Wall clock time and date at job start Wed Apr 1 2020 02:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86810 * 119.99465 * 2 1 4 4 H 1.48501 * 109.47107 * 269.99634 * 3 2 1 5 5 H 1.48497 * 109.47088 * 29.99907 * 3 2 1 6 6 H 1.48503 * 109.46861 * 149.99849 * 3 2 1 7 7 C 1.38808 * 120.00583 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00082 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00300 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00174 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47034 * 174.70281 * 10 9 7 12 12 H 1.08997 * 109.69872 * 318.15887 * 11 10 9 13 13 C 1.53192 * 109.58424 * 197.80553 * 11 10 9 14 14 C 1.53043 * 109.31330 * 185.57726 * 13 11 10 15 15 C 1.53044 * 109.53629 * 61.36077 * 14 13 11 16 16 C 1.53187 * 109.31292 * 298.63806 * 15 14 13 17 17 N 1.46924 * 108.77937 * 54.63670 * 16 15 14 18 18 C 1.34777 * 120.63137 * 126.11666 * 17 16 15 19 19 O 1.21589 * 119.99978 * 173.54668 * 18 17 16 20 20 C 1.47560 * 120.00203 * 353.54328 * 18 17 16 21 21 C 1.40114 * 120.58651 * 327.84017 * 20 18 17 22 22 N 1.30617 * 121.17173 * 179.71170 * 21 20 18 23 23 C 1.34914 * 122.44218 * 0.55334 * 22 21 20 24 24 C 1.40619 * 128.45621 * 179.71354 * 23 22 21 25 25 C 1.32275 * 115.91089 * 180.02562 * 24 23 22 26 26 S 1.75509 * 110.83692 * 0.02562 * 25 24 23 27 27 C 1.40091 * 119.27294 * 359.74152 * 23 22 21 28 28 C 1.39362 * 119.75340 * 359.97273 * 27 23 22 29 29 H 0.96997 * 120.01076 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99841 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47084 * 54.70060 * 10 9 7 32 32 H 1.09004 * 109.46773 * 294.69886 * 10 9 7 33 33 H 1.08998 * 109.49881 * 65.62466 * 13 11 10 34 34 H 1.09006 * 109.52214 * 305.54077 * 13 11 10 35 35 H 1.08996 * 109.45599 * 301.34743 * 14 13 11 36 36 H 1.08993 * 109.45892 * 181.38691 * 14 13 11 37 37 H 1.08997 * 109.49145 * 178.68645 * 15 14 13 38 38 H 1.09003 * 109.49240 * 58.58840 * 15 14 13 39 39 H 1.09005 * 109.58669 * 294.84594 * 16 15 14 40 40 H 1.09000 * 109.70377 * 174.49363 * 16 15 14 41 41 H 1.07997 * 119.41624 * 359.97438 * 21 20 18 42 42 H 1.07998 * 122.04513 * 0.02562 * 24 23 22 43 43 H 1.08002 * 124.58437 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.73344 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1123 -2.4706 0.0011 11 6 5.6113 -2.1940 -0.1315 12 1 5.7760 -1.4079 -0.8683 13 6 6.3321 -3.4714 -0.5733 14 6 7.8429 -3.2272 -0.5696 15 6 8.3016 -2.8795 0.8485 16 6 7.6031 -1.5954 1.3064 17 7 6.1510 -1.7718 1.1682 18 6 5.3303 -1.5559 2.2152 19 8 4.1248 -1.5902 2.0600 20 6 5.8946 -1.2778 3.5500 21 6 7.1119 -1.8499 3.9427 22 7 7.6246 -1.6071 5.1193 23 6 7.0176 -0.8100 6.0228 24 6 7.4486 -0.4687 7.3171 25 6 6.6523 0.3396 7.9970 26 16 5.2376 0.7648 7.0494 27 6 5.7943 -0.2110 5.6953 28 6 5.2223 -0.4444 4.4461 29 1 -0.4851 0.8399 -0.0004 30 1 3.8646 -0.3619 0.0007 31 1 3.7801 -3.0820 -0.8379 32 1 3.9217 -3.0002 0.9346 33 1 6.0098 -3.7418 -1.5789 34 1 6.0929 -4.2816 0.1156 35 1 8.0788 -2.4010 -1.2403 36 1 8.3570 -4.1270 -0.9073 37 1 9.3811 -2.7286 0.8548 38 1 8.0437 -3.6948 1.5244 39 1 7.9303 -0.7604 0.6867 40 1 7.8491 -1.3949 2.3491 41 1 7.6376 -2.4997 3.2589 42 1 8.3731 -0.8435 7.7306 43 1 6.8461 0.6898 9.0001 44 1 4.2796 0.0089 4.1772 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570513004.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:29 Heat of formation + Delta-G solvation = 94.884304 kcal Electronic energy + Delta-G solvation = -28521.827739 eV Core-core repulsion = 24761.326706 eV Total energy + Delta-G solvation = -3760.501033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.12936 -39.81061 -37.21107 -36.10903 -34.60943 -32.88627 -32.60760 -32.10111 -30.38381 -29.75705 -26.70759 -25.12232 -24.40952 -24.17151 -22.47963 -21.83144 -21.26332 -20.63488 -19.50570 -18.17039 -17.39894 -17.06371 -16.84563 -16.26249 -15.82507 -14.96134 -14.81537 -14.52663 -14.44566 -14.18742 -14.15331 -13.92633 -13.74173 -13.34322 -13.24016 -12.86510 -12.64846 -12.59593 -12.50413 -12.28987 -11.89071 -11.79502 -11.30658 -11.28078 -11.12719 -10.88920 -10.80736 -10.65820 -10.55423 -10.31546 -10.02002 -9.80315 -9.43099 -8.96642 -8.75532 -8.66442 -8.27449 -8.22513 -6.89917 -5.59412 -2.85265 0.05459 0.85549 1.15212 1.62673 1.77262 3.02758 3.08079 3.46030 3.49539 3.52965 3.66131 3.84429 4.39129 4.46191 4.58473 4.67494 4.74265 4.74975 4.78429 4.84858 4.98649 5.03359 5.21747 5.26380 5.35391 5.45392 5.48255 5.61299 5.64678 5.69324 5.72291 5.74785 5.80557 5.88172 5.94003 5.96026 6.01030 6.09637 6.23945 6.30763 6.49171 6.76630 7.12790 7.55458 7.62735 8.16929 8.53568 8.60318 9.40286 10.13514 10.34745 11.60328 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008920 B = 0.004671 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.117176 B = 5992.538981 C = 8571.499881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.004 4.004 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.209 4.209 8 H 0.087 0.913 9 N -0.726 5.726 10 C 0.160 3.840 11 C 0.139 3.861 12 H 0.071 0.929 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.137 4.137 16 C 0.081 3.919 17 N -0.608 5.608 18 C 0.526 3.474 19 O -0.441 6.441 20 C -0.162 4.162 21 C 0.138 3.862 22 N -0.462 5.462 23 C 0.132 3.868 24 C -0.117 4.117 25 C -0.174 4.174 26 S 0.125 5.875 27 C -0.203 4.203 28 C 0.020 3.980 29 H 0.256 0.744 30 H 0.356 0.644 31 H 0.028 0.972 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.179 0.821 42 H 0.152 0.848 43 H 0.176 0.824 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.140 -3.144 11.031 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.198 4.198 3 Si 0.714 3.286 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.208 1.208 7 C -0.339 4.339 8 H 0.105 0.895 9 N -0.369 5.369 10 C 0.033 3.967 11 C 0.037 3.963 12 H 0.089 0.911 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.175 4.175 16 C -0.042 4.042 17 N -0.345 5.345 18 C 0.311 3.689 19 O -0.310 6.310 20 C -0.172 4.172 21 C -0.033 4.033 22 N -0.171 5.171 23 C -0.002 4.002 24 C -0.148 4.148 25 C -0.310 4.310 26 S 0.388 5.612 27 C -0.321 4.321 28 C -0.011 4.011 29 H 0.066 0.934 30 H 0.189 0.811 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.196 0.804 42 H 0.170 0.830 43 H 0.194 0.806 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 20.736 -2.654 11.594 23.905 hybrid contribution 1.114 0.862 -0.389 1.461 sum 21.850 -1.792 11.206 24.621 Atomic orbital electron populations 1.69691 1.04988 1.25309 1.59197 1.24559 0.95108 0.96780 1.03336 0.86556 0.79178 0.85513 0.77395 1.21536 1.22096 1.20754 1.19037 0.80832 0.94396 1.39675 0.89548 1.42558 1.03720 1.01655 1.89004 1.20944 0.86167 0.90489 0.99071 1.21601 0.95613 0.95708 0.83403 0.91088 1.21923 0.94740 0.97699 1.02243 1.21497 0.96008 1.01638 0.96357 1.21949 1.00013 0.97764 0.97778 1.22340 0.80556 0.97952 1.03331 1.47816 1.06198 1.69539 1.10932 1.17980 0.87177 0.80527 0.83185 1.91267 1.12544 1.44786 1.82449 1.21136 0.97367 1.01620 0.97047 1.23266 0.91430 0.96580 0.92018 1.67607 1.33572 1.13956 1.01978 1.19197 0.90918 0.95470 0.94609 1.19600 1.02320 1.00573 0.92266 1.25412 0.98243 1.02992 1.04382 1.84482 1.22668 1.49140 1.04908 1.23532 1.01280 1.06682 1.00579 1.21030 0.98327 0.92827 0.88868 0.93444 0.81150 0.95473 0.93245 0.90441 0.91275 0.91772 0.91682 0.90706 0.91318 0.91452 0.88341 0.80440 0.83008 0.80621 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.97 13.97 55.49 0.78 -30.19 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 3 Si 0.88 23.55 27.74 -169.99 -4.71 18.83 16 4 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 5 H -0.29 -7.94 7.11 56.52 0.40 -7.54 16 6 H -0.28 -7.23 6.52 56.52 0.37 -6.87 16 7 C -0.21 -6.23 10.35 -15.06 -0.16 -6.38 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 N -0.73 -18.21 3.22 -59.91 -0.19 -18.40 16 10 C 0.16 3.25 4.93 -4.04 -0.02 3.23 16 11 C 0.14 2.13 2.90 -67.60 -0.20 1.93 16 12 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 13 C -0.13 -1.45 5.29 -26.61 -0.14 -1.59 16 14 C -0.12 -1.03 5.88 -26.69 -0.16 -1.19 16 15 C -0.14 -1.11 5.72 -26.61 -0.15 -1.26 16 16 C 0.08 0.84 5.53 -3.71 -0.02 0.82 16 17 N -0.61 -8.79 2.97 -166.43 -0.49 -9.28 16 18 C 0.53 9.18 7.16 -12.46 -0.09 9.09 16 19 O -0.44 -9.88 10.99 5.29 0.06 -9.82 16 20 C -0.16 -2.45 5.48 -104.87 -0.57 -3.03 16 21 C 0.14 1.74 8.59 -17.36 -0.15 1.59 16 22 N -0.46 -6.09 10.39 -11.02 -0.11 -6.21 16 23 C 0.13 1.70 6.97 -84.92 -0.59 1.11 16 24 C -0.12 -1.16 10.16 -40.61 -0.41 -1.57 16 25 C -0.17 -1.46 11.08 28.81 0.32 -1.14 16 26 S 0.12 1.34 23.29 -107.50 -2.50 -1.16 16 27 C -0.20 -2.77 6.49 -38.47 -0.25 -3.02 16 28 C 0.02 0.30 9.75 -38.65 -0.38 -0.08 16 29 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 30 H 0.36 8.94 5.42 -40.82 -0.22 8.72 16 31 H 0.03 0.55 8.02 -51.93 -0.42 0.14 16 32 H 0.05 1.10 5.95 -51.93 -0.31 0.79 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.56 7.63 -51.93 -0.40 0.16 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.98 3.47 -51.97 -0.18 0.80 16 41 H 0.18 1.79 4.86 -52.49 -0.26 1.54 16 42 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.15 2.50 8.00 -52.48 -0.42 2.08 16 LS Contribution 357.89 15.07 5.39 5.39 Total: -1.00 -36.21 357.89 -10.45 -46.66 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.59 Total: 5.86 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -3.06 Total: -1.68 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: -0.03 Total: -64.08 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.06 Total: -9.82 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -4.71 Total: 18.83 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.50 Total: -1.16 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.21 -10.45 -46.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570513004.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.543 kcal (2) G-P(sol) polarization free energy of solvation -36.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds