Wall clock time and date at job start Wed Apr 1 2020 03:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38211 * 119.91720 * 2 1 4 4 C 1.38051 * 120.18855 * 179.74547 * 3 2 1 5 5 C 1.39360 * 120.02027 * 0.55950 * 4 3 2 6 6 C 1.48476 * 120.08093 * 179.71783 * 5 4 3 7 7 N 1.34038 * 126.66860 * 179.72690 * 6 5 4 8 8 N 1.28991 * 107.26645 * 180.02562 * 7 6 5 9 9 N 1.28728 * 108.93939 * 359.97438 * 8 7 6 10 10 H 0.97004 * 125.33996 * 180.02562 * 9 8 7 11 11 N 1.28865 * 109.32129 * 0.02562 * 9 8 7 12 12 C 1.39170 * 119.83555 * 359.44774 * 5 4 3 13 13 C 1.38690 * 119.80611 * 0.27104 * 12 5 4 14 14 N 1.39963 * 120.00844 * 180.02562 * 13 12 5 15 15 C 1.34781 * 120.00067 * 325.25877 * 14 13 12 16 16 O 1.21587 * 119.99514 * 4.51265 * 15 14 13 17 17 N 1.34770 * 119.99862 * 184.50944 * 15 14 13 18 18 C 1.46506 * 119.99966 * 180.02562 * 17 15 14 19 19 C 1.50694 * 109.47364 * 180.02562 * 18 17 15 20 20 O 1.21300 * 119.99790 * 359.97438 * 19 18 17 21 21 N 1.34781 * 120.00191 * 179.97438 * 19 18 17 22 22 C 1.37092 * 119.99923 * 179.97438 * 21 19 18 23 23 H 1.08007 * 120.00307 * 0.02562 * 22 21 19 24 24 C 1.38954 * 120.00059 * 179.97438 * 22 21 19 25 25 N 1.31409 * 119.99418 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 120.00318 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.47338 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47143 * 120.00242 * 26 24 22 29 29 H 1.48495 * 109.47663 * 240.00166 * 26 24 22 30 30 H 1.09007 * 109.46663 * 269.97881 * 1 2 3 31 31 H 1.09000 * 109.47130 * 29.97370 * 1 2 3 32 32 H 1.08994 * 109.47558 * 149.97451 * 1 2 3 33 33 H 1.08001 * 119.90459 * 0.02817 * 3 2 1 34 34 H 1.07995 * 119.99269 * 180.27803 * 4 3 2 35 35 H 1.07994 * 120.09774 * 180.29888 * 12 5 4 36 36 H 0.96998 * 120.00232 * 145.26117 * 14 13 12 37 37 H 0.97004 * 120.00410 * 0.02562 * 17 15 14 38 38 H 1.09005 * 109.46783 * 300.00021 * 18 17 15 39 39 H 1.08997 * 109.47035 * 59.99380 * 18 17 15 40 40 H 0.96992 * 119.99618 * 359.97438 * 21 19 18 41 41 H 0.97009 * 119.99895 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1979 0.0000 4 6 3.5768 1.2045 0.0053 5 6 4.2798 0.0012 -0.0011 6 6 5.7646 0.0067 -0.0017 7 7 6.5690 -1.0655 -0.0024 8 7 7.7840 -0.6324 -0.0023 9 7 7.7689 0.6547 -0.0021 10 1 8.5535 1.2251 -0.0023 11 7 6.5479 1.0668 -0.0016 12 6 3.5867 -1.2056 -0.0012 13 6 2.1998 -1.2041 -0.0006 14 7 1.4984 -2.4153 -0.0002 15 6 1.9905 -3.4792 -0.6655 16 8 3.0820 -3.4121 -1.1969 17 7 1.2727 -4.6173 -0.7414 18 6 1.8078 -5.7740 -1.4641 19 6 0.8176 -6.9082 -1.4003 20 8 -0.2317 -6.7647 -0.8089 21 7 1.0980 -8.0821 -2.0004 22 6 0.1974 -9.1140 -1.9419 23 1 -0.7369 -8.9863 -1.4153 24 6 0.4861 -10.3241 -2.5609 25 7 1.6227 -10.4793 -3.2020 26 14 -0.7412 -11.7300 -2.4819 27 1 -1.9339 -11.3030 -1.7069 28 1 -1.1539 -12.1047 -3.8583 29 1 -0.1119 -12.8998 -1.8181 30 1 -0.3633 -0.0004 1.0278 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6534 2.1316 0.0005 34 1 4.1122 2.1424 0.0098 35 1 4.1272 -2.1406 -0.0013 36 1 0.6582 -2.4891 0.4788 37 1 0.4017 -4.6707 -0.3177 38 1 1.9825 -5.5028 -2.5053 39 1 2.7472 -6.0850 -1.0071 40 1 1.9368 -8.1966 -2.4735 41 1 1.8245 -11.3241 -3.6339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592106314.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:09 Heat of formation + Delta-G solvation = 88.217858 kcal Electronic energy + Delta-G solvation = -28268.074841 eV Core-core repulsion = 23993.284266 eV Total energy + Delta-G solvation = -4274.790575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.61707 -40.78403 -39.11767 -38.13888 -35.36874 -34.55059 -34.42750 -33.74558 -33.69370 -32.06028 -31.39359 -30.04687 -27.83167 -27.15511 -24.91634 -24.51790 -23.75398 -22.89357 -21.29029 -20.62233 -19.62177 -19.51752 -18.47677 -18.07070 -17.56609 -17.30460 -16.00799 -15.88126 -15.67952 -15.15420 -15.10704 -14.64918 -14.45600 -14.27045 -14.17512 -13.94474 -13.84436 -13.61595 -13.41025 -12.73344 -12.63455 -12.44923 -12.21601 -12.06269 -11.76339 -11.65834 -11.63494 -11.51584 -11.24652 -11.15743 -11.08547 -10.41252 -10.35332 -10.32212 -9.97778 -9.65383 -8.92079 -8.75422 -8.64627 -8.16050 -8.10463 -6.51893 -3.93951 0.50400 1.01927 1.21690 2.03616 2.15497 2.59787 3.09922 3.19117 3.22562 3.29041 3.50612 3.66509 3.73880 4.01796 4.08431 4.30495 4.60403 4.67626 4.86684 4.93637 5.08129 5.15809 5.16886 5.29003 5.29658 5.34715 5.50717 5.71836 5.81366 5.89881 5.97330 6.03177 6.06144 6.16713 6.22939 6.26998 6.36475 6.64981 6.85098 6.92773 7.45832 7.91668 7.98613 8.03783 8.43927 8.61128 9.04052 9.38652 9.86128 10.64968 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015309 B = 0.002049 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.602196 B =13662.522328 C =15357.162593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.095 4.095 3 C -0.106 4.106 4 C -0.097 4.097 5 C -0.011 4.011 6 C 0.225 3.775 7 N -0.258 5.258 8 N -0.050 5.050 9 N -0.231 5.231 10 H 0.474 0.526 11 N -0.298 5.298 12 C -0.074 4.074 13 C 0.170 3.830 14 N -0.686 5.686 15 C 0.702 3.298 16 O -0.573 6.573 17 N -0.717 5.717 18 C 0.127 3.873 19 C 0.428 3.572 20 O -0.599 6.599 21 N -0.548 5.548 22 C -0.305 4.305 23 H 0.106 0.894 24 C 0.025 3.975 25 N -0.893 5.893 26 Si 0.933 3.067 27 H -0.267 1.267 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.159 0.841 36 H 0.409 0.591 37 H 0.408 0.592 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.396 0.604 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 25.800 6.932 27.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.099 4.099 3 C -0.124 4.124 4 C -0.118 4.118 5 C -0.015 4.015 6 C -0.054 4.054 7 N -0.131 5.131 8 N -0.045 5.045 9 N -0.077 5.077 10 H 0.328 0.672 11 N -0.150 5.150 12 C -0.096 4.096 13 C 0.074 3.926 14 N -0.334 5.334 15 C 0.402 3.598 16 O -0.450 6.450 17 N -0.374 5.374 18 C -0.001 4.001 19 C 0.214 3.786 20 O -0.485 6.485 21 N -0.183 5.183 22 C -0.434 4.434 23 H 0.124 0.876 24 C -0.178 4.178 25 N -0.533 5.533 26 Si 0.759 3.241 27 H -0.191 1.191 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.176 0.824 36 H 0.245 0.755 37 H 0.246 0.754 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.230 0.770 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.832 25.336 6.682 27.078 hybrid contribution -0.624 -0.364 0.021 0.722 sum 6.208 24.972 6.703 26.591 Atomic orbital electron populations 1.20798 0.90577 1.03533 1.02616 1.19861 0.96449 0.91670 1.01887 1.20696 0.93348 0.97095 1.01280 1.21048 0.94077 0.96910 0.99739 1.17023 0.84301 0.94202 1.05982 1.23665 0.96425 0.84190 1.01163 1.76218 0.94449 1.25418 1.17022 1.78970 1.17240 0.93669 1.14669 1.47729 1.07567 1.06026 1.46369 0.67206 1.74876 0.90722 1.26812 1.22561 1.21396 0.92683 0.98800 0.96736 1.17097 0.90477 0.84159 1.00846 1.42550 1.26721 1.09332 1.54786 1.15853 0.84276 0.80099 0.79560 1.90950 1.20055 1.82549 1.51474 1.44761 1.22944 1.11374 1.58289 1.20851 0.96872 0.84837 0.97551 1.19722 0.88736 0.84520 0.85655 1.90493 1.27101 1.82476 1.48476 1.41790 1.19844 1.10317 1.46320 1.19773 1.00739 0.90255 1.32637 0.87608 1.25337 0.97273 0.99025 0.96139 1.69626 1.22719 1.26808 1.34191 0.85754 0.80066 0.80153 0.78085 1.19138 1.20623 1.20604 0.90741 0.90852 0.91245 0.84959 0.85058 0.82377 0.75474 0.75392 0.89738 0.89645 0.76972 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.46 36.01 0.34 -0.45 16 2 C -0.09 -0.88 5.90 -104.38 -0.62 -1.50 16 3 C -0.11 -0.87 9.68 -39.66 -0.38 -1.26 16 4 C -0.10 -0.92 9.70 -39.23 -0.38 -1.30 16 5 C -0.01 -0.13 5.87 -104.91 -0.62 -0.75 16 6 C 0.23 2.85 7.93 -156.31 -1.24 1.61 16 7 N -0.26 -3.66 12.23 32.16 0.39 -3.27 16 8 N -0.05 -0.58 13.47 60.35 0.81 0.24 16 9 N -0.23 -1.83 7.90 60.35 0.48 -1.36 16 10 H 0.47 1.26 8.96 -340.37 -3.05 -1.79 16 11 N -0.30 -3.02 12.08 32.17 0.39 -2.63 16 12 C -0.07 -1.01 8.35 -39.07 -0.33 -1.33 16 13 C 0.17 2.04 6.28 -83.73 -0.53 1.52 16 14 N -0.69 -8.16 4.75 -14.25 -0.07 -8.23 16 15 C 0.70 10.98 8.41 -86.92 -0.73 10.25 16 16 O -0.57 -10.79 13.75 5.29 0.07 -10.72 16 17 N -0.72 -11.48 5.53 -66.41 -0.37 -11.84 16 18 C 0.13 2.30 6.15 -5.19 -0.03 2.27 16 19 C 0.43 9.63 7.85 -10.99 -0.09 9.54 16 20 O -0.60 -14.95 15.24 5.54 0.08 -14.87 16 21 N -0.55 -13.45 5.29 -10.96 -0.06 -13.51 16 22 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 23 H 0.11 2.97 7.16 -52.48 -0.38 2.59 16 24 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 25 N -0.89 -23.80 13.05 55.50 0.72 -23.07 16 26 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 29 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 30 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.07 0.50 7.16 -51.93 -0.37 0.13 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.13 1.02 7.88 -52.49 -0.41 0.61 16 35 H 0.16 2.58 6.02 -52.49 -0.32 2.27 16 36 H 0.41 3.65 7.86 -40.82 -0.32 3.33 16 37 H 0.41 6.23 7.46 -40.82 -0.30 5.93 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.40 9.39 7.90 -40.82 -0.32 9.07 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -34.62 364.20 -8.63 -43.26 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -6.72 Total: 14.32 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: -4.84 Total: 10.80 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: 2.30 Total: -63.68 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: 0.16 Total: -25.59 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.62 -8.63 -43.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592106314.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.474 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds