Wall clock time and date at job start Wed Apr 1 2020 04:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47012 * 2 1 4 4 H 1.09002 * 109.47017 * 305.00433 * 3 2 1 5 5 C 1.50700 * 109.46969 * 185.00332 * 3 2 1 6 6 H 1.08000 * 120.00050 * 239.99796 * 5 3 2 7 7 C 1.37872 * 120.00088 * 60.00355 * 5 3 2 8 8 N 1.31520 * 120.00209 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00128 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47291 * 89.99909 * 9 7 5 11 11 H 1.48499 * 109.46985 * 210.00033 * 9 7 5 12 12 H 1.48503 * 109.46649 * 329.99746 * 9 7 5 13 13 N 1.46501 * 109.47132 * 65.00310 * 3 2 1 14 14 C 1.34778 * 119.99876 * 274.99884 * 13 3 2 15 15 O 1.21356 * 120.00056 * 0.02562 * 14 13 3 16 16 C 1.49355 * 119.99744 * 179.97438 * 14 13 3 17 17 O 1.21359 * 119.99856 * 0.02562 * 16 14 13 18 18 N 1.34778 * 119.99744 * 179.97438 * 16 14 13 19 19 C 1.39157 * 119.99726 * 174.91568 * 18 16 14 20 20 C 1.39183 * 119.57066 * 185.06916 * 19 18 16 21 21 C 1.38115 * 119.21558 * 179.97438 * 20 19 18 22 22 C 1.39898 * 118.40067 * 0.02562 * 21 20 19 23 23 C 1.48417 * 120.46351 * 179.97438 * 22 21 20 24 24 N 1.34069 * 126.67202 * 359.68876 * 23 22 21 25 25 N 1.28992 * 107.26341 * 179.83387 * 24 23 22 26 26 N 1.28727 * 108.94831 * 0.43496 * 25 24 23 27 27 H 0.97005 * 125.33836 * 179.69376 * 26 25 24 28 28 N 1.28872 * 109.32632 * 359.72004 * 26 25 24 29 29 C 1.39205 * 119.08157 * 359.97438 * 22 21 20 30 30 N 1.31758 * 120.68729 * 359.74818 * 29 22 21 31 31 H 1.09002 * 109.46851 * 299.99486 * 1 2 3 32 32 H 1.08999 * 109.47679 * 59.99768 * 1 2 3 33 33 H 1.09005 * 109.47230 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46851 * 240.00513 * 2 1 3 35 35 H 1.08999 * 109.47679 * 120.00232 * 2 1 3 36 36 H 0.97000 * 119.99790 * 179.97438 * 8 7 5 37 37 H 0.96996 * 119.99966 * 94.99836 * 13 3 2 38 38 H 0.97000 * 120.00364 * 354.91881 * 18 16 14 39 39 H 1.07999 * 120.38752 * 359.95989 * 20 19 18 40 40 H 1.08007 * 120.80350 * 179.97438 * 21 20 19 41 41 H 1.08007 * 119.65749 * 180.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1431 0.8785 -1.2281 8 7 3.4060 0.3368 -2.1730 9 14 6.0048 0.8814 -1.3820 10 1 6.5548 -0.3500 -0.7606 11 1 6.3827 0.9226 -2.8176 12 1 6.5568 2.0740 -0.6904 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3402 2.6319 0.4339 16 6 0.0398 3.3316 2.6435 17 8 0.8150 3.3637 3.5767 18 7 -1.1773 3.8990 2.7585 19 6 -1.5862 4.4269 3.9793 20 6 -2.8825 4.9148 4.1171 21 6 -3.2808 5.4367 5.3322 22 6 -2.3578 5.4545 6.3834 23 6 -2.7370 6.0053 7.7084 24 7 -3.9243 6.5267 8.0488 25 7 -3.8445 6.8856 9.2852 26 7 -2.6632 6.6198 9.7222 27 1 -2.3446 6.7967 10.6211 28 7 -1.9701 6.0824 8.7780 29 6 -1.0788 4.9483 6.1695 30 7 -0.7389 4.4537 4.9965 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.8291 -0.0609 -2.9500 37 1 2.2719 2.1231 1.9978 38 1 -1.7682 3.9393 1.9903 39 1 -3.5686 4.8857 3.2835 40 1 -4.2804 5.8226 5.4675 41 1 -0.3590 4.9571 6.9747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604014318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:02 Heat of formation + Delta-G solvation = 107.253672 kcal Electronic energy + Delta-G solvation = -28494.911872 eV Core-core repulsion = 24220.946752 eV Total energy + Delta-G solvation = -4273.965120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.80525 -41.14409 -39.80449 -38.14685 -35.74774 -35.16588 -34.62376 -33.73625 -32.62100 -32.41814 -31.01385 -30.24694 -27.34611 -25.76006 -25.35932 -24.17309 -23.65031 -22.82751 -22.07272 -20.39719 -19.60710 -19.48477 -18.86489 -17.81735 -17.49843 -16.84249 -16.64720 -15.96001 -15.92290 -15.62685 -15.09045 -14.73038 -14.58110 -14.27923 -14.24027 -13.64153 -13.57156 -13.33135 -12.97199 -12.76463 -12.62323 -12.17178 -11.91989 -11.66033 -11.60516 -11.51950 -11.37954 -11.28485 -11.02416 -10.87029 -10.64600 -10.38762 -10.28670 -10.12652 -9.82363 -9.69636 -9.15413 -8.95232 -8.58611 -8.47251 -8.06420 -6.18863 -4.28523 0.22961 0.78460 0.96724 1.70900 1.87151 2.12794 2.40784 3.23094 3.29581 3.30282 3.33220 3.47853 3.75589 3.78844 3.82564 4.26652 4.35940 4.54179 4.62135 4.82050 4.90524 5.06423 5.11744 5.13769 5.36830 5.57240 5.73028 5.90600 5.99830 6.29509 6.34359 6.36131 6.53151 6.79068 6.92825 7.03725 7.12021 7.25023 7.41514 7.59028 7.67228 7.77188 7.78351 7.96737 8.06340 8.40836 8.59175 8.83500 9.38335 10.86450 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.001922 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.178678 B =14562.226573 C =15316.792821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.666 5.666 14 C 0.495 3.505 15 O -0.530 6.530 16 C 0.497 3.503 17 O -0.449 6.449 18 N -0.640 5.640 19 C 0.387 3.613 20 C -0.207 4.207 21 C -0.002 4.002 22 C -0.116 4.116 23 C 0.234 3.766 24 N -0.271 5.271 25 N -0.049 5.049 26 N -0.227 5.227 27 H 0.476 0.524 28 N -0.295 5.295 29 C 0.183 3.817 30 N -0.477 5.477 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.026 0.974 34 H 0.104 0.896 35 H 0.035 0.965 36 H 0.266 0.734 37 H 0.402 0.598 38 H 0.432 0.568 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.683 10.657 18.943 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.315 5.315 14 C 0.274 3.726 15 O -0.409 6.409 16 C 0.278 3.722 17 O -0.315 6.315 18 N -0.287 5.287 19 C 0.154 3.846 20 C -0.230 4.230 21 C -0.030 4.030 22 C -0.123 4.123 23 C -0.047 4.047 24 N -0.145 5.145 25 N -0.045 5.045 26 N -0.073 5.073 27 H 0.330 0.670 28 N -0.146 5.146 29 C 0.021 3.979 30 N -0.191 5.191 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.122 0.878 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.237 0.763 38 H 0.271 0.729 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.098 10.396 18.937 25.264 hybrid contribution 0.587 0.245 0.335 0.719 sum -12.511 10.642 19.272 25.322 Atomic orbital electron populations 1.21857 0.98299 0.98446 1.01018 1.21970 0.92660 0.99378 1.02818 1.19036 0.94823 0.89402 0.80040 0.92667 1.21203 0.90286 1.39434 1.06576 0.91733 1.24873 0.98840 0.94609 0.95239 1.69882 1.35260 1.37402 1.09345 0.86404 0.84527 0.78591 0.77371 1.20462 1.21045 1.19755 1.46472 1.13327 1.52396 1.19272 1.19590 0.84581 0.81544 0.86932 1.90743 1.51118 1.59631 1.39412 1.21170 0.81625 0.79429 0.89983 1.90840 1.48746 1.52576 1.39341 1.43436 1.18616 1.55897 1.10799 1.18719 0.89323 0.90158 0.86363 1.21460 0.95634 1.06041 0.99894 1.21340 0.99317 0.92178 0.90125 1.18150 0.96975 1.08280 0.88907 1.23399 0.87272 0.99734 0.94251 1.76084 1.20705 1.14516 1.03169 1.78905 1.03563 1.16122 1.05869 1.47722 1.06943 1.38216 1.14413 0.66968 1.74960 1.23863 1.18112 0.97697 1.22813 0.92759 0.88696 0.93622 1.67827 1.34014 1.18018 0.99219 0.94636 0.92904 0.95466 0.87808 0.94637 0.92438 0.76326 0.72903 0.83340 0.83096 0.81407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.51 37.15 0.32 -2.59 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.47 2.24 -69.08 -0.15 6.31 16 4 H 0.06 1.51 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.82 8.73 -34.44 -0.30 -14.12 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.83 11.29 55.43 0.63 -23.21 16 9 Si 0.90 20.29 29.54 -169.99 -5.02 15.26 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.67 -13.74 5.01 -55.39 -0.28 -14.02 16 14 C 0.50 9.40 6.46 -11.63 -0.08 9.32 16 15 O -0.53 -10.76 13.62 5.49 0.07 -10.69 16 16 C 0.50 8.25 7.84 -11.63 -0.09 8.16 16 17 O -0.45 -8.29 14.72 5.49 0.08 -8.21 16 18 N -0.64 -8.33 5.37 -11.85 -0.06 -8.39 16 19 C 0.39 4.75 7.42 -154.84 -1.15 3.60 16 20 C -0.21 -1.81 9.92 -39.28 -0.39 -2.20 16 21 C 0.00 -0.02 9.83 -39.01 -0.38 -0.40 16 22 C -0.12 -1.14 5.89 -104.72 -0.62 -1.75 16 23 C 0.23 2.28 7.95 -156.28 -1.24 1.03 16 24 N -0.27 -2.72 12.30 32.15 0.40 -2.33 16 25 N -0.05 -0.41 13.47 60.35 0.81 0.40 16 26 N -0.23 -1.33 7.90 60.35 0.48 -0.85 16 27 H 0.48 0.49 8.96 -340.36 -3.05 -2.56 16 28 N -0.29 -2.48 12.10 32.17 0.39 -2.10 16 29 C 0.18 2.04 10.86 -17.22 -0.19 1.86 16 30 N -0.48 -6.63 7.85 -12.13 -0.10 -6.73 16 31 H 0.03 0.71 5.64 -51.93 -0.29 0.42 16 32 H 0.05 1.15 7.85 -51.93 -0.41 0.75 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.40 7.85 8.01 -40.82 -0.33 7.53 16 38 H 0.43 4.58 8.17 -40.82 -0.33 4.25 16 39 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.15 0.98 7.96 -52.48 -0.42 0.57 16 41 H 0.17 1.63 7.89 -52.48 -0.41 1.22 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -32.49 359.29 -8.46 -40.94 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.76 Total: 6.77 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -4.51 Total: 7.74 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 2.26 Total: -57.23 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.16 Total: -18.90 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.49 -8.46 -40.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.195 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds