 -165.66 -0.39 -13.08 16 10 C 0.14 2.81 4.56 -4.04 -0.02 2.79 16 11 C -0.15 -2.37 5.65 -26.73 -0.15 -2.52 16 12 C 0.12 1.73 5.67 -4.04 -0.02 1.71 16 13 N -0.72 -8.93 5.51 -61.33 -0.34 -9.27 16 14 C 0.56 7.67 7.77 -12.46 -0.10 7.58 16 15 O -0.54 -9.15 16.41 5.28 0.09 -9.06 16 16 C -0.18 -2.02 5.89 -104.87 -0.62 -2.64 16 17 C 0.16 1.66 10.69 -17.36 -0.19 1.47 16 18 N -0.46 -5.25 10.39 -11.01 -0.11 -5.36 16 19 C 0.14 1.52 6.96 -84.92 -0.59 0.93 16 20 C -0.12 -0.93 10.16 -40.61 -0.41 -1.34 16 21 C -0.17 -0.99 11.08 28.81 0.32 -0.67 16 22 S 0.12 0.91 23.29 -107.50 -2.50 -1.59 16 23 C -0.21 -2.15 6.49 -38.47 -0.25 -2.40 16 24 C 0.03 0.33 9.73 -38.65 -0.38 -0.05 16 25 C 0.12 2.30 6.57 -67.93 -0.45 1.85 16 26 C -0.19 -3.49 9.80 -26.73 -0.26 -3.75 16 27 C -0.22 -4.20 10.35 -26.73 -0.28 -4.47 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 29 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.06 1.33 3.45 -51.93 -0.18 1.15 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.40 3.93 6.53 -40.82 -0.27 3.66 16 36 H 0.17 1.28 6.41 -52.49 -0.34 0.95 16 37 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.18 0.47 8.06 -52.48 -0.42 0.05 16 39 H 0.15 1.59 7.72 -52.48 -0.41 1.19 16 40 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 41 H 0.10 2.15 6.44 -51.93 -0.33 1.82 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -32.40 378.62 -10.40 -42.80 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.70 Total: 5.88 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -3.61 Total: -7.73 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.07 Total: -53.23 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.30 Total: 17.22 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.40 -10.40 -42.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566594184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.732 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds