Wall clock time and date at job start Wed Apr 1 2020 03:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38904 * 119.47970 * 2 1 4 4 C 1.36807 * 120.30435 * 180.27642 * 3 2 1 5 5 C 1.38697 * 119.62938 * 359.97438 * 4 3 2 6 6 S 1.76256 * 134.18682 * 180.02562 * 5 4 3 7 7 N 1.55998 * 97.56141 * 180.02562 * 6 5 4 8 8 C 1.29678 * 111.74353 * 359.97438 * 7 6 5 9 9 C 1.47383 * 121.82714 * 180.02562 * 8 7 6 10 10 O 1.21621 * 119.99595 * 179.97438 * 9 8 7 11 11 N 1.34767 * 120.00300 * 359.97438 * 9 8 7 12 12 C 1.46506 * 120.00319 * 179.97438 * 11 9 8 13 13 C 1.53775 * 113.61528 * 254.13363 * 12 11 9 14 14 C 1.54050 * 86.98861 * 270.83851 * 13 12 11 15 15 C 1.52998 * 113.61813 * 220.02083 * 14 13 12 16 16 N 1.46495 * 109.47503 * 272.49454 * 15 14 13 17 17 C 1.36932 * 120.00314 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99842 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00257 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00173 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46952 * 60.00251 * 21 19 17 23 23 H 1.48502 * 109.47271 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47210 * 300.00017 * 21 19 17 25 25 C 1.53780 * 113.61117 * 156.52481 * 12 11 9 26 26 C 1.40673 * 120.66618 * 0.02562 * 5 4 3 27 27 C 1.36335 * 119.48326 * 180.26951 * 2 1 3 28 28 H 1.08991 * 109.47227 * 269.72989 * 1 2 3 29 29 H 1.09004 * 109.46832 * 29.73267 * 1 2 3 30 30 H 1.08996 * 109.46849 * 149.72831 * 1 2 3 31 31 H 1.07995 * 119.85058 * 0.27070 * 3 2 1 32 32 H 1.07999 * 120.18391 * 180.02562 * 4 3 2 33 33 H 0.97004 * 119.99841 * 359.97438 * 11 9 8 34 34 H 1.08996 * 112.84406 * 25.33632 * 12 11 9 35 35 H 1.09006 * 113.61580 * 25.43483 * 13 12 11 36 36 H 1.09005 * 113.61350 * 156.33205 * 13 12 11 37 37 H 1.08996 * 113.68514 * 89.12604 * 14 13 12 38 38 H 1.09005 * 109.47326 * 32.49699 * 15 14 13 39 39 H 1.09004 * 109.46654 * 152.48991 * 15 14 13 40 40 H 0.97008 * 119.99819 * 359.97438 * 16 15 14 41 41 H 0.96999 * 120.00402 * 180.02562 * 20 19 17 42 42 H 1.09005 * 113.60907 * 203.66574 * 25 12 11 43 43 H 1.08988 * 113.62120 * 334.48821 * 25 12 11 44 44 H 1.08004 * 120.01843 * 359.70529 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2092 0.0000 4 6 3.5585 1.2289 -0.0057 5 6 4.2615 0.0333 -0.0109 6 16 5.9736 -0.3851 -0.0184 7 7 5.8059 -1.9361 -0.0218 8 6 4.5568 -2.2842 -0.0175 9 6 4.1442 -3.6991 -0.0190 10 8 2.9628 -3.9880 -0.0144 11 7 5.0760 -4.6727 -0.0254 12 6 4.6659 -6.0792 -0.0263 13 6 4.8698 -6.7812 1.3267 14 6 6.2857 -7.1384 0.8360 15 6 6.7280 -8.5525 1.2176 16 7 7.3470 -8.5291 2.5451 17 6 7.8232 -9.6872 3.0991 18 1 7.7422 -10.6181 2.5574 19 6 8.4102 -9.6649 4.3568 20 7 8.5085 -8.5306 5.0171 21 14 9.0593 -11.2450 5.1128 22 1 10.1121 -11.8173 4.2357 23 1 9.6346 -10.9538 6.4505 24 1 7.9478 -12.2197 5.2529 25 6 5.7316 -7.0312 -0.5946 26 6 3.5821 -1.1985 -0.0110 27 6 2.1780 -1.1868 -0.0056 28 1 -0.3633 -0.0048 1.0276 29 1 -0.3633 0.8924 -0.5097 30 1 -0.3633 -0.8875 -0.5180 31 1 1.6397 2.1381 0.0044 32 1 4.0880 2.1702 -0.0053 33 1 6.0182 -4.4423 -0.0294 34 1 3.6739 -6.2305 -0.4517 35 1 4.8599 -6.1002 2.1778 36 1 4.2254 -7.6487 1.4699 37 1 7.0345 -6.3825 1.0719 38 1 5.8609 -9.2129 1.2326 39 1 7.4497 -8.9171 0.4865 40 1 7.4201 -7.6929 3.0315 41 1 8.9190 -8.5149 5.8958 42 1 5.3225 -7.9669 -0.9757 43 1 6.4161 -6.5524 -1.2946 44 1 1.6299 -2.1174 -0.0051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570569707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:15 Heat of formation + Delta-G solvation = 46.988279 kcal Electronic energy + Delta-G solvation = -26245.976137 eV Core-core repulsion = 22483.398176 eV Total energy + Delta-G solvation = -3762.577960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.97829 -39.85149 -38.37369 -37.29443 -34.54100 -33.25524 -32.85781 -31.19093 -30.79798 -27.54317 -27.20102 -25.99733 -25.49053 -23.70291 -23.09086 -21.89586 -21.35136 -20.58633 -19.11499 -18.79549 -17.83754 -17.01274 -16.62389 -15.90193 -15.74011 -15.70718 -14.96936 -14.77679 -14.54984 -14.46181 -14.19443 -14.00926 -13.77632 -13.67343 -13.29754 -12.75266 -12.67067 -12.41768 -12.34018 -12.20548 -12.11470 -12.02506 -11.64556 -11.52512 -11.05082 -11.01310 -10.79272 -10.46809 -10.35131 -10.09669 -10.08423 -10.07351 -9.81021 -9.58663 -9.33715 -9.06322 -8.81307 -8.19477 -6.86936 -5.72440 -3.00689 -0.00642 0.68041 0.96914 1.29923 1.41560 2.83975 2.90789 3.27677 3.46439 3.50358 3.51731 3.91810 4.26121 4.40530 4.60712 4.64503 4.70297 4.76555 4.83827 4.92046 5.00604 5.12825 5.15691 5.18650 5.25160 5.49965 5.60403 5.61272 5.63791 5.70317 5.73979 5.86794 5.94012 5.95356 6.02966 6.13464 6.14863 6.25231 6.32218 6.41884 6.45067 6.62755 6.81786 6.96520 7.37425 7.72701 7.98986 8.46694 9.57389 10.17049 10.51423 11.50489 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.002007 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.442556 B =13947.519833 C =14406.197992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.069 4.069 5 C -0.207 4.207 6 S 0.394 5.606 7 N -0.486 5.486 8 C 0.089 3.911 9 C 0.592 3.408 10 O -0.527 6.527 11 N -0.687 5.687 12 C 0.114 3.886 13 C -0.138 4.138 14 C -0.114 4.114 15 C 0.163 3.837 16 N -0.732 5.732 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.137 4.137 26 C -0.082 4.082 27 C -0.044 4.044 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.410 0.590 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.021 0.979 39 H 0.018 0.982 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.713 23.746 -14.979 31.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.112 4.112 4 C -0.091 4.091 5 C -0.328 4.328 6 S 0.554 5.446 7 N -0.313 5.313 8 C -0.099 4.099 9 C 0.373 3.627 10 O -0.402 6.402 11 N -0.338 5.338 12 C 0.009 3.991 13 C -0.176 4.176 14 C -0.133 4.133 15 C 0.035 3.965 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.212 4.212 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.175 4.175 26 C -0.093 4.093 27 C -0.067 4.067 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.246 0.754 34 H 0.120 0.880 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.115 0.885 43 H 0.088 0.912 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.185 23.500 -14.958 30.405 hybrid contribution -0.657 -0.876 0.773 1.340 sum -12.842 22.624 -14.185 29.631 Atomic orbital electron populations 1.20846 0.90253 1.03252 1.02878 1.19676 0.96870 0.92571 0.99563 1.20967 0.93648 0.98012 0.98555 1.19912 0.93780 0.95257 1.00190 1.24280 1.01677 0.97796 1.09066 1.81456 1.02213 0.94368 1.66588 1.71403 1.23616 1.17181 1.19085 1.21865 0.86562 0.95855 1.05629 1.17093 0.85748 0.82831 0.76990 1.90772 1.16678 1.82525 1.50232 1.45536 1.10055 1.05426 1.72765 1.22033 0.99351 0.78931 0.98745 1.23462 0.97476 1.00355 0.96322 1.22818 0.96416 0.99550 0.94467 1.20634 0.95174 0.92251 0.88428 1.42346 1.71021 1.08682 1.15531 1.19202 1.30911 0.87906 0.98973 0.91284 1.24748 1.02021 0.96947 0.97458 1.69653 1.50134 1.24376 1.14161 0.86258 0.78697 0.82831 0.78351 1.21315 1.21722 1.21292 1.23306 0.97580 0.99282 0.97379 1.19541 0.95133 0.89826 1.04773 1.20687 0.90765 0.99189 0.96018 0.90695 0.91224 0.90978 0.84761 0.84719 0.75385 0.87998 0.91251 0.88882 0.89395 0.96170 0.96400 0.78330 0.93522 0.88478 0.91169 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.98 36.01 0.36 -0.28 16 2 C -0.08 -0.68 5.84 -105.06 -0.61 -1.30 16 3 C -0.09 -0.60 9.63 -39.85 -0.38 -0.98 16 4 C -0.07 -0.51 10.03 -39.93 -0.40 -0.91 16 5 C -0.21 -2.04 6.73 -38.49 -0.26 -2.30 16 6 S 0.39 3.73 23.36 -107.50 -2.51 1.22 16 7 N -0.49 -5.96 10.49 28.23 0.30 -5.66 16 8 C 0.09 1.16 6.82 -81.99 -0.56 0.60 16 9 C 0.59 8.43 7.81 -12.54 -0.10 8.33 16 10 O -0.53 -8.38 14.63 5.26 0.08 -8.30 16 11 N -0.69 -9.08 5.26 -54.11 -0.28 -9.36 16 12 C 0.11 1.51 4.30 -67.12 -0.29 1.22 16 13 C -0.14 -2.12 7.45 -25.78 -0.19 -2.31 16 14 C -0.11 -1.84 3.65 -89.66 -0.33 -2.16 16 15 C 0.16 3.31 6.10 -4.05 -0.02 3.28 16 16 N -0.73 -19.02 5.60 -59.91 -0.34 -19.36 16 17 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 18 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 19 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 20 N -0.93 -28.92 13.06 55.49 0.72 -28.20 16 21 Si 0.91 22.86 29.55 -169.99 -5.02 17.83 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C -0.14 -1.72 7.38 -25.92 -0.19 -1.91 16 26 C -0.08 -0.98 6.10 -105.09 -0.64 -1.62 16 27 C -0.04 -0.47 9.17 -39.45 -0.36 -0.84 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 30 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 31 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.41 5.12 8.14 -40.82 -0.33 4.79 16 34 H 0.10 1.35 7.50 -51.93 -0.39 0.96 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.42 7.90 -51.93 -0.41 1.01 16 37 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.02 0.41 7.85 -51.93 -0.41 0.01 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.38 10.51 7.67 -40.82 -0.31 10.20 16 41 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 43 H 0.07 0.81 8.14 -51.94 -0.42 0.39 16 44 H 0.15 1.67 6.64 -52.48 -0.35 1.32 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -33.65 382.64 -11.48 -45.13 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -5.97 Total: 9.67 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -4.23 Total: -8.74 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: 0.40 Total: -62.58 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.08 Total: -8.30 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -2.51 Total: 1.22 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.65 -11.48 -45.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570569707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.118 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds