Wall clock time and date at job start Wed Apr 1 2020 03:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38904 * 119.47970 * 2 1 4 4 C 1.36807 * 120.30435 * 180.27642 * 3 2 1 5 5 C 1.38697 * 119.62938 * 359.97438 * 4 3 2 6 6 S 1.76256 * 134.18682 * 180.02562 * 5 4 3 7 7 N 1.55998 * 97.56141 * 180.02562 * 6 5 4 8 8 C 1.29678 * 111.74353 * 359.97438 * 7 6 5 9 9 C 1.47383 * 121.82714 * 180.02562 * 8 7 6 10 10 O 1.21621 * 119.99595 * 179.97438 * 9 8 7 11 11 N 1.34767 * 120.00300 * 359.97438 * 9 8 7 12 12 C 1.46506 * 120.00319 * 179.97438 * 11 9 8 13 13 C 1.53775 * 113.61528 * 254.13363 * 12 11 9 14 14 C 1.54050 * 86.98861 * 270.83851 * 13 12 11 15 15 C 1.52998 * 113.61813 * 220.02083 * 14 13 12 16 16 N 1.46495 * 109.47503 * 272.49454 * 15 14 13 17 17 C 1.36932 * 120.00314 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99842 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00257 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00173 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46952 * 60.00251 * 21 19 17 23 23 H 1.48502 * 109.47271 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47210 * 300.00017 * 21 19 17 25 25 C 1.53780 * 113.61117 * 156.52481 * 12 11 9 26 26 C 1.40673 * 120.66618 * 0.02562 * 5 4 3 27 27 C 1.36335 * 119.48326 * 180.26951 * 2 1 3 28 28 H 1.08991 * 109.47227 * 269.72989 * 1 2 3 29 29 H 1.09004 * 109.46832 * 29.73267 * 1 2 3 30 30 H 1.08996 * 109.46849 * 149.72831 * 1 2 3 31 31 H 1.07995 * 119.85058 * 0.27070 * 3 2 1 32 32 H 1.07999 * 120.18391 * 180.02562 * 4 3 2 33 33 H 0.97004 * 119.99841 * 359.97438 * 11 9 8 34 34 H 1.08996 * 112.84406 * 25.33632 * 12 11 9 35 35 H 1.09006 * 113.61580 * 25.43483 * 13 12 11 36 36 H 1.09005 * 113.61350 * 156.33205 * 13 12 11 37 37 H 1.08996 * 113.68514 * 89.12604 * 14 13 12 38 38 H 1.09005 * 109.47326 * 32.49699 * 15 14 13 39 39 H 1.09004 * 109.46654 * 152.48991 * 15 14 13 40 40 H 0.97008 * 119.99819 * 359.97438 * 16 15 14 41 41 H 0.96999 * 120.00402 * 180.02562 * 20 19 17 42 42 H 1.09005 * 113.60907 * 203.66574 * 25 12 11 43 43 H 1.08988 * 113.62120 * 334.48821 * 25 12 11 44 44 H 1.08004 * 120.01843 * 359.70529 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2092 0.0000 4 6 3.5585 1.2289 -0.0057 5 6 4.2615 0.0333 -0.0109 6 16 5.9736 -0.3851 -0.0184 7 7 5.8059 -1.9361 -0.0218 8 6 4.5568 -2.2842 -0.0175 9 6 4.1442 -3.6991 -0.0190 10 8 2.9628 -3.9880 -0.0144 11 7 5.0760 -4.6727 -0.0254 12 6 4.6659 -6.0792 -0.0263 13 6 4.8698 -6.7812 1.3267 14 6 6.2857 -7.1384 0.8360 15 6 6.7280 -8.5525 1.2176 16 7 7.3470 -8.5291 2.5451 17 6 7.8232 -9.6872 3.0991 18 1 7.7422 -10.6181 2.5574 19 6 8.4102 -9.6649 4.3568 20 7 8.5085 -8.5306 5.0171 21 14 9.0593 -11.2450 5.1128 22 1 10.1121 -11.8173 4.2357 23 1 9.6346 -10.9538 6.4505 24 1 7.9478 -12.2197 5.2529 25 6 5.7316 -7.0312 -0.5946 26 6 3.5821 -1.1985 -0.0110 27 6 2.1780 -1.1868 -0.0056 28 1 -0.3633 -0.0048 1.0276 29 1 -0.3633 0.8924 -0.5097 30 1 -0.3633 -0.8875 -0.5180 31 1 1.6397 2.1381 0.0044 32 1 4.0880 2.1702 -0.0053 33 1 6.0182 -4.4423 -0.0294 34 1 3.6739 -6.2305 -0.4517 35 1 4.8599 -6.1002 2.1778 36 1 4.2254 -7.6487 1.4699 37 1 7.0345 -6.3825 1.0719 38 1 5.8609 -9.2129 1.2326 39 1 7.4497 -8.9171 0.4865 40 1 7.4201 -7.6929 3.0315 41 1 8.9190 -8.5149 5.8958 42 1 5.3225 -7.9669 -0.9757 43 1 6.4161 -6.5524 -1.2946 44 1 1.6299 -2.1174 -0.0051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570569707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:14 Heat of formation + Delta-G solvation = 25.701115 kcal Electronic energy + Delta-G solvation = -26246.899218 eV Core-core repulsion = 22483.398176 eV Total energy + Delta-G solvation = -3763.501041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.88176 -40.82852 -39.44584 -38.16680 -36.37485 -34.53365 -33.55681 -32.79491 -31.85429 -28.83398 -27.99866 -27.18949 -26.67946 -25.21676 -24.14013 -22.98865 -22.53583 -21.52293 -20.36963 -19.63423 -19.07055 -18.71484 -17.41803 -16.98749 -16.73789 -16.64054 -16.40954 -15.97121 -15.76369 -15.43034 -15.32001 -15.12057 -15.00041 -14.71636 -14.50747 -14.33517 -13.75218 -13.41597 -13.16768 -13.13293 -13.02157 -12.93309 -12.82144 -12.69185 -12.61647 -12.40943 -12.24503 -11.94429 -11.79442 -11.75112 -11.41301 -11.20205 -11.11590 -10.87262 -10.80206 -10.18916 -9.98618 -8.99789 -8.91458 -7.95994 -5.24866 -0.82592 -0.01263 0.24420 0.52467 0.59394 1.45329 1.49164 1.55219 1.85944 1.92118 2.55132 2.56456 3.14734 3.36405 3.48091 3.52545 3.56869 3.80533 3.88546 3.90602 3.92654 4.19747 4.30332 4.32885 4.36616 4.51139 4.68596 4.71149 4.76868 4.81159 4.82068 4.86114 4.88483 4.94601 4.98029 5.09839 5.12379 5.17255 5.22159 5.27214 5.31359 5.46867 5.54052 5.60440 5.82672 6.26183 6.31296 6.92481 7.31747 8.09721 8.32052 9.27591 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.002007 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.442556 B =13947.519833 C =14406.197992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.082 4.082 4 C -0.066 4.066 5 C -0.220 4.220 6 S 0.439 5.561 7 N -0.509 5.509 8 C 0.063 3.937 9 C 0.589 3.411 10 O -0.552 6.552 11 N -0.685 5.685 12 C 0.124 3.876 13 C -0.140 4.140 14 C -0.113 4.113 15 C 0.161 3.839 16 N -0.746 5.746 17 C -0.246 4.246 18 H 0.077 0.923 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.977 3.023 22 H -0.276 1.276 23 H -0.295 1.295 24 H -0.277 1.277 25 C -0.114 4.114 26 C -0.107 4.107 27 C -0.074 4.074 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.174 0.826 32 H 0.169 0.831 33 H 0.413 0.587 34 H 0.106 0.894 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.025 0.975 39 H 0.022 0.978 40 H 0.371 0.629 41 H 0.251 0.749 42 H 0.115 0.885 43 H 0.087 0.913 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.277 25.364 -16.261 33.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.081 4.081 3 C -0.105 4.105 4 C -0.088 4.088 5 C -0.341 4.341 6 S 0.600 5.400 7 N -0.337 5.337 8 C -0.124 4.124 9 C 0.371 3.629 10 O -0.429 6.429 11 N -0.335 5.335 12 C 0.019 3.981 13 C -0.179 4.179 14 C -0.132 4.132 15 C 0.035 3.965 16 N -0.389 5.389 17 C -0.378 4.378 18 H 0.095 0.905 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.805 3.195 22 H -0.202 1.202 23 H -0.222 1.222 24 H -0.203 1.203 25 C -0.153 4.153 26 C -0.117 4.117 27 C -0.096 4.096 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.191 0.809 32 H 0.187 0.813 33 H 0.250 0.750 34 H 0.124 0.876 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.043 0.957 39 H 0.040 0.960 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.134 0.866 43 H 0.106 0.894 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.755 25.104 -16.288 32.530 hybrid contribution -0.528 -1.249 1.139 1.771 sum -13.283 23.854 -15.150 31.225 Atomic orbital electron populations 1.20921 0.88506 1.04228 1.03562 1.20038 0.98224 0.92242 0.97633 1.21432 0.93632 0.98795 0.96647 1.20422 0.94278 0.95547 0.98503 1.24538 1.01694 0.98111 1.09779 1.81123 1.01763 0.92301 1.64821 1.71183 1.23679 1.19565 1.19300 1.21758 0.87232 0.95453 1.07918 1.17381 0.85491 0.83685 0.76359 1.90742 1.17590 1.83141 1.51460 1.45534 1.10157 1.05326 1.72510 1.21916 0.99966 0.79075 0.97143 1.23469 0.97234 1.00343 0.96851 1.22727 0.96288 0.96728 0.97461 1.20824 0.94840 0.94957 0.85906 1.42595 1.71363 1.07503 1.17396 1.19650 1.30004 0.88979 0.99179 0.90542 1.25632 1.03097 1.00268 0.98233 1.69825 1.51546 1.26589 1.14324 0.85163 0.78267 0.78970 0.77082 1.20228 1.22170 1.20315 1.23231 0.96879 0.99890 0.95259 1.19685 0.95659 0.90313 1.06068 1.20693 0.90587 0.99740 0.98585 0.90012 0.88788 0.91517 0.80904 0.81334 0.75005 0.87592 0.93415 0.88766 0.90422 0.95717 0.95978 0.79721 0.94055 0.86644 0.89403 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.98 71.24 0.71 -0.36 16 2 C -0.08 -1.18 5.84 -20.15 -0.12 -1.29 16 3 C -0.08 -0.84 9.63 22.09 0.21 -0.63 16 4 C -0.07 -0.78 10.03 22.04 0.22 -0.56 16 5 C -0.22 -4.10 6.73 22.97 0.15 -3.95 16 6 S 0.44 7.97 23.36 -56.49 -1.32 6.65 16 7 N -0.51 -12.71 10.49 -64.58 -0.68 -13.39 16 8 C 0.06 1.73 6.82 43.86 0.30 2.03 16 9 C 0.59 17.63 7.81 86.65 0.68 18.30 16 10 O -0.55 -18.61 14.63 -4.10 -0.06 -18.67 16 11 N -0.68 -18.62 5.26 -443.34 -2.33 -20.95 16 12 C 0.12 3.28 4.30 45.51 0.20 3.47 16 13 C -0.14 -4.43 7.45 31.21 0.23 -4.19 16 14 C -0.11 -3.66 3.65 -10.17 -0.04 -3.70 16 15 C 0.16 6.52 6.10 86.38 0.53 7.04 16 16 N -0.75 -39.43 5.60 -343.46 -1.92 -41.36 16 17 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 18 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 19 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 20 N -0.97 -61.45 13.06 21.65 0.28 -61.16 16 21 Si 0.98 47.27 29.55 68.60 2.03 49.30 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 25 C -0.11 -2.71 7.38 31.12 0.23 -2.48 16 26 C -0.11 -2.61 6.10 -20.17 -0.12 -2.73 16 27 C -0.07 -1.62 9.17 22.35 0.21 -1.42 16 28 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 0.42 8.07 -2.39 -0.02 0.40 16 30 H 0.07 0.70 8.07 -2.39 -0.02 0.68 16 31 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 32 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16 33 H 0.41 10.60 8.14 -92.71 -0.76 9.85 16 34 H 0.11 2.78 7.50 -2.39 -0.02 2.77 16 35 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.09 2.93 7.90 -2.38 -0.02 2.91 16 37 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.02 0.99 7.85 -2.38 -0.02 0.98 16 39 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.37 21.05 7.67 -92.70 -0.71 20.34 16 41 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.12 2.38 8.10 -2.38 -0.02 2.36 16 43 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 44 H 0.13 3.22 6.64 -2.91 -0.02 3.20 16 Total: -1.00 -74.82 382.64 0.28 -74.54 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.42 Total: 33.16 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 4.69 Total: -8.13 kcal Atomic # 7 Polarization: -132.20 SS G_CDS: -4.65 Total: -136.85 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.06 Total: -18.67 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Atomic # 16 Polarization: 7.97 SS G_CDS: -1.32 Total: 6.65 kcal Total: -74.82 0.28 -74.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570569707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.241 kcal (2) G-P(sol) polarization free energy of solvation -74.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds