Wall clock time and date at job start Wed Apr 1 2020 03:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38211 * 119.91720 * 2 1 4 4 C 1.38051 * 120.18855 * 179.74547 * 3 2 1 5 5 C 1.39360 * 120.02027 * 0.55950 * 4 3 2 6 6 C 1.48476 * 120.08093 * 179.71783 * 5 4 3 7 7 N 1.34038 * 126.66860 * 179.72690 * 6 5 4 8 8 N 1.28991 * 107.26645 * 180.02562 * 7 6 5 9 9 N 1.28728 * 108.93939 * 359.97438 * 8 7 6 10 10 H 0.97004 * 125.33996 * 180.02562 * 9 8 7 11 11 N 1.28865 * 109.32129 * 0.02562 * 9 8 7 12 12 C 1.39170 * 119.83555 * 359.44774 * 5 4 3 13 13 C 1.38690 * 119.80611 * 0.27104 * 12 5 4 14 14 N 1.39963 * 120.00844 * 180.02562 * 13 12 5 15 15 C 1.34781 * 120.00067 * 325.25877 * 14 13 12 16 16 O 1.21587 * 119.99514 * 4.51265 * 15 14 13 17 17 N 1.34770 * 119.99862 * 184.50944 * 15 14 13 18 18 C 1.46506 * 119.99966 * 180.02562 * 17 15 14 19 19 C 1.50694 * 109.47364 * 180.02562 * 18 17 15 20 20 O 1.21300 * 119.99790 * 359.97438 * 19 18 17 21 21 N 1.34781 * 120.00191 * 179.97438 * 19 18 17 22 22 C 1.37092 * 119.99923 * 179.97438 * 21 19 18 23 23 H 1.08007 * 120.00307 * 0.02562 * 22 21 19 24 24 C 1.38954 * 120.00059 * 179.97438 * 22 21 19 25 25 N 1.31409 * 119.99418 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 120.00318 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.47338 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47143 * 120.00242 * 26 24 22 29 29 H 1.48495 * 109.47663 * 240.00166 * 26 24 22 30 30 H 1.09007 * 109.46663 * 269.97881 * 1 2 3 31 31 H 1.09000 * 109.47130 * 29.97370 * 1 2 3 32 32 H 1.08994 * 109.47558 * 149.97451 * 1 2 3 33 33 H 1.08001 * 119.90459 * 0.02817 * 3 2 1 34 34 H 1.07995 * 119.99269 * 180.27803 * 4 3 2 35 35 H 1.07994 * 120.09774 * 180.29888 * 12 5 4 36 36 H 0.96998 * 120.00232 * 145.26117 * 14 13 12 37 37 H 0.97004 * 120.00410 * 0.02562 * 17 15 14 38 38 H 1.09005 * 109.46783 * 300.00021 * 18 17 15 39 39 H 1.08997 * 109.47035 * 59.99380 * 18 17 15 40 40 H 0.96992 * 119.99618 * 359.97438 * 21 19 18 41 41 H 0.97009 * 119.99895 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1979 0.0000 4 6 3.5768 1.2045 0.0053 5 6 4.2798 0.0012 -0.0011 6 6 5.7646 0.0067 -0.0017 7 7 6.5690 -1.0655 -0.0024 8 7 7.7840 -0.6324 -0.0023 9 7 7.7689 0.6547 -0.0021 10 1 8.5535 1.2251 -0.0023 11 7 6.5479 1.0668 -0.0016 12 6 3.5867 -1.2056 -0.0012 13 6 2.1998 -1.2041 -0.0006 14 7 1.4984 -2.4153 -0.0002 15 6 1.9905 -3.4792 -0.6655 16 8 3.0820 -3.4121 -1.1969 17 7 1.2727 -4.6173 -0.7414 18 6 1.8078 -5.7740 -1.4641 19 6 0.8176 -6.9082 -1.4003 20 8 -0.2317 -6.7647 -0.8089 21 7 1.0980 -8.0821 -2.0004 22 6 0.1974 -9.1140 -1.9419 23 1 -0.7369 -8.9863 -1.4153 24 6 0.4861 -10.3241 -2.5609 25 7 1.6227 -10.4793 -3.2020 26 14 -0.7412 -11.7300 -2.4819 27 1 -1.9339 -11.3030 -1.7069 28 1 -1.1539 -12.1047 -3.8583 29 1 -0.1119 -12.8998 -1.8181 30 1 -0.3633 -0.0004 1.0278 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6534 2.1316 0.0005 34 1 4.1122 2.1424 0.0098 35 1 4.1272 -2.1406 -0.0013 36 1 0.6582 -2.4891 0.4788 37 1 0.4017 -4.6707 -0.3177 38 1 1.9825 -5.5028 -2.5053 39 1 2.7472 -6.0850 -1.0071 40 1 1.9368 -8.1966 -2.4735 41 1 1.8245 -11.3241 -3.6339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592106314.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:08 Heat of formation + Delta-G solvation = 60.966524 kcal Electronic energy + Delta-G solvation = -28269.256547 eV Core-core repulsion = 23993.284266 eV Total energy + Delta-G solvation = -4275.972281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.46651 -41.86406 -40.42931 -39.65875 -36.38958 -36.19788 -35.36499 -35.35409 -34.57496 -33.36540 -32.83155 -31.01571 -29.07573 -28.14751 -26.43134 -25.69439 -24.57684 -23.85715 -22.21025 -21.70717 -21.35538 -20.36267 -20.10694 -19.55862 -18.60689 -18.14868 -17.43924 -17.05059 -16.96933 -16.55709 -16.29474 -16.15540 -15.79240 -15.60461 -15.20795 -15.16338 -15.00369 -14.64101 -14.35627 -13.96566 -13.66423 -13.54304 -13.45022 -13.31819 -13.16261 -12.91319 -12.50856 -12.45370 -12.43371 -12.39158 -12.13892 -12.10038 -11.95927 -11.57073 -11.36726 -11.11919 -10.55362 -10.27106 -10.08278 -9.57511 -9.04438 -8.50283 -6.00388 -0.30795 0.16405 0.37518 1.27169 1.35889 1.38725 1.43549 1.48239 1.58801 1.89645 2.02121 2.28808 2.65608 2.82772 2.98842 3.17105 3.17852 3.27800 3.91964 3.95076 4.16834 4.19998 4.30363 4.35567 4.43404 4.45414 4.49093 4.53664 4.81846 4.90039 4.96580 5.20884 5.23222 5.30625 5.39524 5.43432 5.48559 5.53131 5.63320 5.87785 5.93064 5.99818 6.48421 6.89167 7.04244 7.11891 7.38009 7.46422 7.94691 8.66878 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015309 B = 0.002049 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.602196 B =13662.522328 C =15357.162593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.084 4.084 3 C -0.096 4.096 4 C -0.087 4.087 5 C -0.028 4.028 6 C 0.211 3.789 7 N -0.304 5.304 8 N -0.062 5.062 9 N -0.198 5.198 10 H 0.495 0.505 11 N -0.287 5.287 12 C -0.098 4.098 13 C 0.146 3.854 14 N -0.669 5.669 15 C 0.703 3.297 16 O -0.607 6.607 17 N -0.715 5.715 18 C 0.141 3.859 19 C 0.435 3.565 20 O -0.622 6.622 21 N -0.560 5.560 22 C -0.335 4.335 23 H 0.088 0.912 24 C -0.013 4.013 25 N -0.917 5.917 26 Si 0.998 3.002 27 H -0.269 1.269 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.173 0.827 34 H 0.152 0.848 35 H 0.123 0.877 36 H 0.424 0.576 37 H 0.413 0.587 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.399 0.601 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.881 28.244 7.246 29.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.088 4.088 3 C -0.114 4.114 4 C -0.108 4.108 5 C -0.032 4.032 6 C -0.069 4.069 7 N -0.175 5.175 8 N -0.056 5.056 9 N -0.050 5.050 10 H 0.354 0.646 11 N -0.139 5.139 12 C -0.121 4.121 13 C 0.051 3.949 14 N -0.318 5.318 15 C 0.403 3.597 16 O -0.487 6.487 17 N -0.372 5.372 18 C 0.012 3.988 19 C 0.222 3.778 20 O -0.510 6.510 21 N -0.195 5.195 22 C -0.464 4.464 23 H 0.106 0.894 24 C -0.213 4.213 25 N -0.557 5.557 26 Si 0.821 3.179 27 H -0.193 1.193 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.190 0.810 34 H 0.170 0.830 35 H 0.141 0.859 36 H 0.263 0.737 37 H 0.251 0.749 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.233 0.767 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.844 27.822 7.019 29.283 hybrid contribution -0.242 -0.917 -0.037 0.949 sum 5.601 26.906 6.982 28.356 Atomic orbital electron populations 1.20898 0.88361 1.04233 1.04034 1.20197 0.97968 0.90759 0.99878 1.21161 0.92899 0.98171 0.99155 1.21337 0.94814 0.96499 0.98171 1.17183 0.84292 0.94715 1.07046 1.23879 0.96996 0.84298 1.01727 1.76201 0.95453 1.26987 1.18901 1.78891 1.16530 0.94858 1.15365 1.47798 1.07950 1.05518 1.43705 0.64577 1.74829 0.91028 1.25880 1.22209 1.21181 0.93586 0.98162 0.99123 1.17304 0.90106 0.84877 1.02591 1.42301 1.27015 1.08526 1.53964 1.15922 0.83719 0.80487 0.79541 1.90943 1.21537 1.83172 1.53028 1.44623 1.23142 1.11073 1.58406 1.20622 0.95629 0.83962 0.98544 1.20356 0.88816 0.84754 0.83867 1.90470 1.28441 1.83048 1.49075 1.41844 1.19796 1.10718 1.47166 1.19778 1.00939 0.91734 1.33956 0.89421 1.26152 0.98976 1.00880 0.95313 1.69695 1.23892 1.27657 1.34457 0.84799 0.77717 0.77056 0.78332 1.19289 1.19699 1.19737 0.88828 0.88831 0.91904 0.81001 0.83021 0.85947 0.73734 0.74852 0.88854 0.88929 0.76725 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.46 71.24 0.67 -0.51 16 2 C -0.08 -1.36 5.90 -19.71 -0.12 -1.48 16 3 C -0.10 -1.24 9.68 22.22 0.22 -1.03 16 4 C -0.09 -1.46 9.70 22.50 0.22 -1.24 16 5 C -0.03 -0.69 5.87 -20.05 -0.12 -0.81 16 6 C 0.21 5.39 7.93 137.39 1.09 6.48 16 7 N -0.30 -9.01 12.23 -52.18 -0.64 -9.65 16 8 N -0.06 -1.43 13.47 37.02 0.50 -0.93 16 9 N -0.20 -2.95 7.90 37.02 0.29 -2.66 16 10 H 0.49 1.81 8.96 -347.54 -3.12 -1.31 16 11 N -0.29 -5.51 12.08 -52.13 -0.63 -6.14 16 12 C -0.10 -2.79 8.35 22.60 0.19 -2.60 16 13 C 0.15 3.46 6.28 38.11 0.24 3.70 16 14 N -0.67 -15.82 4.75 -317.26 -1.51 -17.33 16 15 C 0.70 22.42 8.41 179.06 1.51 23.92 16 16 O -0.61 -23.84 13.75 -3.99 -0.05 -23.89 16 17 N -0.72 -23.08 5.53 -482.30 -2.67 -25.75 16 18 C 0.14 5.17 6.15 85.63 0.53 5.69 16 19 C 0.44 19.90 7.85 87.65 0.69 20.59 16 20 O -0.62 -31.52 15.24 -3.09 -0.05 -31.57 16 21 N -0.56 -28.10 5.29 -306.97 -1.62 -29.72 16 22 C -0.33 -18.39 9.68 84.04 0.81 -17.57 16 23 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 25 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 26 Si 1.00 41.79 29.55 68.60 2.03 43.82 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 28 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 29 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 30 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.09 0.61 8.08 -2.39 -0.02 0.59 16 32 H 0.06 0.74 7.16 -2.39 -0.02 0.73 16 33 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 34 H 0.15 1.88 7.88 -2.91 -0.02 1.86 16 35 H 0.12 4.37 6.02 -2.91 -0.02 4.35 16 36 H 0.42 7.19 7.86 -92.71 -0.73 6.46 16 37 H 0.41 12.60 7.46 -92.71 -0.69 11.91 16 38 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 39 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 41 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 Total: -1.00 -77.38 364.20 -1.77 -79.15 By element: Atomic # 1 Polarization: 42.56 SS G_CDS: -4.10 Total: 38.46 kcal Atomic # 6 Polarization: 28.55 SS G_CDS: 6.39 Total: 34.95 kcal Atomic # 7 Polarization: -134.93 SS G_CDS: -5.99 Total: -140.92 kcal Atomic # 8 Polarization: -55.36 SS G_CDS: -0.10 Total: -55.46 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -77.38 -1.77 -79.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592106314.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.119 kcal (2) G-P(sol) polarization free energy of solvation -77.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds