Wall clock time and date at job start Wed Apr 1 2020 03:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30702 * 122.10477 * 2 1 4 4 C 1.30567 * 115.90177 * 180.02562 * 3 2 1 5 5 C 1.47255 * 125.53721 * 180.02562 * 4 3 2 6 6 O 1.21613 * 120.00318 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99431 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72410 * 7 5 4 9 9 C 1.50703 * 109.47138 * 180.28062 * 8 7 5 10 10 C 1.38233 * 119.99680 * 269.72871 * 9 8 7 11 11 C 1.38240 * 120.00155 * 179.76981 * 10 9 8 12 12 C 1.38241 * 119.99430 * 0.47615 * 11 10 9 13 13 C 1.50695 * 119.99655 * 179.77268 * 12 11 10 14 14 N 1.46502 * 109.47431 * 270.02262 * 13 12 11 15 15 C 1.36936 * 120.00293 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99933 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00060 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99978 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00063 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47176 * 89.99693 * 19 17 15 21 21 H 1.48506 * 109.46863 * 209.99920 * 19 17 15 22 22 H 1.48504 * 109.47041 * 329.99363 * 19 17 15 23 23 C 1.38233 * 120.00075 * 359.79594 * 12 11 10 24 24 C 1.38231 * 120.00146 * 89.99859 * 9 8 7 25 25 S 1.76097 * 108.91426 * 0.26830 * 4 3 2 26 26 C 1.34234 * 122.10747 * 180.02562 * 2 1 3 27 27 C 1.50697 * 125.45379 * 359.97438 * 26 2 1 28 28 H 1.09011 * 109.47323 * 89.96838 * 1 2 3 29 29 H 1.09004 * 109.47505 * 209.97125 * 1 2 3 30 30 H 1.09001 * 109.47228 * 329.97678 * 1 2 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 32 32 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 33 33 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 34 34 H 1.08005 * 120.00115 * 359.97438 * 10 9 8 35 35 H 1.07995 * 120.00252 * 180.25669 * 11 10 9 36 36 H 1.09000 * 109.47642 * 30.02444 * 13 12 11 37 37 H 1.08998 * 109.47269 * 150.02425 * 13 12 11 38 38 H 0.97000 * 119.99844 * 0.02562 * 14 13 12 39 39 H 0.96991 * 119.99957 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.00181 * 179.97438 * 23 12 11 41 41 H 1.07994 * 120.00283 * 0.02562 * 24 9 8 42 42 H 1.09006 * 109.47071 * 90.00159 * 27 26 2 43 43 H 1.09000 * 109.47272 * 209.99929 * 27 26 2 44 44 H 1.09001 * 109.47139 * 330.00743 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2016 1.1072 0.0000 4 6 3.4997 0.9661 -0.0005 5 6 4.4800 2.0648 -0.0001 6 8 4.0990 3.2198 0.0013 7 7 5.7996 1.7905 -0.0002 8 6 6.7749 2.8836 -0.0059 9 6 8.1695 2.3124 -0.0117 10 6 8.8167 2.0570 1.1827 11 6 10.0942 1.5286 1.1775 12 6 10.7281 1.2649 -0.0224 13 6 12.1226 0.6937 -0.0281 14 7 13.0980 1.7867 -0.0338 15 6 14.4387 1.5079 -0.0402 16 1 14.7770 0.4823 -0.0406 17 6 15.3630 2.5436 -0.0450 18 7 14.9507 3.7936 -0.0440 19 14 17.1918 2.1634 -0.0544 20 1 17.6692 2.0624 -1.4569 21 1 17.9268 3.2498 0.6418 22 1 17.4332 0.8756 0.6447 23 6 10.0829 1.5255 -1.2168 24 6 8.8036 2.0491 -1.2115 25 16 3.8871 -0.7517 -0.0089 26 6 2.2205 -1.1370 -0.0005 27 6 1.6453 -2.5299 -0.0006 28 1 -0.3634 0.0006 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5142 31 1 6.1035 0.8693 -0.0009 32 1 6.6294 3.4958 -0.8959 33 1 6.6376 3.4978 0.8840 34 1 8.3232 2.2672 2.1201 35 1 10.5982 1.3252 2.1107 36 1 12.2682 0.0814 0.8619 37 1 12.2600 0.0795 -0.9180 38 1 12.7942 2.7079 -0.0331 39 1 15.5965 4.5173 -0.0470 40 1 10.5783 1.3199 -2.1542 41 1 8.2998 2.2531 -2.1447 42 1 1.5062 -2.8655 -1.0283 43 1 2.3294 -3.2056 0.5128 44 1 0.6841 -2.5261 0.5135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568121706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:39 Heat of formation + Delta-G solvation = 16.877080 kcal Electronic energy + Delta-G solvation = -25418.864751 eV Core-core repulsion = 21654.981071 eV Total energy + Delta-G solvation = -3763.883680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.49688 -40.72502 -40.02561 -36.98501 -35.88978 -34.37114 -33.75713 -31.94162 -31.84943 -30.78158 -29.03648 -27.31875 -26.12640 -25.40298 -24.03424 -23.62500 -22.21859 -21.73590 -20.18313 -19.52170 -19.32252 -18.40815 -17.21725 -17.02243 -16.90293 -16.49058 -16.44777 -16.03289 -15.68154 -15.43845 -15.24196 -14.94143 -14.82258 -14.33280 -14.18648 -14.13566 -14.00319 -13.82685 -13.70397 -13.52729 -13.25004 -13.12271 -12.99115 -12.85534 -12.76405 -12.20169 -12.18445 -11.97464 -11.90978 -11.77819 -11.70600 -10.97970 -10.80521 -10.52753 -10.41312 -9.81599 -9.68445 -9.67045 -9.02714 -7.95443 -5.25689 -0.90096 0.03630 0.20809 0.49261 0.51213 1.16316 1.48116 1.49957 1.58495 1.74014 2.02631 2.55214 2.83444 3.30313 3.37925 3.58755 3.72749 3.86014 3.89236 3.97565 4.04894 4.14296 4.25365 4.27347 4.54064 4.56155 4.64251 4.65090 4.68924 4.73633 4.78107 4.90754 4.90794 4.91412 5.03959 5.06158 5.08023 5.20573 5.33084 5.45451 5.48205 5.58698 5.81990 6.05535 6.12401 6.25251 6.56485 6.86332 7.32065 8.05362 8.30059 9.27752 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.027896 B = 0.001680 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.500547 B =16657.990037 C =17341.080502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.021 3.979 3 N -0.429 5.429 4 C -0.052 4.052 5 C 0.596 3.404 6 O -0.549 6.549 7 N -0.700 5.700 8 C 0.172 3.828 9 C -0.113 4.113 10 C -0.096 4.096 11 C -0.115 4.115 12 C -0.084 4.084 13 C 0.185 3.815 14 N -0.739 5.739 15 C -0.249 4.249 16 H 0.079 0.921 17 C -0.075 4.075 18 N -0.969 5.969 19 Si 0.976 3.024 20 H -0.286 1.286 21 H -0.296 1.296 22 H -0.268 1.268 23 C -0.115 4.115 24 C -0.096 4.096 25 S 0.239 5.761 26 C -0.216 4.216 27 C -0.083 4.083 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.411 0.589 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.144 0.856 35 H 0.123 0.877 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.123 0.877 41 H 0.143 0.857 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.640 -15.560 0.121 34.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 N -0.147 5.147 4 C -0.326 4.326 5 C 0.379 3.621 6 O -0.426 6.426 7 N -0.353 5.353 8 C 0.050 3.950 9 C -0.114 4.114 10 C -0.114 4.114 11 C -0.134 4.134 12 C -0.085 4.085 13 C 0.059 3.941 14 N -0.382 5.382 15 C -0.380 4.380 16 H 0.097 0.903 17 C -0.267 4.267 18 N -0.620 5.620 19 Si 0.805 3.195 20 H -0.213 1.213 21 H -0.223 1.223 22 H -0.192 1.192 23 C -0.134 4.134 24 C -0.114 4.114 25 S 0.494 5.506 26 C -0.339 4.339 27 C -0.141 4.141 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.248 0.752 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.161 0.839 35 H 0.141 0.859 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.205 0.795 39 H 0.060 0.940 40 H 0.141 0.859 41 H 0.161 0.839 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -29.971 -14.853 0.124 33.450 hybrid contribution 0.527 0.381 -0.033 0.651 sum -29.444 -14.473 0.091 32.809 Atomic orbital electron populations 1.20521 0.85018 1.04325 1.03900 1.20693 1.00234 0.85505 1.05140 1.66472 1.04443 1.32702 1.11057 1.26993 0.94005 0.97118 1.14448 1.16905 0.81949 0.86461 0.76741 1.90830 1.79925 1.21481 1.50375 1.45754 1.03767 1.11403 1.74331 1.20211 0.82744 0.88080 1.03979 1.19720 0.95573 1.02548 0.93571 1.21221 0.94194 0.97564 0.98431 1.21181 0.95320 0.99304 0.97574 1.20189 0.95323 0.98723 0.94272 1.19780 0.85217 0.90422 0.98690 1.42539 1.01834 1.04347 1.89467 1.19679 0.83809 0.92969 1.41561 0.90308 1.25607 1.02508 0.95087 1.03486 1.69836 1.34238 0.98609 1.59269 0.85101 0.79848 0.77085 0.77466 1.21340 1.22262 1.19233 1.21177 0.95231 0.99348 0.97630 1.21216 0.94252 0.97589 0.98363 1.83568 1.04478 0.99473 1.63047 1.26033 0.97512 1.03192 1.07152 1.20588 1.02391 0.86307 1.04860 0.89714 0.87799 0.91540 0.75189 0.89839 0.89816 0.83874 0.85898 0.95078 0.95074 0.79504 0.93999 0.85907 0.83885 0.88355 0.89350 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.02 71.24 0.71 -0.11 16 2 C 0.02 0.36 6.68 41.81 0.28 0.64 16 3 N -0.43 -10.52 10.57 -178.24 -1.88 -12.40 16 4 C -0.05 -1.14 7.46 87.25 0.65 -0.49 16 5 C 0.60 14.73 7.81 86.61 0.68 15.41 16 6 O -0.55 -18.17 17.07 -4.07 -0.07 -18.24 16 7 N -0.70 -13.03 5.54 -470.27 -2.61 -15.64 16 8 C 0.17 3.39 5.80 85.63 0.50 3.89 16 9 C -0.11 -2.45 5.25 -19.87 -0.10 -2.55 16 10 C -0.10 -2.21 9.70 22.27 0.22 -2.00 16 11 C -0.12 -3.32 9.70 22.27 0.22 -3.10 16 12 C -0.08 -2.77 5.25 -19.87 -0.10 -2.87 16 13 C 0.18 7.34 6.38 85.63 0.55 7.89 16 14 N -0.74 -37.78 5.59 -347.18 -1.94 -39.73 16 15 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 16 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 17 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 18 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 19 Si 0.98 45.91 29.55 68.60 2.03 47.94 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 C -0.12 -3.32 9.70 22.27 0.22 -3.11 16 24 C -0.10 -2.22 9.70 22.27 0.22 -2.00 16 25 S 0.24 3.02 22.28 -56.49 -1.26 1.76 16 26 C -0.22 -2.54 6.36 24.77 0.16 -2.39 16 27 C -0.08 -0.30 10.04 71.24 0.72 0.42 16 28 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.10 0.45 6.60 -2.38 -0.02 0.44 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.41 5.86 7.61 -92.71 -0.71 5.16 16 32 H 0.08 1.68 8.09 -2.38 -0.02 1.66 16 33 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16 34 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.12 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.03 1.22 8.09 -2.39 -0.02 1.20 16 37 H 0.03 1.22 8.09 -2.39 -0.02 1.20 16 38 H 0.37 20.62 7.66 -92.71 -0.71 19.91 16 39 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 40 H 0.12 3.51 8.06 -2.91 -0.02 3.49 16 41 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.10 0.15 8.14 -2.38 -0.02 0.13 16 43 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.10 0.07 6.65 -2.39 -0.02 0.06 16 Total: -1.00 -76.60 392.13 0.38 -76.22 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -0.37 Total: 26.71 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 6.20 Total: -7.23 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -6.15 Total: -127.16 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.07 Total: -18.24 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.26 Total: 1.76 kcal Total: -76.60 0.38 -76.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568121706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.101 kcal (2) G-P(sol) polarization free energy of solvation -76.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds