Wall clock time and date at job start Wed Apr 1 2020 03:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.45691 * 2 1 4 4 C 1.36935 * 119.99910 * 60.00628 * 3 2 1 5 5 H 1.08004 * 119.99995 * 359.97438 * 4 3 2 6 6 C 1.38813 * 120.00195 * 179.97438 * 4 3 2 7 7 N 1.31621 * 119.99956 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00254 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47466 * 270.00237 * 8 6 4 10 10 H 1.48500 * 109.47308 * 30.00384 * 8 6 4 11 11 H 1.48499 * 109.47313 * 150.00379 * 8 6 4 12 12 C 1.53042 * 109.46003 * 119.97550 * 2 1 3 13 13 C 1.53164 * 109.32237 * 181.38391 * 12 2 1 14 14 N 1.46922 * 108.77023 * 305.35603 * 13 12 2 15 15 C 1.34775 * 120.62998 * 233.58668 * 14 13 12 16 16 O 1.21584 * 119.99989 * 174.17222 * 15 14 13 17 17 C 1.47590 * 119.99978 * 354.17867 * 15 14 13 18 18 C 1.40196 * 120.12767 * 138.17934 * 17 15 14 19 19 C 1.35753 * 120.61623 * 179.68594 * 18 17 15 20 20 C 1.41241 * 120.63383 * 0.60821 * 19 18 17 21 21 N 1.34417 * 129.48285 * 179.69964 * 20 19 18 22 22 C 1.28057 * 117.91354 * 179.97438 * 21 20 19 23 23 S 1.70644 * 111.52149 * 359.97438 * 22 21 20 24 24 C 1.40152 * 118.74216 * 359.67200 * 20 19 18 25 25 C 1.38912 * 120.41380 * 0.02562 * 24 20 19 26 26 C 1.46921 * 118.74087 * 53.61241 * 14 13 12 27 27 C 1.53036 * 109.45812 * 240.03036 * 2 1 3 28 28 H 1.08996 * 109.47414 * 59.99725 * 1 2 3 29 29 H 1.08994 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47047 * 299.99489 * 1 2 3 31 31 H 0.96998 * 119.99998 * 239.99674 * 3 2 1 32 32 H 0.97000 * 119.99971 * 359.97438 * 7 6 4 33 33 H 1.08993 * 109.49746 * 301.32080 * 12 2 1 34 34 H 1.08997 * 109.49593 * 61.41853 * 12 2 1 35 35 H 1.09002 * 109.58924 * 185.56773 * 13 12 2 36 36 H 1.09002 * 109.70869 * 65.21526 * 13 12 2 37 37 H 1.08003 * 119.69097 * 359.97438 * 18 17 15 38 38 H 1.08003 * 119.68348 * 180.28099 * 19 18 17 39 39 H 1.08004 * 124.24178 * 179.97438 * 22 21 20 40 40 H 1.07995 * 120.07961 * 180.02562 * 25 24 20 41 41 H 1.08999 * 109.58933 * 186.60428 * 26 14 13 42 42 H 1.09002 * 109.70559 * 66.24229 * 26 14 13 43 43 H 1.08997 * 109.49956 * 298.58165 * 27 2 1 44 44 H 1.09007 * 109.49929 * 58.64316 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6871 2.2243 1.0271 5 1 1.0660 1.8710 1.8370 6 6 2.1498 3.5331 1.0274 7 7 2.9064 3.9638 0.0402 8 14 1.6978 4.6833 2.4281 9 1 0.4353 5.3923 2.0987 10 1 1.5133 3.8971 3.6743 11 1 2.7855 5.6749 2.6250 12 6 2.0399 -0.7210 1.2500 13 6 3.5711 -0.6890 1.2643 14 7 4.0676 -1.2493 0.0002 15 6 4.9616 -2.2578 0.0002 16 8 5.2848 -2.7837 -1.0473 17 6 5.5483 -2.7238 1.2718 18 6 5.7109 -4.0956 1.5108 19 6 6.2552 -4.5350 2.6742 20 6 6.6565 -3.6194 3.6719 21 7 7.2033 -3.8541 4.8773 22 6 7.4850 -2.8456 5.6144 23 16 7.0777 -1.3766 4.8477 24 6 6.4887 -2.2483 3.4353 25 6 5.9370 -1.8032 2.2406 26 6 3.5713 -0.6889 -1.2641 27 6 2.0398 -0.7208 -1.2500 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.5756 1.6987 -0.7275 32 1 3.1408 3.3667 -0.6873 33 1 1.6575 -0.2209 2.1398 34 1 1.6976 -1.7557 1.2381 35 1 3.9413 -1.2849 2.0986 36 1 3.9163 0.3397 1.3687 37 1 5.4045 -4.8094 0.7603 38 1 6.3777 -5.5951 2.8406 39 1 7.9253 -2.9160 6.5981 40 1 5.8104 -0.7454 2.0638 41 1 3.9416 -1.2849 -2.0983 42 1 3.9144 0.3403 -1.3697 43 1 1.6975 -1.7556 -1.2383 44 1 1.6568 -0.2210 -2.1399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570386074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:13 Heat of formation + Delta-G solvation = 46.847592 kcal Electronic energy + Delta-G solvation = -28284.996892 eV Core-core repulsion = 24522.412831 eV Total energy + Delta-G solvation = -3762.584061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.96364 -39.90432 -38.06899 -36.72956 -34.75779 -32.73997 -31.70201 -30.93504 -30.10177 -28.78533 -27.81095 -25.69468 -23.95723 -23.76021 -23.00395 -22.78236 -21.76083 -20.20938 -18.90864 -18.26735 -17.38770 -17.04877 -16.78056 -15.92624 -15.81786 -15.17907 -15.08130 -14.69141 -14.44870 -14.27796 -14.01428 -13.87917 -13.68224 -13.58460 -13.07094 -12.88451 -12.72078 -12.61906 -12.42228 -11.89265 -11.64999 -11.43764 -11.33475 -11.14636 -10.87447 -10.81751 -10.62798 -10.43864 -10.29221 -10.04998 -9.99995 -9.93411 -9.75695 -9.14522 -9.00138 -8.98823 -8.41155 -8.31801 -7.08555 -6.13558 -3.14622 -0.06230 0.87897 0.96413 1.43969 1.83024 2.78360 3.08617 3.47203 3.48425 3.50770 3.64665 3.68822 4.28886 4.41670 4.61069 4.75216 4.86640 4.97369 5.12170 5.17198 5.21730 5.27494 5.44982 5.47414 5.53547 5.63776 5.65968 5.70758 5.83321 5.91380 5.93136 6.00152 6.04735 6.13487 6.27557 6.29764 6.32208 6.38414 6.46313 6.61379 6.71274 6.89283 6.95792 7.24929 7.55114 7.77516 8.19083 8.70818 9.16912 10.03620 10.19359 11.34062 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.003873 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.399354 B = 7227.097699 C = 9063.147743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.203 3.797 3 N -0.728 5.728 4 C -0.324 4.324 5 H 0.065 0.935 6 C -0.043 4.043 7 N -0.944 5.944 8 Si 1.076 2.924 9 H -0.297 1.297 10 H -0.295 1.295 11 H -0.289 1.289 12 C -0.133 4.133 13 C 0.107 3.893 14 N -0.591 5.591 15 C 0.558 3.442 16 O -0.543 6.543 17 C -0.103 4.103 18 C -0.059 4.059 19 C -0.070 4.070 20 C 0.094 3.906 21 N -0.469 5.469 22 C 0.065 3.935 23 S 0.120 5.880 24 C -0.190 4.190 25 C -0.032 4.032 26 C 0.117 3.883 27 C -0.131 4.131 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.366 0.634 32 H 0.255 0.745 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.205 0.795 40 H 0.144 0.856 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 -14.636 7.800 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.111 3.889 3 N -0.372 5.372 4 C -0.455 4.455 5 H 0.083 0.917 6 C -0.241 4.241 7 N -0.590 5.590 8 Si 0.908 3.092 9 H -0.225 1.225 10 H -0.222 1.222 11 H -0.215 1.215 12 C -0.173 4.173 13 C -0.015 4.015 14 N -0.322 5.322 15 C 0.346 3.654 16 O -0.422 6.422 17 C -0.110 4.110 18 C -0.081 4.081 19 C -0.091 4.091 20 C -0.027 4.027 21 N -0.182 5.182 22 C -0.239 4.239 23 S 0.375 5.625 24 C -0.309 4.309 25 C -0.054 4.054 26 C -0.005 4.005 27 C -0.169 4.169 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.201 0.799 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.222 0.778 40 H 0.162 0.838 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.392 -12.890 8.623 16.774 hybrid contribution -0.394 -1.929 -1.109 2.260 sum 5.998 -14.819 7.515 17.665 Atomic orbital electron populations 1.22191 0.97418 0.99036 1.02162 1.19463 0.92232 0.85699 0.91457 1.42523 1.61213 1.06677 1.26792 1.19939 1.29591 0.94452 1.01469 0.91702 1.25634 0.99056 0.95913 1.03480 1.70862 1.38905 1.37969 1.11221 0.83270 0.75909 0.75737 0.74278 1.22453 1.22213 1.21519 1.22279 0.94356 0.99244 1.01447 1.22055 0.95611 0.99889 0.83979 1.48038 1.41603 1.33919 1.08632 1.18096 0.79481 0.79679 0.88189 1.90771 1.62069 1.56802 1.32591 1.19905 1.02283 0.94221 0.94565 1.20691 0.96453 0.94304 0.96611 1.20268 0.98433 0.99212 0.91206 1.19383 1.00137 0.91084 0.92090 1.66213 1.14222 1.33623 1.04124 1.28221 1.00898 0.90907 1.03910 1.84283 1.59629 1.10484 1.08142 1.23744 1.09291 0.96972 1.00915 1.20686 0.94718 1.00502 0.89533 1.21594 0.94317 0.99131 0.85475 1.22110 0.94754 1.00690 0.99373 0.93234 0.94517 0.92445 0.79936 0.93413 0.90480 0.93197 0.90723 0.89219 0.83877 0.84169 0.77825 0.83837 0.89523 0.90730 0.91647 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.44 37.16 0.31 -2.27 16 2 C 0.20 3.62 0.74 -131.78 -0.10 3.52 16 3 N -0.73 -16.01 4.14 -47.20 -0.20 -16.21 16 4 C -0.32 -8.10 8.68 -15.06 -0.13 -8.23 16 5 H 0.07 1.62 6.70 -52.48 -0.35 1.27 16 6 C -0.04 -1.16 5.50 -17.43 -0.10 -1.25 16 7 N -0.94 -27.46 13.70 55.49 0.76 -26.70 16 8 Si 1.08 24.66 29.92 -169.99 -5.09 19.58 16 9 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.30 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 C -0.13 -2.20 4.70 -26.62 -0.13 -2.33 16 13 C 0.11 1.69 4.66 -3.73 -0.02 1.68 16 14 N -0.59 -9.38 2.97 -174.00 -0.52 -9.90 16 15 C 0.56 8.93 7.29 -12.45 -0.09 8.84 16 16 O -0.54 -10.03 16.37 5.29 0.09 -9.95 16 17 C -0.10 -1.41 5.08 -105.00 -0.53 -1.94 16 18 C -0.06 -0.70 9.55 -39.74 -0.38 -1.08 16 19 C -0.07 -0.78 10.03 -39.33 -0.39 -1.18 16 20 C 0.09 1.17 7.00 -84.88 -0.59 0.58 16 21 N -0.47 -5.50 10.56 -12.83 -0.14 -5.63 16 22 C 0.06 0.57 12.11 51.19 0.62 1.19 16 23 S 0.12 1.18 23.17 -107.50 -2.49 -1.31 16 24 C -0.19 -2.36 6.54 -38.61 -0.25 -2.62 16 25 C -0.03 -0.41 7.41 -38.98 -0.29 -0.70 16 26 C 0.12 1.88 6.17 -3.71 -0.02 1.86 16 27 C -0.13 -2.05 4.96 -26.61 -0.13 -2.18 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.07 7.27 -51.93 -0.38 0.70 16 31 H 0.37 8.52 5.30 -40.82 -0.22 8.30 16 32 H 0.25 7.29 6.77 -40.82 -0.28 7.01 16 33 H 0.08 1.37 7.31 -51.93 -0.38 0.99 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.06 4.82 -51.93 -0.25 0.81 16 36 H 0.09 1.66 7.73 -51.93 -0.40 1.26 16 37 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 38 H 0.14 1.25 8.06 -52.48 -0.42 0.82 16 39 H 0.21 0.96 8.06 -52.48 -0.42 0.54 16 40 H 0.14 1.89 6.71 -52.49 -0.35 1.54 16 41 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 42 H 0.07 1.30 6.94 -51.93 -0.36 0.94 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 362.43 15.07 5.46 5.46 Total: -1.00 -31.15 362.43 -9.84 -40.99 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.51 Total: 9.78 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -2.22 Total: -6.12 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.09 Total: -58.44 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.09 Total: 19.58 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.49 Total: -1.31 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.15 -9.84 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570386074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.841 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds