Wall clock time and date at job start Wed Apr 1 2020 03:17:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.38215 * 119.90304 * 2 1
4 4 C 1.38916 * 120.16920 * 180.02562 * 3 2 1
5 5 N 1.39958 * 120.01330 * 179.71688 * 4 3 2
6 6 C 1.34778 * 119.99763 * 144.91578 * 5 4 3
7 7 O 1.21587 * 119.99921 * 4.63511 * 6 5 4
8 8 N 1.34779 * 120.00207 * 184.62754 * 6 5 4
9 9 C 1.46497 * 120.00139 * 180.02562 * 8 6 5
10 10 C 1.50703 * 109.47119 * 180.02562 * 9 8 6
11 11 O 1.21285 * 119.99812 * 0.02562 * 10 9 8
12 12 N 1.34775 * 119.99984 * 179.97438 * 10 9 8
13 13 C 1.37096 * 120.00115 * 180.02562 * 12 10 9
14 14 H 1.08000 * 119.99537 * 359.97438 * 13 12 10
15 15 C 1.38943 * 120.00097 * 179.97438 * 13 12 10
16 16 N 1.31411 * 120.00066 * 180.02562 * 15 13 12
17 17 Si 1.86800 * 120.00084 * 359.97438 * 15 13 12
18 18 H 1.48502 * 109.47058 * 90.00108 * 17 15 13
19 19 H 1.48501 * 109.47270 * 210.00181 * 17 15 13
20 20 H 1.48498 * 109.47072 * 329.99719 * 17 15 13
21 21 C 1.38696 * 119.97308 * 0.02562 * 4 3 2
22 22 C 1.39165 * 119.81094 * 0.02562 * 21 4 3
23 23 C 1.48468 * 120.08378 * 179.97438 * 22 21 4
24 24 N 1.34045 * 126.67516 * 179.68641 * 23 22 21
25 25 N 1.28989 * 107.27060 * 179.83501 * 24 23 22
26 26 N 1.28737 * 108.93991 * 0.44268 * 25 24 23
27 27 H 0.96992 * 125.34272 * 179.69133 * 26 25 24
28 28 N 1.28871 * 109.31293 * 359.71641 * 26 25 24
29 29 C 1.38047 * 119.90911 * 180.02562 * 2 1 3
30 30 H 1.09004 * 109.46603 * 90.00698 * 1 2 3
31 31 H 1.08996 * 109.47148 * 209.99747 * 1 2 3
32 32 H 1.08997 * 109.47500 * 330.00541 * 1 2 3
33 33 H 1.08001 * 119.91447 * 0.04060 * 3 2 1
34 34 H 0.97001 * 120.00686 * 324.92910 * 5 4 3
35 35 H 0.97000 * 119.99381 * 0.02562 * 8 6 5
36 36 H 1.09004 * 109.47076 * 300.00092 * 9 8 6
37 37 H 1.09002 * 109.47313 * 60.00144 * 9 8 6
38 38 H 0.97003 * 120.00168 * 359.97438 * 12 10 9
39 39 H 0.97006 * 120.00360 * 180.02562 * 16 15 13
40 40 H 1.07995 * 120.09152 * 179.97438 * 21 4 3
41 41 H 1.08005 * 119.98792 * 359.97438 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1960 1.1981 0.0000
4 6 3.5851 1.2046 -0.0005
5 7 4.2796 2.4197 -0.0065
6 6 5.4435 2.5340 0.6634
7 8 5.9328 1.5602 1.2024
8 7 6.0650 3.7277 0.7358
9 6 7.3304 3.8518 1.4635
10 6 7.8120 5.2781 1.3941
11 8 7.1619 6.1093 0.7961
12 7 8.9645 5.6303 1.9975
13 6 9.4024 6.9280 1.9349
14 1 8.8240 7.6678 1.4016
15 6 10.5903 7.2911 2.5574
16 7 11.0098 8.5351 2.4977
17 14 11.5904 6.0115 3.4803
18 1 12.5604 5.3773 2.5517
19 1 12.3251 6.6655 4.5928
20 1 10.6807 4.9745 4.0300
21 6 4.2836 0.0064 -0.0016
22 6 3.5889 -1.1995 -0.0027
23 6 4.3304 -2.4857 -0.0044
24 7 3.7990 -3.7162 0.0003
25 7 4.7779 -4.5562 -0.0069
26 7 5.8880 -3.9041 -0.0064
27 1 6.7724 -4.3022 -0.0068
28 7 5.6395 -2.6396 -0.0050
29 6 2.1953 -1.1966 -0.0005
30 1 -0.3633 -0.0001 -1.0277
31 1 -0.3633 -0.8900 0.5138
32 1 -0.3634 0.8900 0.5137
33 1 1.6530 2.1317 0.0007
34 1 3.9232 3.1797 -0.4926
35 1 5.6744 4.5046 0.3060
36 1 7.1794 3.5700 2.5056
37 1 8.0744 3.1945 1.0135
38 1 9.4839 4.9658 2.4768
39 1 11.8393 8.7886 2.9320
40 1 5.3636 0.0091 -0.0024
41 1 1.6536 -2.1310 -0.0005
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001592025365.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:17:04
Heat of formation + Delta-G solvation = 64.255599 kcal
Electronic energy + Delta-G solvation = -28144.494890 eV
Core-core repulsion = 23868.665233 eV
Total energy + Delta-G solvation = -4275.829656 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.134 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-45.48141 -41.81080 -40.52764 -39.76116 -36.41786 -36.13785 -35.41371 -35.37818
-34.85157 -33.83409 -32.65509 -31.05083 -29.11123 -27.84686 -26.29009 -25.74660
-25.44358 -23.40134 -22.41779 -21.51767 -21.40409 -20.55517 -20.17562 -19.63880
-18.26165 -18.16366 -17.50536 -17.26673 -16.96418 -16.79165 -16.43458 -16.20403
-15.78856 -15.69712 -15.40497 -14.92824 -14.87466 -14.61803 -14.33145 -14.06953
-14.01377 -13.76709 -13.46947 -13.29027 -12.98336 -12.94754 -12.72275 -12.46448
-12.44543 -12.39912 -12.16753 -12.08998 -12.00588 -11.58008 -11.34549 -11.02377
-10.65780 -10.34340 -10.23857 -9.57287 -9.10157 -8.45427 -6.07325 -0.30603
0.15599 0.33167 1.25918 1.31010 1.33950 1.38200 1.42451 1.45888
1.78706 2.00165 2.20361 2.62229 2.76832 2.80752 3.09969 3.11166
3.24342 3.92701 3.97850 4.01921 4.21621 4.31221 4.34670 4.39944
4.42252 4.44188 4.53024 4.79901 4.91824 4.98933 5.19171 5.22553
5.25426 5.44599 5.47253 5.49374 5.57256 5.61446 5.86751 5.88999
5.98758 6.48589 6.78320 6.87778 7.09322 7.28054 7.39330 7.77966
8.70857
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.014017 B = 0.002129 C = 0.001875
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1997.076161 B =13150.125016 C =14931.959443
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 C -0.064 4.064
3 C -0.118 4.118
4 C 0.156 3.844
5 N -0.672 5.672
6 C 0.706 3.294
7 O -0.606 6.606
8 N -0.718 5.718
9 C 0.138 3.862
10 C 0.446 3.554
11 O -0.613 6.613
12 N -0.578 5.578
13 C -0.330 4.330
14 H 0.065 0.935
15 C -0.009 4.009
16 N -0.926 5.926
17 Si 0.958 3.042
18 H -0.257 1.257
19 H -0.274 1.274
20 H -0.232 1.232
21 C -0.106 4.106
22 C -0.015 4.015
23 C 0.211 3.789
24 N -0.285 5.285
25 N -0.054 5.054
26 N -0.203 5.203
27 H 0.493 0.507
28 N -0.302 5.302
29 C -0.096 4.096
30 H 0.087 0.913
31 H 0.077 0.923
32 H 0.081 0.919
33 H 0.160 0.840
34 H 0.426 0.574
35 H 0.413 0.587
36 H 0.103 0.897
37 H 0.105 0.895
38 H 0.392 0.608
39 H 0.281 0.719
40 H 0.128 0.872
41 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.100 -24.557 -4.851 30.315
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.065 4.065
3 C -0.139 4.139
4 C 0.061 3.939
5 N -0.321 5.321
6 C 0.406 3.594
7 O -0.485 6.485
8 N -0.376 5.376
9 C 0.009 3.991
10 C 0.234 3.766
11 O -0.499 6.499
12 N -0.218 5.218
13 C -0.459 4.459
14 H 0.083 0.917
15 C -0.209 4.209
16 N -0.565 5.565
17 Si 0.778 3.222
18 H -0.181 1.181
19 H -0.199 1.199
20 H -0.156 1.156
21 C -0.129 4.129
22 C -0.019 4.019
23 C -0.069 4.069
24 N -0.158 5.158
25 N -0.049 5.049
26 N -0.054 5.054
27 H 0.352 0.648
28 N -0.154 5.154
29 C -0.117 4.117
30 H 0.105 0.895
31 H 0.096 0.904
32 H 0.100 0.900
33 H 0.177 0.823
34 H 0.264 0.736
35 H 0.251 0.749
36 H 0.121 0.879
37 H 0.123 0.877
38 H 0.228 0.772
39 H 0.091 0.909
40 H 0.146 0.854
41 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -16.795 -25.304 -4.683 30.729
hybrid contribution 1.571 0.906 0.140 1.819
sum -15.224 -24.398 -4.542 29.114
Atomic orbital electron populations
1.20863 0.87869 1.04212 1.03805 1.19900 0.97867 0.90983 0.97722
1.21235 0.90798 1.00177 1.01691 1.17405 0.91227 0.84158 1.01059
1.42323 1.22279 1.13868 1.53607 1.15861 0.80901 0.83154 0.79492
1.90925 1.67222 1.37622 1.52762 1.44660 1.24431 1.10376 1.58099
1.20734 0.86414 0.92736 0.99180 1.20471 0.82463 0.90737 0.82950
1.90526 1.57824 1.53756 1.47806 1.41921 1.21379 1.09700 1.48810
1.19021 1.06948 0.85698 1.34219 0.91739 1.26058 0.97748 0.99013
0.98037 1.69779 1.23415 1.19066 1.44276 0.85459 0.79325 0.78662
0.78770 1.18129 1.19939 1.15554 1.21173 1.01019 0.90509 1.00184
1.17141 0.92771 0.86132 1.05861 1.23841 0.86618 0.94599 1.01835
1.76024 1.22580 0.98334 1.18877 1.78807 0.88886 1.22272 1.14959
1.47790 1.12109 1.01259 1.44211 0.64807 1.75039 1.18016 1.00521
1.21859 1.21180 0.91258 0.99689 0.99527 0.89488 0.90410 0.89983
0.82259 0.73552 0.74884 0.87876 0.87730 0.77229 0.90948 0.85420
0.83722
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.84 10.01 71.23 0.71 -0.12 16
2 C -0.06 -0.90 5.87 -19.92 -0.12 -1.02 16
3 C -0.12 -1.77 9.61 22.43 0.22 -1.56 16
4 C 0.16 3.33 6.29 38.12 0.24 3.57 16
5 N -0.67 -13.91 5.34 -317.26 -1.69 -15.60 16
6 C 0.71 19.72 8.41 179.05 1.51 21.22 16
7 O -0.61 -20.70 13.79 -3.99 -0.06 -20.76 16
8 N -0.72 -20.44 5.53 -482.29 -2.67 -23.11 16
9 C 0.14 4.29 6.15 85.63 0.53 4.82 16
10 C 0.45 18.73 7.85 87.66 0.69 19.41 16
11 O -0.61 -30.43 15.24 -3.05 -0.05 -30.47 16
12 N -0.58 -25.90 5.09 -307.00 -1.56 -27.46 16
13 C -0.33 -18.39 10.16 84.04 0.85 -17.54 16
14 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16
15 C -0.01 -0.46 5.50 84.92 0.47 0.01 16
16 N -0.93 -53.83 13.96 21.66 0.30 -53.53 16
17 Si 0.96 37.59 27.74 68.60 1.90 39.49 16
18 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16
19 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16
20 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16
21 C -0.11 -2.71 8.35 22.60 0.19 -2.52 16
22 C -0.02 -0.35 5.87 -20.06 -0.12 -0.47 16
23 C 0.21 5.12 7.94 137.38 1.09 6.21 16
24 N -0.29 -6.65 12.23 -52.18 -0.64 -7.29 16
25 N -0.05 -1.07 13.47 37.02 0.50 -0.57 16
26 N -0.20 -3.21 7.90 37.02 0.29 -2.92 16
27 H 0.49 2.90 8.96 -347.55 -3.12 -0.22 16
28 N -0.30 -6.92 12.08 -52.13 -0.63 -7.55 16
29 C -0.10 -1.71 9.35 22.49 0.21 -1.50 16
30 H 0.09 0.47 8.14 -2.38 -0.02 0.46 16
31 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16
32 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16
33 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16
34 H 0.43 6.00 8.84 -92.71 -0.82 5.19 16
35 H 0.41 11.45 7.46 -92.71 -0.69 10.76 16
36 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16
37 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16
38 H 0.39 14.73 5.76 -92.71 -0.53 14.19 16
39 H 0.28 14.95 8.31 -92.70 -0.77 14.18 16
40 H 0.13 3.93 6.05 -2.91 -0.02 3.91 16
41 H 0.15 2.25 7.88 -2.91 -0.02 2.23 16
Total: -1.00 -80.30 363.74 -1.89 -82.18
By element:
Atomic # 1 Polarization: 41.13 SS G_CDS: -4.05 Total: 37.08 kcal
Atomic # 6 Polarization: 24.05 SS G_CDS: 6.46 Total: 30.52 kcal
Atomic # 7 Polarization: -131.94 SS G_CDS: -6.10 Total: -138.04 kcal
Atomic # 8 Polarization: -51.13 SS G_CDS: -0.10 Total: -51.23 kcal
Atomic # 14 Polarization: 37.59 SS G_CDS: 1.90 Total: 39.49 kcal
Total: -80.30 -1.89 -82.18 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001592025365.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.436 kcal
(2) G-P(sol) polarization free energy of solvation -80.295 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.141 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.885 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.180 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.256 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds