Wall clock time and date at job start Wed Apr 1 2020 02:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99993 * 2 1 4 4 H 1.48502 * 109.47286 * 272.02983 * 3 2 1 5 5 H 1.48506 * 109.47120 * 32.02888 * 3 2 1 6 6 H 1.48504 * 109.47083 * 152.02482 * 3 2 1 7 7 C 1.38806 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99801 * 336.83850 * 7 2 1 9 9 N 1.36939 * 120.00656 * 156.83814 * 7 2 1 10 10 C 1.46500 * 119.99569 * 320.87689 * 9 7 2 11 11 C 1.53006 * 109.47102 * 269.99860 * 10 9 7 12 12 C 1.53001 * 109.46744 * 180.02562 * 11 10 9 13 13 N 1.46506 * 109.46583 * 179.97438 * 12 11 10 14 14 C 1.34771 * 119.99658 * 180.02562 * 13 12 11 15 15 O 1.21598 * 120.00370 * 359.97438 * 14 13 12 16 16 C 1.47567 * 120.00196 * 179.97438 * 14 13 12 17 17 C 1.40120 * 120.58627 * 359.97438 * 16 14 13 18 18 N 1.30612 * 121.17681 * 179.97438 * 17 16 14 19 19 C 1.34909 * 122.44028 * 359.97438 * 18 17 16 20 20 C 1.40619 * 128.45539 * 179.97438 * 19 18 17 21 21 C 1.32283 * 115.90791 * 180.02562 * 20 19 18 22 22 S 1.75510 * 110.83859 * 0.02562 * 21 20 19 23 23 C 1.40089 * 119.27680 * 0.02562 * 19 18 17 24 24 C 1.39366 * 119.74996 * 359.96564 * 23 19 18 25 25 C 1.46493 * 120.00378 * 140.87306 * 9 7 2 26 26 C 1.53001 * 117.50026 * 4.01338 * 25 9 7 27 27 C 1.53002 * 60.00111 * 252.50720 * 26 25 9 28 28 H 0.97001 * 120.00409 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47285 * 149.99473 * 10 9 7 30 30 H 1.08997 * 109.47140 * 29.99738 * 10 9 7 31 31 H 1.08993 * 109.46882 * 60.00114 * 11 10 9 32 32 H 1.08997 * 109.47024 * 299.99950 * 11 10 9 33 33 H 1.09000 * 109.47129 * 60.00526 * 12 11 10 34 34 H 1.08997 * 109.47233 * 299.99716 * 12 11 10 35 35 H 0.96998 * 120.00278 * 359.97438 * 13 12 11 36 36 H 1.07999 * 119.41240 * 0.24396 * 17 16 14 37 37 H 1.07998 * 122.04433 * 0.02562 * 20 19 18 38 38 H 1.08008 * 124.58100 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.73148 * 180.02562 * 24 23 19 40 40 H 1.08997 * 115.54995 * 149.71488 * 25 9 7 41 41 H 1.09004 * 117.49786 * 359.97438 * 26 25 9 42 42 H 1.08996 * 117.50226 * 145.01775 * 26 25 9 43 43 H 1.08996 * 117.49707 * 252.51318 * 27 26 25 44 44 H 1.09001 * 117.51908 * 107.47645 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4547 2.0712 -1.3992 5 1 1.4697 2.6399 0.7426 6 1 3.5685 1.4282 0.6568 7 6 2.0102 -1.2021 -0.0005 8 1 1.5355 -2.0999 0.3670 9 7 3.2969 -1.2497 -0.4670 10 6 3.6780 -0.4678 -1.6458 11 6 3.4612 -1.3072 -2.9065 12 6 3.8599 -0.4908 -4.1375 13 7 3.6529 -1.2948 -5.3446 14 6 3.9391 -0.7777 -6.5559 15 8 4.3686 0.3562 -6.6469 16 6 3.7312 -1.5876 -7.7718 17 6 3.2373 -2.8958 -7.6813 18 7 3.0485 -3.6227 -8.7499 19 6 3.3127 -3.1662 -9.9916 20 6 3.1587 -3.8335 -11.2198 21 6 3.4970 -3.1454 -12.2977 22 16 4.0609 -1.5412 -11.8630 23 6 3.8089 -1.8661 -10.1524 24 6 4.0218 -1.0637 -9.0329 25 6 4.2921 -2.0825 0.2127 26 6 3.8114 -2.9473 1.3798 27 6 4.6661 -1.7069 1.6480 28 1 -0.4851 0.8400 -0.0004 29 1 4.7288 -0.1878 -1.5719 30 1 3.0652 0.4320 -1.6986 31 1 2.4104 -1.5871 -2.9804 32 1 4.0741 -2.2071 -2.8537 33 1 4.9109 -0.2113 -4.0634 34 1 3.2474 0.4093 -4.1905 35 1 3.3106 -2.1994 -5.2721 36 1 3.0047 -3.3089 -6.7109 37 1 2.7869 -4.8457 -11.2793 38 1 3.4354 -3.5205 -13.3087 39 1 4.4034 -0.0589 -9.1385 40 1 5.0795 -2.4873 -0.4230 41 1 2.7546 -2.8962 1.6421 42 1 4.2824 -3.9213 1.5120 43 1 5.6994 -1.8650 1.9566 44 1 4.1718 -0.8399 2.0864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566594184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:26 Heat of formation + Delta-G solvation = 54.294217 kcal Electronic energy + Delta-G solvation = -26211.501448 eV Core-core repulsion = 22449.240297 eV Total energy + Delta-G solvation = -3762.261151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.86007 -40.41169 -39.03586 -36.82329 -36.75710 -35.29286 -33.81002 -33.69111 -31.93216 -30.61448 -27.30849 -26.16804 -25.41333 -24.64357 -23.17226 -22.79131 -22.63776 -21.59110 -21.35926 -19.65203 -18.47372 -18.15999 -17.82648 -17.38953 -17.24685 -17.02204 -16.67806 -16.55348 -15.81818 -15.46351 -15.31584 -15.11231 -15.03169 -14.54349 -14.36722 -14.13868 -14.06166 -13.89643 -13.75677 -13.64432 -12.85186 -12.74414 -12.65232 -12.52838 -12.38622 -12.13046 -12.05626 -11.78847 -11.64974 -11.49446 -11.42331 -11.22232 -10.93621 -10.61666 -10.57820 -10.27264 -9.85420 -9.09480 -8.59871 -8.21387 -5.58742 -0.99383 -0.15153 0.27056 0.79310 0.81380 1.28378 1.40026 1.49795 1.78428 1.97507 2.39894 2.62792 2.93074 2.99578 3.20869 3.37560 3.45161 3.51150 3.63496 3.90030 3.99253 4.09319 4.17998 4.32420 4.36457 4.39821 4.43726 4.52839 4.59475 4.62680 4.70841 4.76579 4.86291 4.89509 4.97208 5.02969 5.05770 5.22832 5.26110 5.29504 5.35374 5.45781 5.56646 5.96042 6.22878 6.38022 6.58725 7.01125 7.03185 7.64917 8.05692 8.97654 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.018788 B = 0.002006 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.950698 B =13955.109504 C =14405.726553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.013 4.013 3 Si 0.927 3.073 4 H -0.270 1.270 5 H -0.314 1.314 6 H -0.261 1.261 7 C -0.246 4.246 8 H 0.048 0.952 9 N -0.585 5.585 10 C 0.134 3.866 11 C -0.128 4.128 12 C 0.127 3.873 13 N -0.705 5.705 14 C 0.566 3.434 15 O -0.576 6.576 16 C -0.191 4.191 17 C 0.163 3.837 18 N -0.479 5.479 19 C 0.133 3.867 20 C -0.142 4.142 21 C -0.138 4.138 22 S 0.146 5.854 23 C -0.235 4.235 24 C 0.026 3.974 25 C 0.107 3.893 26 C -0.187 4.187 27 C -0.219 4.219 28 H 0.261 0.739 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.415 0.585 36 H 0.191 0.809 37 H 0.172 0.828 38 H 0.218 0.782 39 H 0.152 0.848 40 H 0.131 0.869 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.553 -8.379 -24.926 28.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.210 4.210 3 Si 0.757 3.243 4 H -0.197 1.197 5 H -0.243 1.243 6 H -0.185 1.185 7 C -0.376 4.376 8 H 0.066 0.934 9 N -0.305 5.305 10 C 0.008 3.992 11 C -0.168 4.168 12 C 0.003 3.997 13 N -0.357 5.357 14 C 0.353 3.647 15 O -0.457 6.457 16 C -0.199 4.199 17 C -0.009 4.009 18 N -0.188 5.188 19 C -0.001 4.001 20 C -0.172 4.172 21 C -0.275 4.275 22 S 0.409 5.591 23 C -0.352 4.352 24 C -0.003 4.003 25 C 0.000 4.000 26 C -0.225 4.225 27 C -0.259 4.259 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.253 0.747 36 H 0.207 0.793 37 H 0.189 0.811 38 H 0.235 0.765 39 H 0.169 0.831 40 H 0.148 0.852 41 H 0.085 0.915 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.902 -7.141 -25.865 29.354 hybrid contribution -0.775 0.519 1.478 1.747 sum 11.126 -6.623 -24.387 27.611 Atomic orbital electron populations 1.69978 1.07543 1.27263 1.53940 1.26026 0.95489 1.00636 0.98865 0.86139 0.79406 0.81065 0.77707 1.19745 1.24280 1.18506 1.18537 0.87936 0.92929 1.38207 0.93393 1.43770 1.06293 1.52708 1.27693 1.21182 0.98812 0.93391 0.85780 1.22117 1.02120 0.99758 0.92780 1.21302 1.01476 0.93989 0.82939 1.45830 1.65702 1.18980 1.05184 1.18066 0.77294 0.85789 0.83562 1.90778 1.47483 1.20135 1.87300 1.20740 1.08286 0.97337 0.93584 1.23209 0.90956 0.88632 0.98128 1.67644 1.16777 1.36640 0.97693 1.19806 0.96265 0.90577 0.93468 1.19876 1.05514 1.03437 0.88378 1.25965 1.00953 0.96052 1.04529 1.84368 1.66989 1.14527 0.93172 1.23765 1.10737 0.99891 1.00790 1.21090 0.90835 0.99236 0.89187 1.21557 0.94206 0.96980 0.87244 1.23039 0.99481 0.95267 1.04688 1.23359 0.99923 0.98354 1.04311 0.92948 0.91151 0.94879 0.92608 0.89432 0.90512 0.93332 0.74722 0.79269 0.81078 0.76499 0.83052 0.85175 0.91453 0.86889 0.87217 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.89 13.97 21.65 0.30 -57.59 16 2 C -0.01 -0.75 5.28 84.86 0.45 -0.30 16 3 Si 0.93 45.64 25.31 68.60 1.74 47.38 16 4 H -0.27 -12.66 6.52 99.48 0.65 -12.01 16 5 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 6 H -0.26 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.25 -13.21 8.93 84.03 0.75 -12.46 16 8 H 0.05 2.87 6.86 -2.91 -0.02 2.85 16 9 N -0.59 -25.38 2.38 -678.03 -1.61 -26.99 16 10 C 0.13 5.08 4.56 86.38 0.39 5.48 16 11 C -0.13 -3.94 5.65 30.60 0.17 -3.76 16 12 C 0.13 3.60 5.67 86.38 0.49 4.09 16 13 N -0.71 -16.94 5.51 -466.22 -2.57 -19.50 16 14 C 0.57 15.34 7.77 86.71 0.67 16.02 16 15 O -0.58 -19.87 16.41 -4.02 -0.07 -19.93 16 16 C -0.19 -4.37 5.89 -20.03 -0.12 -4.48 16 17 C 0.16 3.27 10.69 85.33 0.91 4.18 16 18 N -0.48 -10.55 10.39 -188.74 -1.96 -12.51 16 19 C 0.13 2.66 6.96 39.70 0.28 2.94 16 20 C -0.14 -1.89 10.16 21.79 0.22 -1.67 16 21 C -0.14 -1.18 11.08 66.76 0.74 -0.44 16 22 S 0.15 1.83 23.29 -56.49 -1.32 0.52 16 23 C -0.23 -4.57 6.49 22.99 0.15 -4.42 16 24 C 0.03 0.58 9.73 22.87 0.22 0.81 16 25 C 0.11 3.84 6.57 44.99 0.30 4.13 16 26 C -0.19 -6.56 9.80 30.60 0.30 -6.26 16 27 C -0.22 -7.65 10.35 30.60 0.32 -7.33 16 28 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 30 H 0.03 1.45 3.45 -2.39 -0.01 1.44 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.41 7.51 6.53 -92.71 -0.61 6.91 16 36 H 0.19 2.64 6.41 -2.91 -0.02 2.63 16 37 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.22 0.07 8.06 -2.91 -0.02 0.05 16 39 H 0.15 3.24 7.72 -2.91 -0.02 3.22 16 40 H 0.13 3.68 8.14 -2.39 -0.02 3.66 16 41 H 0.07 2.86 6.44 -2.39 -0.02 2.85 16 42 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -73.76 378.62 1.14 -72.62 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.38 Total: 19.50 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 6.25 Total: -3.50 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -5.84 Total: -116.59 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.07 Total: -19.93 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.74 Total: 47.38 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.32 Total: 0.52 kcal Total: -73.76 1.14 -72.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566594184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.916 kcal (2) G-P(sol) polarization free energy of solvation -73.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds