Wall clock time and date at job start Wed Apr 1 2020 02:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86810 * 119.99465 * 2 1 4 4 H 1.48501 * 109.47107 * 269.99634 * 3 2 1 5 5 H 1.48497 * 109.47088 * 29.99907 * 3 2 1 6 6 H 1.48503 * 109.46861 * 149.99849 * 3 2 1 7 7 C 1.38808 * 120.00583 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00082 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00300 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00174 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47034 * 174.70281 * 10 9 7 12 12 H 1.08997 * 109.69872 * 318.15887 * 11 10 9 13 13 C 1.53192 * 109.58424 * 197.80553 * 11 10 9 14 14 C 1.53043 * 109.31330 * 185.57726 * 13 11 10 15 15 C 1.53044 * 109.53629 * 61.36077 * 14 13 11 16 16 C 1.53187 * 109.31292 * 298.63806 * 15 14 13 17 17 N 1.46924 * 108.77937 * 54.63670 * 16 15 14 18 18 C 1.34777 * 120.63137 * 126.11666 * 17 16 15 19 19 O 1.21589 * 119.99978 * 173.54668 * 18 17 16 20 20 C 1.47560 * 120.00203 * 353.54328 * 18 17 16 21 21 C 1.40114 * 120.58651 * 327.84017 * 20 18 17 22 22 N 1.30617 * 121.17173 * 179.71170 * 21 20 18 23 23 C 1.34914 * 122.44218 * 0.55334 * 22 21 20 24 24 C 1.40619 * 128.45621 * 179.71354 * 23 22 21 25 25 C 1.32275 * 115.91089 * 180.02562 * 24 23 22 26 26 S 1.75509 * 110.83692 * 0.02562 * 25 24 23 27 27 C 1.40091 * 119.27294 * 359.74152 * 23 22 21 28 28 C 1.39362 * 119.75340 * 359.97273 * 27 23 22 29 29 H 0.96997 * 120.01076 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99841 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47084 * 54.70060 * 10 9 7 32 32 H 1.09004 * 109.46773 * 294.69886 * 10 9 7 33 33 H 1.08998 * 109.49881 * 65.62466 * 13 11 10 34 34 H 1.09006 * 109.52214 * 305.54077 * 13 11 10 35 35 H 1.08996 * 109.45599 * 301.34743 * 14 13 11 36 36 H 1.08993 * 109.45892 * 181.38691 * 14 13 11 37 37 H 1.08997 * 109.49145 * 178.68645 * 15 14 13 38 38 H 1.09003 * 109.49240 * 58.58840 * 15 14 13 39 39 H 1.09005 * 109.58669 * 294.84594 * 16 15 14 40 40 H 1.09000 * 109.70377 * 174.49363 * 16 15 14 41 41 H 1.07997 * 119.41624 * 359.97438 * 21 20 18 42 42 H 1.07998 * 122.04513 * 0.02562 * 24 23 22 43 43 H 1.08002 * 124.58437 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.73344 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1123 -2.4706 0.0011 11 6 5.6113 -2.1940 -0.1315 12 1 5.7760 -1.4079 -0.8683 13 6 6.3321 -3.4714 -0.5733 14 6 7.8429 -3.2272 -0.5696 15 6 8.3016 -2.8795 0.8485 16 6 7.6031 -1.5954 1.3064 17 7 6.1510 -1.7718 1.1682 18 6 5.3303 -1.5559 2.2152 19 8 4.1248 -1.5902 2.0600 20 6 5.8946 -1.2778 3.5500 21 6 7.1119 -1.8499 3.9427 22 7 7.6246 -1.6071 5.1193 23 6 7.0176 -0.8100 6.0228 24 6 7.4486 -0.4687 7.3171 25 6 6.6523 0.3396 7.9970 26 16 5.2376 0.7648 7.0494 27 6 5.7943 -0.2110 5.6953 28 6 5.2223 -0.4444 4.4461 29 1 -0.4851 0.8399 -0.0004 30 1 3.8646 -0.3619 0.0007 31 1 3.7801 -3.0820 -0.8379 32 1 3.9217 -3.0002 0.9346 33 1 6.0098 -3.7418 -1.5789 34 1 6.0929 -4.2816 0.1156 35 1 8.0788 -2.4010 -1.2403 36 1 8.3570 -4.1270 -0.9073 37 1 9.3811 -2.7286 0.8548 38 1 8.0437 -3.6948 1.5244 39 1 7.9303 -0.7604 0.6867 40 1 7.8491 -1.3949 2.3491 41 1 7.6376 -2.4997 3.2589 42 1 8.3731 -0.8435 7.7306 43 1 6.8461 0.6898 9.0001 44 1 4.2796 0.0089 4.1772 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570513004.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:28 Heat of formation + Delta-G solvation = 70.149313 kcal Electronic energy + Delta-G solvation = -28522.900329 eV Core-core repulsion = 24761.326706 eV Total energy + Delta-G solvation = -3761.573623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.25771 -40.92204 -38.37147 -37.18947 -36.29433 -34.09449 -33.77647 -33.61720 -32.11693 -30.73619 -28.10588 -26.40542 -25.43632 -25.22831 -24.09228 -23.03345 -22.38524 -21.70897 -20.62209 -19.79939 -18.84205 -18.09958 -17.96534 -17.25206 -17.06246 -16.61000 -16.04053 -15.89640 -15.63588 -15.48667 -15.10801 -15.05701 -14.84151 -14.67245 -14.42879 -14.30026 -14.13884 -13.79674 -13.65416 -13.41909 -13.39113 -12.95986 -12.84493 -12.58881 -12.26577 -12.10480 -12.01132 -11.86497 -11.76286 -11.65271 -11.49721 -11.35970 -11.01374 -10.84438 -10.13782 -9.86542 -9.54595 -9.13116 -9.02195 -7.97788 -5.21788 -0.92622 -0.20150 0.25089 0.81157 0.87919 1.27461 1.32776 1.39626 1.82440 1.93059 2.48628 2.56714 2.93596 3.30201 3.33458 3.46534 3.56916 3.65600 3.80277 3.92106 3.94253 4.05173 4.06963 4.27430 4.29891 4.33713 4.39918 4.57920 4.61332 4.69187 4.70983 4.83154 4.87808 4.98950 5.03195 5.03769 5.12523 5.14885 5.25366 5.27119 5.30793 5.51445 5.72954 5.78034 6.25619 6.40696 6.53937 7.13941 7.25287 7.93817 8.12443 9.25890 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008920 B = 0.004671 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.117176 B = 5992.538981 C = 8571.499881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.993 5.993 2 C -0.073 4.073 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.271 1.271 7 C -0.197 4.197 8 H 0.047 0.953 9 N -0.726 5.726 10 C 0.160 3.840 11 C 0.145 3.855 12 H 0.072 0.928 13 C -0.120 4.120 14 C -0.112 4.112 15 C -0.131 4.131 16 C 0.075 3.925 17 N -0.602 5.602 18 C 0.529 3.471 19 O -0.509 6.509 20 C -0.181 4.181 21 C 0.153 3.847 22 N -0.467 5.467 23 C 0.132 3.868 24 C -0.134 4.134 25 C -0.138 4.138 26 S 0.120 5.880 27 C -0.229 4.229 28 C 0.005 3.995 29 H 0.253 0.747 30 H 0.357 0.643 31 H 0.024 0.976 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.206 0.794 42 H 0.181 0.819 43 H 0.220 0.780 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.329 -2.848 12.552 30.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.647 5.647 2 C -0.263 4.263 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.197 1.197 7 C -0.329 4.329 8 H 0.065 0.935 9 N -0.370 5.370 10 C 0.034 3.966 11 C 0.042 3.958 12 H 0.090 0.910 13 C -0.159 4.159 14 C -0.150 4.150 15 C -0.169 4.169 16 C -0.046 4.046 17 N -0.337 5.337 18 C 0.315 3.685 19 O -0.384 6.384 20 C -0.190 4.190 21 C -0.018 4.018 22 N -0.175 5.175 23 C -0.003 4.003 24 C -0.163 4.163 25 C -0.275 4.275 26 S 0.383 5.617 27 C -0.346 4.346 28 C -0.025 4.025 29 H 0.062 0.938 30 H 0.189 0.811 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.222 0.778 42 H 0.198 0.802 43 H 0.237 0.763 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 26.041 -2.388 13.112 29.254 hybrid contribution -0.416 0.698 -0.648 1.039 sum 25.626 -1.690 12.464 28.546 Atomic orbital electron populations 1.69879 1.06878 1.26028 1.61879 1.25319 0.96010 1.00625 1.04319 0.85383 0.77880 0.80373 0.77923 1.19982 1.22491 1.19699 1.18981 0.83070 0.92891 1.37916 0.93468 1.42475 1.01971 1.03377 1.89155 1.20999 0.89606 0.88377 0.97615 1.21502 0.92442 0.97966 0.83897 0.91018 1.21896 0.96685 0.95042 1.02286 1.21497 0.93411 1.03033 0.97025 1.21971 1.01507 0.96184 0.97248 1.22666 0.77707 1.00034 1.04192 1.47957 1.07985 1.67925 1.09798 1.18412 0.86671 0.78948 0.84481 1.91238 1.15202 1.48279 1.83690 1.20980 0.98835 1.03160 0.95998 1.23555 0.90166 0.95873 0.92239 1.67711 1.33541 1.14228 1.02043 1.19793 0.90334 0.94450 0.95677 1.19870 1.03876 1.01505 0.91064 1.25939 0.95596 1.00675 1.05275 1.84577 1.24290 1.48480 1.04354 1.23688 1.02133 1.08073 1.00704 1.20946 0.97718 0.93518 0.90304 0.93787 0.81109 0.95797 0.95380 0.89778 0.91599 0.91158 0.89369 0.87470 0.90965 0.90338 0.87746 0.77783 0.80227 0.76285 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -68.74 13.97 21.65 0.30 -68.44 16 2 C -0.07 -4.72 5.50 84.86 0.47 -4.25 16 3 Si 0.96 50.80 27.74 68.60 1.90 52.70 16 4 H -0.27 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.30 -15.89 7.11 99.48 0.71 -15.18 16 6 H -0.27 -13.76 6.52 99.48 0.65 -13.11 16 7 C -0.20 -12.45 10.35 84.03 0.87 -11.59 16 8 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 9 N -0.73 -38.10 3.22 -343.44 -1.11 -39.20 16 10 C 0.16 6.81 4.93 86.38 0.43 7.23 16 11 C 0.14 4.35 2.90 44.98 0.13 4.48 16 12 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 13 C -0.12 -2.50 5.29 30.67 0.16 -2.34 16 14 C -0.11 -1.51 5.88 30.62 0.18 -1.33 16 15 C -0.13 -1.56 5.72 30.67 0.18 -1.38 16 16 C 0.08 1.34 5.53 86.36 0.48 1.82 16 17 N -0.60 -16.95 2.97 -798.74 -2.37 -19.33 16 18 C 0.53 19.00 7.16 86.70 0.62 19.62 16 19 O -0.51 -24.35 10.99 -4.00 -0.04 -24.40 16 20 C -0.18 -5.54 5.48 -20.03 -0.11 -5.65 16 21 C 0.15 3.61 8.59 85.33 0.73 4.34 16 22 N -0.47 -11.25 10.39 -188.79 -1.96 -13.21 16 23 C 0.13 3.14 6.97 39.70 0.28 3.42 16 24 C -0.13 -2.15 10.16 21.79 0.22 -1.93 16 25 C -0.14 -1.77 11.08 66.76 0.74 -1.03 16 26 S 0.12 2.41 23.29 -56.49 -1.32 1.10 16 27 C -0.23 -6.16 6.49 22.99 0.15 -6.01 16 28 C 0.01 0.17 9.75 22.88 0.22 0.39 16 29 H 0.25 16.69 8.31 -92.71 -0.77 15.91 16 30 H 0.36 18.34 5.42 -92.71 -0.50 17.84 16 31 H 0.02 1.02 8.02 -2.39 -0.02 1.00 16 32 H 0.03 1.35 5.95 -2.43 -0.01 1.33 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 0.86 7.63 -2.39 -0.02 0.84 16 39 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.11 1.77 3.47 -2.42 -0.01 1.76 16 41 H 0.21 3.53 4.86 -2.91 -0.01 3.52 16 42 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.22 0.87 8.06 -2.91 -0.02 0.85 16 44 H 0.13 4.59 8.00 -2.91 -0.02 4.57 16 Total: -1.00 -86.29 357.89 1.63 -84.66 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.48 Total: 20.32 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 5.74 Total: 5.79 kcal Atomic # 7 Polarization: -135.04 SS G_CDS: -5.14 Total: -140.18 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.04 Total: -24.40 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 1.90 Total: 52.70 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.32 Total: 1.10 kcal Total: -86.29 1.63 -84.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570513004.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.814 kcal (2) G-P(sol) polarization free energy of solvation -86.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds