Wall clock time and date at job start Wed Apr 1 2020 03:17:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.38215 * 119.90304 * 2 1
4 4 C 1.38916 * 120.16920 * 180.02562 * 3 2 1
5 5 N 1.39958 * 120.01330 * 179.71688 * 4 3 2
6 6 C 1.34778 * 119.99763 * 144.91578 * 5 4 3
7 7 O 1.21587 * 119.99921 * 4.63511 * 6 5 4
8 8 N 1.34779 * 120.00207 * 184.62754 * 6 5 4
9 9 C 1.46497 * 120.00139 * 180.02562 * 8 6 5
10 10 C 1.50703 * 109.47119 * 180.02562 * 9 8 6
11 11 O 1.21285 * 119.99812 * 0.02562 * 10 9 8
12 12 N 1.34775 * 119.99984 * 179.97438 * 10 9 8
13 13 C 1.37096 * 120.00115 * 180.02562 * 12 10 9
14 14 H 1.08000 * 119.99537 * 359.97438 * 13 12 10
15 15 C 1.38943 * 120.00097 * 179.97438 * 13 12 10
16 16 N 1.31411 * 120.00066 * 180.02562 * 15 13 12
17 17 Si 1.86800 * 120.00084 * 359.97438 * 15 13 12
18 18 H 1.48502 * 109.47058 * 90.00108 * 17 15 13
19 19 H 1.48501 * 109.47270 * 210.00181 * 17 15 13
20 20 H 1.48498 * 109.47072 * 329.99719 * 17 15 13
21 21 C 1.38696 * 119.97308 * 0.02562 * 4 3 2
22 22 C 1.39165 * 119.81094 * 0.02562 * 21 4 3
23 23 C 1.48468 * 120.08378 * 179.97438 * 22 21 4
24 24 N 1.34045 * 126.67516 * 179.68641 * 23 22 21
25 25 N 1.28989 * 107.27060 * 179.83501 * 24 23 22
26 26 N 1.28737 * 108.93991 * 0.44268 * 25 24 23
27 27 H 0.96992 * 125.34272 * 179.69133 * 26 25 24
28 28 N 1.28871 * 109.31293 * 359.71641 * 26 25 24
29 29 C 1.38047 * 119.90911 * 180.02562 * 2 1 3
30 30 H 1.09004 * 109.46603 * 90.00698 * 1 2 3
31 31 H 1.08996 * 109.47148 * 209.99747 * 1 2 3
32 32 H 1.08997 * 109.47500 * 330.00541 * 1 2 3
33 33 H 1.08001 * 119.91447 * 0.04060 * 3 2 1
34 34 H 0.97001 * 120.00686 * 324.92910 * 5 4 3
35 35 H 0.97000 * 119.99381 * 0.02562 * 8 6 5
36 36 H 1.09004 * 109.47076 * 300.00092 * 9 8 6
37 37 H 1.09002 * 109.47313 * 60.00144 * 9 8 6
38 38 H 0.97003 * 120.00168 * 359.97438 * 12 10 9
39 39 H 0.97006 * 120.00360 * 180.02562 * 16 15 13
40 40 H 1.07995 * 120.09152 * 179.97438 * 21 4 3
41 41 H 1.08005 * 119.98792 * 359.97438 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1960 1.1981 0.0000
4 6 3.5851 1.2046 -0.0005
5 7 4.2796 2.4197 -0.0065
6 6 5.4435 2.5340 0.6634
7 8 5.9328 1.5602 1.2024
8 7 6.0650 3.7277 0.7358
9 6 7.3304 3.8518 1.4635
10 6 7.8120 5.2781 1.3941
11 8 7.1619 6.1093 0.7961
12 7 8.9645 5.6303 1.9975
13 6 9.4024 6.9280 1.9349
14 1 8.8240 7.6678 1.4016
15 6 10.5903 7.2911 2.5574
16 7 11.0098 8.5351 2.4977
17 14 11.5904 6.0115 3.4803
18 1 12.5604 5.3773 2.5517
19 1 12.3251 6.6655 4.5928
20 1 10.6807 4.9745 4.0300
21 6 4.2836 0.0064 -0.0016
22 6 3.5889 -1.1995 -0.0027
23 6 4.3304 -2.4857 -0.0044
24 7 3.7990 -3.7162 0.0003
25 7 4.7779 -4.5562 -0.0069
26 7 5.8880 -3.9041 -0.0064
27 1 6.7724 -4.3022 -0.0068
28 7 5.6395 -2.6396 -0.0050
29 6 2.1953 -1.1966 -0.0005
30 1 -0.3633 -0.0001 -1.0277
31 1 -0.3633 -0.8900 0.5138
32 1 -0.3634 0.8900 0.5137
33 1 1.6530 2.1317 0.0007
34 1 3.9232 3.1797 -0.4926
35 1 5.6744 4.5046 0.3060
36 1 7.1794 3.5700 2.5056
37 1 8.0744 3.1945 1.0135
38 1 9.4839 4.9658 2.4768
39 1 11.8393 8.7886 2.9320
40 1 5.3636 0.0091 -0.0024
41 1 1.6536 -2.1310 -0.0005
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001592025365.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:17:05
Heat of formation + Delta-G solvation = 92.798146 kcal
Electronic energy + Delta-G solvation = -28143.257192 eV
Core-core repulsion = 23868.665233 eV
Total energy + Delta-G solvation = -4274.591959 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.134 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-44.67134 -40.78717 -39.25755 -38.37865 -35.32319 -34.67038 -34.53320 -34.08408
-33.84856 -31.92112 -31.80869 -30.13657 -27.71263 -27.20118 -24.97543 -24.70649
-24.40968 -22.40934 -21.58158 -20.48117 -19.70782 -19.40277 -18.89372 -18.34080
-17.35572 -17.25794 -16.45335 -15.88834 -15.79427 -15.43874 -15.23383 -14.96691
-14.64418 -14.38368 -14.16256 -13.97891 -13.95828 -13.34222 -13.18134 -12.75737
-12.68746 -12.55545 -12.41096 -12.22414 -12.21029 -11.94834 -11.77780 -11.59430
-11.32177 -11.28089 -11.22611 -10.67777 -10.30952 -10.10597 -10.06510 -9.74242
-9.05142 -8.83393 -8.81476 -8.35132 -8.24958 -6.44676 -3.97551 0.49241
0.95559 1.13457 2.01285 2.10149 2.48207 2.96343 3.01144 3.07563
3.09748 3.43752 3.51054 3.61468 3.93710 3.99929 4.13742 4.51798
4.58613 4.74993 4.92527 5.00815 5.10108 5.14132 5.21071 5.28565
5.34975 5.49718 5.52225 5.59374 5.71068 5.76030 5.77061 6.04088
6.11642 6.18621 6.26294 6.29911 6.48282 6.78199 6.83642 7.40273
7.90830 7.91611 7.97249 8.38735 8.49777 8.77361 9.25324 9.58148
10.67324
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.014017 B = 0.002129 C = 0.001875
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1997.076161 B =13150.125016 C =14931.959443
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.070 4.070
3 C -0.128 4.128
4 C 0.173 3.827
5 N -0.687 5.687
6 C 0.704 3.296
7 O -0.577 6.577
8 N -0.717 5.717
9 C 0.125 3.875
10 C 0.437 3.563
11 O -0.580 6.580
12 N -0.575 5.575
13 C -0.311 4.311
14 H 0.122 0.878
15 C 0.045 3.955
16 N -0.873 5.873
17 Si 0.879 3.121
18 H -0.269 1.269
19 H -0.275 1.275
20 H -0.267 1.267
21 C -0.087 4.087
22 C -0.001 4.001
23 C 0.222 3.778
24 N -0.269 5.269
25 N -0.054 5.054
26 N -0.228 5.228
27 H 0.476 0.524
28 N -0.283 5.283
29 C -0.097 4.097
30 H 0.073 0.927
31 H 0.069 0.931
32 H 0.068 0.932
33 H 0.131 0.869
34 H 0.411 0.589
35 H 0.410 0.590
36 H 0.086 0.914
37 H 0.086 0.914
38 H 0.375 0.625
39 H 0.276 0.724
40 H 0.154 0.846
41 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.888 -22.119 -5.472 27.778
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.071 4.071
3 C -0.150 4.150
4 C 0.078 3.922
5 N -0.335 5.335
6 C 0.404 3.596
7 O -0.454 6.454
8 N -0.375 5.375
9 C -0.003 4.003
10 C 0.223 3.777
11 O -0.464 6.464
12 N -0.212 5.212
13 C -0.439 4.439
14 H 0.139 0.861
15 C -0.159 4.159
16 N -0.512 5.512
17 Si 0.705 3.295
18 H -0.194 1.194
19 H -0.200 1.200
20 H -0.192 1.192
21 C -0.109 4.109
22 C -0.005 4.005
23 C -0.058 4.058
24 N -0.143 5.143
25 N -0.049 5.049
26 N -0.074 5.074
27 H 0.330 0.670
28 N -0.134 5.134
29 C -0.118 4.118
30 H 0.091 0.909
31 H 0.088 0.912
32 H 0.087 0.913
33 H 0.149 0.851
34 H 0.247 0.753
35 H 0.248 0.752
36 H 0.104 0.896
37 H 0.104 0.896
38 H 0.208 0.792
39 H 0.087 0.913
40 H 0.172 0.828
41 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -15.542 -22.837 -5.275 28.123
hybrid contribution 1.328 0.164 0.440 1.408
sum -14.215 -22.673 -4.835 27.194
Atomic orbital electron populations
1.20780 0.90330 1.03149 1.02612 1.19525 0.96241 0.91784 0.99570
1.20941 0.91910 0.98704 1.03428 1.17232 0.90251 0.84819 0.99918
1.42531 1.23412 1.13216 1.54334 1.15820 0.80286 0.83959 0.79504
1.90933 1.66228 1.36850 1.51407 1.44742 1.24769 1.09998 1.57946
1.20863 0.85297 0.96569 0.97617 1.19604 0.83691 0.89099 0.85283
1.90537 1.57003 1.51897 1.46962 1.42112 1.20490 1.10942 1.47693
1.19433 1.06482 0.84593 1.33397 0.86055 1.25071 0.96920 0.96437
0.97473 1.69616 1.22474 1.16268 1.42824 0.86672 0.80993 0.81353
0.80485 1.19376 1.19955 1.19195 1.21346 1.02103 0.89287 0.98180
1.17005 0.91868 0.86576 1.05029 1.23651 0.86348 0.94223 1.01528
1.76050 1.21930 0.98337 1.17935 1.78882 0.88573 1.22437 1.14981
1.47763 1.11504 1.02117 1.46016 0.67011 1.75072 1.17904 0.99304
1.21161 1.20967 0.92033 0.98536 1.00233 0.90883 0.91164 0.91273
0.85087 0.75339 0.75192 0.89632 0.89612 0.79208 0.91340 0.82810
0.84709
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.62 10.01 36.00 0.36 -0.26 16
2 C -0.07 -0.59 5.87 -104.70 -0.61 -1.20 16
3 C -0.13 -1.13 9.61 -39.34 -0.38 -1.51 16
4 C 0.17 1.95 6.29 -83.73 -0.53 1.43 16
5 N -0.69 -7.58 5.34 -14.25 -0.08 -7.66 16
6 C 0.70 10.23 8.41 -86.92 -0.73 9.50 16
7 O -0.58 -10.06 13.79 5.29 0.07 -9.99 16
8 N -0.72 -10.67 5.53 -66.41 -0.37 -11.03 16
9 C 0.12 2.06 6.15 -5.19 -0.03 2.03 16
10 C 0.44 9.26 7.85 -10.98 -0.09 9.18 16
11 O -0.58 -14.12 15.24 5.55 0.08 -14.04 16
12 N -0.57 -13.02 5.09 -10.97 -0.06 -13.07 16
13 C -0.31 -8.40 10.16 -14.94 -0.15 -8.55 16
14 H 0.12 3.74 7.39 -52.49 -0.39 3.35 16
15 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16
16 N -0.87 -24.59 13.96 55.50 0.77 -23.82 16
17 Si 0.88 18.68 27.74 -169.99 -4.71 13.97 16
18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16
19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16
20 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16
21 C -0.09 -1.11 8.35 -39.07 -0.33 -1.43 16
22 C 0.00 -0.01 5.87 -104.92 -0.62 -0.63 16
23 C 0.22 2.71 7.94 -156.31 -1.24 1.47 16
24 N -0.27 -3.21 12.23 32.16 0.39 -2.81 16
25 N -0.05 -0.55 13.47 60.35 0.81 0.26 16
26 N -0.23 -1.88 7.90 60.35 0.48 -1.41 16
27 H 0.48 1.65 8.96 -340.37 -3.05 -1.40 16
28 N -0.28 -3.26 12.08 32.17 0.39 -2.87 16
29 C -0.10 -0.94 9.35 -39.24 -0.37 -1.30 16
30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16
31 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16
32 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16
33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16
34 H 0.41 3.27 8.84 -40.82 -0.36 2.91 16
35 H 0.41 5.87 7.46 -40.82 -0.30 5.57 16
36 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16
37 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16
38 H 0.37 7.48 5.76 -40.82 -0.24 7.24 16
39 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16
40 H 0.15 2.29 6.05 -52.49 -0.32 1.98 16
41 H 0.14 1.15 7.88 -52.48 -0.41 0.74 16
LS Contribution 363.74 15.07 5.48 5.48
Total: -1.00 -35.13 363.74 -8.30 -43.43
By element:
Atomic # 1 Polarization: 20.49 SS G_CDS: -6.77 Total: 13.72 kcal
Atomic # 6 Polarization: 14.63 SS G_CDS: -4.81 Total: 9.83 kcal
Atomic # 7 Polarization: -64.75 SS G_CDS: 2.35 Total: -62.40 kcal
Atomic # 8 Polarization: -24.18 SS G_CDS: 0.16 Total: -24.02 kcal
Atomic # 14 Polarization: 18.68 SS G_CDS: -4.71 Total: 13.97 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -35.13 -8.30 -43.43 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001592025365.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.227 kcal
(2) G-P(sol) polarization free energy of solvation -35.126 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.101 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal
(6) G-S(sol) free energy of system = (1) + (5) 92.798 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds